Cnig033930.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cataglyphis niger
Gene Symbol
Hr39
Assembly
GCA_004329405.1
Location
SJPC01001647.1:7520-31098[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 1 3.6e+04 -4.4 7.0 92 170 34 108 8 111 0.53
2 5 1.1 3.7e+04 -4.4 10.8 76 164 284 397 220 428 0.56
3 5 2 6.9e+04 -7.9 10.6 78 138 422 502 397 539 0.43
4 5 4e-08 0.0014 20.1 0.0 1 21 607 627 607 632 0.92
5 5 2.2e-70 7.5e-66 225.2 0.1 186 408 785 1001 653 1001 0.86

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGACCAGGGCCCGGTTCGGATTCAGGCTGGTGGCCCACCCAGACCTGGAaatcatcgtcgtcatcgtcatcgacGACGGCGGCGAATTCATCGTCAACTTCAACTTTAGCAGCAGGTTGTGCGTCCATTTCGGTTTCCTGCGCCACGTCCAGCTCGTCACCGACGAGCTCCTCCACCTCGACCAACACGTCCGCGTCCTGTTTGCCCCTATCTTGCATCGGTGTATCGATGAGCCCGAGCCGTTCCACGGAGACAGGGAAAAACGTATCCGTCACCACTATTAACGTACCGCCCAATCAAGAGATGCACGATGGTAAAGGAGTGTGTAAATATCTCGGAGGACAGAACGGCGTGACAGTATCGGTAGTATCGACCTCGGTGTTGGGATGCGGAAACGTCGTCCCGACGAGTGGAATCTGCACGAATACGGGGCCGCATAGTATCGGCATCGGAATCGGCGGTATCCTCGCCGCGAATGCGGCCGACATCGACGATCCCGAGGACAGCGACGGTGAGATCAGCAAGATTGATTTTAGAGGCGTTAATCTACGCTCGAAGAAGAAACGTGACGTATTGGGTAACCAGAACGGTGACAAGATCGGCGACGGGGAGGCAAATGGCGATGGCGCGGGATACTGCGACGATAATTCTCAACAGCAGCCCGAGAGACCAATGTCGTGGGAGGGGGAATTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCATAACGAGGAAACGTCTATGGAGGGAGTTCAGGTGTGCAGTACGAGTCCTGGACCTATGGAACAGAAATTTCCGATTAAGTCAGAGCCGGATTTTCGATCCAGTCCGGCTTTCACAATAGGATCCTTTCACGACGCCGGACTACCCATGAGTCATAATCAACAActgcaacagcaacaacagcaacaacgcGGTATCGAAAATCTCGAGCAGACTCAACAAAGCGACCTACCGCTTCTCGTGGGCAAGCTTCTCGGCGGATATAATAATTCCACACCTAATCACAGCCCTATTCTCAATCCGCGACATCATCTAACCAAGCACAGTCATACTAGATCGCAGGTGCCGTCACCAGATTCCGCCATTCATTCTGCATATAGCGTCTTCAGTTCACCGACGCAAAGCCCTCATGCTGCACGGCACTCCGCCTTAGCGGGCAGTCCGATACCGTCCTCATCGTTATCCCTCTCTCGGCACAGCTTCAACAATTCAACCTCTTCGCTCTCCCTGTCACTGTCACATTCGCTTTCGAGAAACAACTCGGACGCTTCCAGTAGCTGTTACAGTTACGGCTCGCTTAGCCCGCCTACGCACTCACCCGTCCAACAACCGAGACATCCGCATTCGCACTCGcaacatcatcagcatcaaGTGGCGCAAGGTAGTCCGTTGCATCTTCCGGCAACCTCGTCCGCTGTCGCCACACATCATTACTCATCCTCTTCCGTGCCAGGATCGGAATTATCGCCGGACGGCCACCCGGTCGCGGAGGATCAGGAAGACTGTAGAATACCTTCGGCGCAATCGGGTATTTCCACCAGACAGCAATTGATAAATAGTCCCTGTCCGATTTGCGGTGACAAGATAAGCGGATTTCATTACGGTATCTTCTCGTGCGAGTCGTGCAAGGGATTCTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCCGGTCACCGTGgctacgagaaaaaaatgtccgGCCTGTCGCTTCGACAAGTGCCTCAACATGGGTATGAAGCTTGAGGCGATCAGGGAGGATCGTACCAGAGGCGGTAGAAGCACATATCAGTGCACCTATACTCTACCAGCGAATCTCGTCGGCAGTCCCGCCGGCGGTATGACCGGTAACGAAAAACTGACTGCGGCGGGCAATTGCAGTCCGGCACCAGCCGGAAGCGAACATCATTATTCAGTCAGATATCATTCGAATCATTCTCACAGGATGCAAGTGCCGCAACTCTTGCAAGACATTATGGACGTGGAGCATCTCTGGCATTATAACGACAATGATCGAGCAAGCGGAGGAATATCCGGGAATGCGAGGAGCATCTCTATTAGCGGTGATAGCAACATGCTGCTCGGTGGATTCGGAAGTGGCGCATCCACACCCGGTGGCACTGCGACTGTCATCGGTGCTGGAAATAACGGAGGCGCGGTGGAATGTTCGTCGAACGATTCGAACAACGTCGATACTAACAACAGAAGAGGAGAGTCGAGTAGCCCCGCCGGCTCGACTTCCATAGGGGCGCCCGATCAACATTCCACGAACGGCAATACCGTGAATAATAGCAATTCCCAAATCGCTAGTAATTCCAATAATGGCAATCCGACGCAACATCCGGACTTTCTGTCTAACCTATGCAACATCGCGGATCATCGACTTTATAAGATTGTCAAATGGTGCAAGAGTCTGccgttattcaaaaatatctcgatTGATGATCAAATCTGTTTGTTAATCAATTCTTGGTGCGAGCTATTACTCTTTTCCTGCTGTTTTCGCAGCATGAACAGTCCCGGTGAGATCAGAGTGTCTCTCGGCAAGTCGATCACTCTAGAGCAAGCTAGAGAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTTACAAATAATCTGCGAAGGCTGAGAGTAGATCAATATGAATATGTTGCTATGAAGgtGATCGTGCTGTTAACATCCGACATAAGTGAATTAAAGGAACCTGAAAAAGTCAGAGCTTCTCAAGAAAAAGCTCTTCACGCATTGCAGCAATACACAATCGCAAAATATCCAGAAATGCCTGCCAAATTCggtgaattattattgagaattCCAGATCTACAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGAGAAACGTGCCGAGGGAGAAGGCAGCTCCTTTAATCTTCTAATGGAATTGTTGAGAGGAGATCATTAA
Protein Sequence
MSEQNGPSEGPGPGPGSDSGWWPTQTWKSSSSSSSTTAANSSSTSTLAAGCASISVSCATSSSSPTSSSTSTNTSASCLPLSCIGVSMSPSRSTETGKNVSVTTINVPPNQEMHDGKGVCKYLGGQNGVTVSVVSTSVLGCGNVVPTSGICTNTGPHSIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKRDVLGNQNGDKIGDGEANGDGAGYCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPAFTIGSFHDAGLPMSHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPILNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVAQGSPLHLPATSSAVATHHYSSSSVPGSELSPDGHPVAEDQEDCRIPSAQSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMTGNEKLTAAGNCSPAPAGSEHHYSVRYHSNHSHRMQVPQLLQDIMDVEHLWHYNDNDRASGGISGNARSISISGDSNMLLGGFGSGASTPGGTATVIGAGNNGGAVECSSNDSNNVDTNNRRGESSSPAGSTSIGAPDQHSTNGNTVNNSNSQIASNSNNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMNSPGEIRVSLGKSITLEQARELGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDISELKEPEKVRASQEKALHALQQYTIAKYPEMPAKFGELLLRIPDLQRTCQAGKELLSEKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_00885153;
80% Identity
iTF_00280642;