Tsep006483.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachymyrmex septentrionalis
Gene Symbol
Hr39
Assembly
GCA_001594115.1
Location
NW:2200194-2224052[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 2.5 8.8e+03 -5.0 8.0 130 160 39 69 18 100 0.55
2 5 0.77 2.7e+03 -3.4 6.0 72 163 301 392 228 414 0.62
3 5 3 1.1e+04 -7.5 9.3 76 153 433 514 401 537 0.42
4 5 3.6e-08 0.00013 20.8 0.0 1 22 604 625 604 637 0.91
5 5 6.2e-71 2.2e-67 227.5 0.0 162 408 756 995 724 995 0.86

Sequence Information

Coding Sequence
ATGTCAGAGCAAAACGGGCCCAGCGAGGGCCCAGGGCCAGGGCCCGGTTCGGATTCCACGAGCTGGTGGCCAAGTACGCAGACTTGGAAGTCGTCAGCAGCCGCCTCGTCGTCGACTTCGTCGACTCCCACTTCAGCGTCCGTCTCTGTCTCCTGCTCTGCGTCCAGCTCGTCGACGAGCTCCTCCACCTCGATCAACTCGTCCGCGACCTGTTGTCCCTCGTCGTGTATCGGCGTGTCCTGCACGATGAGTCCAAGCCGTTCCACGGAAACGGGGAAAAATGTATCCGTCACTACTATTAACGTACCGCCCAATCAAGAAATGCATGATGCTAAAGGAGTATGTAAATATCTCGGGGGGCAAAACGGCGTGACAGTATCGGTGGTATCGACCTCGATTCTGGGATGTGGAAACGCGAATGCCGTCCCGACAAGCGGAATCTGCACGAATACGGGGTCGCATAGTATCGGTATCGGAATTGGTGGCATCCTCGCTGCGAACGCAGCCGATATCGATGATCCTGAGGACAGCGACGGCGAGATCAGTAAGATTGACTTTCGAGGTGTCAATCTACGTTCGAAGAAGAAACGCGACGTATCGGGTAATCAGAATGGCGACAAGATCGATGACGGAGAAGCAAACGGCGACGGCGGGGGTTGCTGCGATGATAATTCACAACAGCAACCTGAGAGGCCCATGTCATGGGAGGGTGAATTATCGGATCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCACAATGAGGAAACGTCTATGGAGGGGGTTCAAGTATGTAGTACGAGTCCTGGGCCTATGGAACAGAAGTTTCCTATTAAGTCAGAGCCGGATTTTCGATCTAGTCCAGGTTTCACAATAGGATCCTTTCACGATGGTGGATTGCCCATGACACACAATCTACAATTgcaacaacagcaacagcaacaacgTGGTATCGAAAACATCGAACAAACTCAACAGAGCGACCTACCACTTCTTGTAGGCAAGCTTCTCGGTGGATACAACAATTCAACACCTAATCATAGCCCCGTCCTCAATCCGCGACATCATTTAACTAAACACAGTCATACTAGATCGCAGGTGCCGTCACCAGATTCCGCCATTCATTCTGCCTATAGCGTCTTCAGTTCACCGACACAGAGTCCTCATGCAGCACGACACTCCGCCCTAGGAGCGGGTAGTCCGATACCCTCCTCGTCGTTGTCCCTCTCTCGACACAGCTTCAACAACTCGACTTCTTCGTTATCTCTATCGTTGTCGCATTCACTTTCGAGGAACAATTCTGACGCTTCCAGTAGCTGCTACAGCTACGGTTCGCTTAGCCCGCCTACGCATTCACCCGTCCAGCAGCCGAGACATCCGCATTCACACTCACAACATCATCAGCATCAAGTGGCGCAAGGTAGTCCGCTGCATCTACCAGCCTCCTCCGCAGTTGCCGCACATCATTACTCGTCCTCTTCCGTACCAGGTTCGGAATTGTCGCCGGACGGCCATCCAGTTGCGGAAGATCAGGAAGACTGTAGGTTACCCTCGGCGCCATCGGGTATCTCCACCAGGCaacaattaattaacagtCCCTGCCCGATTTGCGGTGACAAGATAAGCGGCTTCCATTATGGCATCTTCTCGTGTGAATCGTGCAAGGGATTTTTCAAGCGCACCGTCCAGAATCGTAAGAACTATGTGTGCCTTAGAGGCGCAGGTTGTCCGGTCACCGTGGCCACGAGGAAAAAGTGCCCAGCCTGCCGCTTCGACAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATCAGGGAGGATCGTACCAGAGGTGGTAGAAGCACTTATCAGTGTACCTATACTCTGCCAAATCTCGTTGGTAGTCCTGCTGGTATGACCAGTGAAAAACTGACGACGGCAGGCAATTGCAGCCCGGCACCGGCCGGTAGCGAGCATCATTATTCTGTTAGATATCATTCAAATCATTCTTACAAGATGCAAGTAGTACCTCAACTTTTGCAAGACATCATGGACGTAGAACATCTTTGGCATTATAACGATAACGATCGGATAAGCGGTAGTGGAGGAATACTTGGAAGTGTAAGGAATACCGGTAGTGACAGTCTGCTGCTCAGTGGATCCGGAAGTGGTCCAGCGCTCAGCGGCACTGGAACTGCGACCAGCATTGGCGTCGGAAACAACGGAGGTGCAGTGGAATGTTCGTCGAATGACTCTAGCAATGTCGATACTAGTAGCAGAAGAGGAGAAACGGCGAGCCCCACTGATTCGATCTTAACGGGGGCGTCCGATCAACATTCCACAAATGGCAATACCactaataatagtaattctcAAATTGCCAGTAATTCCAACGGTAATTCAGCGCAGCATCCAGACTTTCTATCTAATCTGTGCAACATCGCGGATCATCGGCTCTACAAGATCGTCAAGTGGTGCAAAAGTTTgccattatttaaaaatatttcaatcgaTGATCAAATCTGTTTGTTGATTAACTCTTGGTGCGAGCTACTACTTTTCTCCTGCTGTTTTCGCAGCATGAGCACTCCCGGTGAGATAAGAGTGTCTCTCGGCAAGTCGATTACTTTAGAACAGGCAAGACAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCACTTTTACCAACAATCTGCGAAGACTGAGAGTAGACCAATACGAATATGTTGCAATGAAGGTGATCGTGCTGTTAACGTCCGATACAAGCGAATTAAAAGAGCCTGAAAAGGTCAGAGCTTCTCAAGAAAAGGCACTTCAAGCACTCCAGCAATATACAATCGCGAGGTACCCAGAAATGCCTGCCAAATTTGGTGAATTATTGTTGAGAATTCCAGATCTGCAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGTGCCGAGGGAGAAGGCAGCTCGTTTAACCTTTTAATGGAATTGTTGAGAGGAGATCACTGA
Protein Sequence
MSEQNGPSEGPGPGPGSDSTSWWPSTQTWKSSAAASSSTSSTPTSASVSVSCSASSSSTSSSTSINSSATCCPSSCIGVSCTMSPSRSTETGKNVSVTTINVPPNQEMHDAKGVCKYLGGQNGVTVSVVSTSILGCGNANAVPTSGICTNTGSHSIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIDDGEANGDGGGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPGFTIGSFHDGGLPMTHNLQLQQQQQQQRGIENIEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVAQGSPLHLPASSAVAAHHYSSSSVPGSELSPDGHPVAEDQEDCRLPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPNLVGSPAGMTSEKLTTAGNCSPAPAGSEHHYSVRYHSNHSYKMQVVPQLLQDIMDVEHLWHYNDNDRISGSGGILGSVRNTGSDSLLLSGSGSGPALSGTGTATSIGVGNNGGAVECSSNDSSNVDTSSRRGETASPTDSILTGASDQHSTNGNTTNNSNSQIASNSNGNSAQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLTFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_00885153;
80% Identity
iTF_01476950;