Tcor000136.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachymyrmex cornetzi
Gene Symbol
Hr39
Assembly
GCA_001594075.1
Location
NW:726409-751028[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 2.1 8.2e+03 -4.8 7.6 130 160 38 68 18 100 0.55
2 5 3 1.2e+04 -6.0 9.7 76 163 304 391 238 436 0.57
3 5 3 1.2e+04 -8.8 11.7 76 160 432 520 398 537 0.43
4 5 3.6e-08 0.00014 20.8 0.0 1 22 603 624 603 636 0.91
5 5 9.6e-71 3.8e-67 226.9 0.0 180 408 772 994 723 994 0.87

Sequence Information

Coding Sequence
ATGTCAGAGCAAAACGGGCCCAGCGAGGGCCCAGGGCCAGGGCCCGGTTCGGATTCGAGCTGGTGGCCAAGCACGCAGACTTGGAAGTCGTCAGCAGCCGCCTCGTCGTCGACTTCGTCGACTCCCACTTCAGCGTCCGTCTCTGTCTCCTGCTCTGCGTCCAGTTCGTCGACGAGCTCCTCCACCTCGATCAACTCGTCCGCGACCTGTTGTCCCTCGTCGTGTATCGGCGTGTCCTGTACGATGAGTCCAAGCCGTTCCACGGAGACGGGGAAAAATGTATCCGTCACTACTATTAACGTACCGCCCAATCAAGAAATGCATGATGCTAAAGGAGTATGTAAATATCTCGGGGGGCAAAACGGCGTAACTGTATCGGTGGTATCGACCTCGGTACTGGGATGTGGAAACGCGAATGCCGTCCCGACAAGCGGAATCTGCACGAATACGGGGCCGCATAGTATCGGTATCGGAATTGGTGGCATTCTCGCTGCGAACGCAGCCGATATCGATGATCCTGAGGACAGCGACGGCGAGATCAGTAAGATTGACTTTCGAGGTGTCAATCTACGTTCGAAGAAGAAACGCGACGTATCGGGTAATCAGAATGGCGACAAGATCGGTGACGGAGAAGCAAACGGCGACGGCGGGGGTTGCTGCGATGATAATTCGCAACAGCAACCTGAGAGGCCCATGTCATGGGAGGGTGAATTATCGGACCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCACAATGAGGAAATGTCTATGGAGGGGGTTCAAGTATGCAGTACGAGTCCTGGGCCTATGGAACAGAAGTTTCCTATTAAGTCAGAGCCGGATTTTCGATCTAGTCCAGGTTTCACAATAGGATCCTTTCACGATGGTGGATTACCCATGACACACAATCAACAACtgcaacaacagcaacagcaacaacgCGGTATCGAAAACCTCGaacaaactcaacagagcgaccTACCACTTCTTGTAGGCAAGCTTCTCGGTGGATACAACAATTCAACGCCTAATCATAGTCCCGTCCTCAATCCGCGGCATCATCTAACTAAACACAGTCATACTAGATCGCAGGTACCGTCACCGGATTCCGCCATTCATTCTGCGTACAGCGTCTTCAGTTCACCGACACAGAGTCCTCACGCAGCACGACACTCTGCCCTAGGAGCGGGTAGTCCGATACCCTCCTCGTCGTTGTCCCTTTCTCGACACAGCTTCAACAACTCGACTTCTTCGTTATCTCTATCGTTGTCGCATTCGCTTTCGAGGAACAATTCTGACGCTTCCAGTAGCTGCTACAGCTACGGTTCGCTTAGCCCGCCTACGCATTCACCCGTCCAGCAGCCGAGACATCCGCATTCACACTCACAACATCATCAGCATCAAGTGGCGCAAGGTAGTCCGCTGCATCTACCAGCCTCGTCCGCAGTTGCCGCACATCATTACTCATCCTCTTCCGTACCAAGTTCGGAATTATCGCCAGACGGCCATCCCGTTGCGGAAGATCAGGAAGACTGTAGGTTACCTTCGGCGCCATCGGGTATCTCCACCAGGCAACAATTAATTAACAGTCCCTGCCCGATTTGCGGTGACAAGATAAGCGGCTTCCATTATGGCATCTTCTCGTGTGAATCGTGCAAGGGATTTTTCAAGCGCACCGTCCAGAATCGTAAGAACTATGTGTGCCTTAGAGGCGCAGGTTGTCCGGTCACCGTGGCCACGAGGAAAAAGTGCCCAGCCTGCCGCTTCGACAAGTGCCTCAATATGGGTATGAAGCTCGAGGCGATTAGGGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAGTGTACCTATACTCTGCCAAATCTCGTTGGTAGTCCTGCTGGTATGACCAGTGAAAAACTGACGACGGCAGGCAATTGCAGCCCGGCACCGGCTGGTAGCGAGCACCATTATTCTGTTAGATACCATTCAAATCATTCTTACAAGATGCAAGTAGTACCTCAACTTTTGCAAGATATTATGGATGTAGAACACCTTTGGCATTATAACGATAACGATCGGATAAGCGGTAGTGGAGGAATACTTGGAAGTGTAAGGAATACCGGTGGTGACAGTCTGTTGCTCAGTGGACCTGGAAGTGGTCCAGCGCTCAGCGGCACTGGAACTGCGACCAGTATTGGCGTCGGAAACAACGGAGGTGCAGTGGAATGTTCGTCGAATGACTCTAGCAATGTCGATACTAATAGCAGGAGGGGAGAAACGGCGAGCCCCACTGATTCAATCTTAACGGGGGCGTCCGATCAACATTCCACAAATGGCAATACCACTAATAATAGTAATTCTCAAATTGCTAGTAATTCCAACGGTAATTCAGCGCAGCATCCAGACTTTCTATCTAATCTGTGCAACATCGCGGATCATCGGCTCTATAAGATCGTCAAGTGGTGCAAAAGTTtgccattatttaaaaatatttcaatcgaTGATCAAATCTGTTTGTTGATTAACTCTTGGTGTGAGCTACTACTTTTCTCCTGCTGTTTTCGCAGCATGAGCACTCCCGGTGAGATAAGAGTGTCTCTCGGCAAGTCGATTACTTTAGAACAGGCAAGACAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCACTTTTACCAACAATCTGCGAAGACTGAGAGTAGACCAATATGAATATGTTGCAATGAAGGTGATCGTGCTGTTAACGTCCGATACAAGCGAATTAAAAGAGCCTGAAAAGGTCAGAGCTTCTCAAGAAAAGGCACTTCAAGCACTCCAGCAATATACAATCGCAAGGTACCCAGAAATGCCTGCCAAATTTGGTGAATTATTGTTGAGAATTCCAGATCTGCAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGTGCCGAGGGAGAAGGCAGCTCGTTTAATCTTTTAATGGAATTGTTGAGAGGAGATCACTGA
Protein Sequence
MSEQNGPSEGPGPGPGSDSSWWPSTQTWKSSAAASSSTSSTPTSASVSVSCSASSSSTSSSTSINSSATCCPSSCIGVSCTMSPSRSTETGKNVSVTTINVPPNQEMHDAKGVCKYLGGQNGVTVSVVSTSVLGCGNANAVPTSGICTNTGPHSIGIGIGGILAANAADIDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIGDGEANGDGGGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEEMSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPGFTIGSFHDGGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVAQGSPLHLPASSAVAAHHYSSSSVPSSELSPDGHPVAEDQEDCRLPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPNLVGSPAGMTSEKLTTAGNCSPAPAGSEHHYSVRYHSNHSYKMQVVPQLLQDIMDVEHLWHYNDNDRISGSGGILGSVRNTGGDSLLLSGPGSGPALSGTGTATSIGVGNNGGAVECSSNDSSNVDTNSRRGETASPTDSILTGASDQHSTNGNTTNNSNSQIASNSNGNSAQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLTFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01267641;
90% Identity
iTF_00885153;
80% Identity
iTF_01476321;