Pimp012741.1
Basic Information
- Insect
- Prenolepis imparis
- Gene Symbol
- Hr39
- Assembly
- GCA_030444845.1
- Location
- JAUDTA010000005.1:3302726-3307072[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.12 2.1e+03 -0.7 6.6 108 172 24 86 11 114 0.59 2 5 0.25 4.2e+03 -1.7 5.0 54 163 293 402 273 420 0.60 3 5 3 5.1e+04 -7.5 9.8 76 147 443 520 411 549 0.40 4 5 5.5e-08 0.00093 20.2 0.0 1 21 616 636 616 650 0.92 5 5 7.2e-70 1.2e-65 224.0 0.0 194 408 801 1010 783 1010 0.94
Sequence Information
- Coding Sequence
- ATGTCGGAGCAAAACGGGCCCAGCGAGGGCCCAGGACCAGGGCCCGGTACGGATTCAGGCTGGTGGTCGGCCACGCAGACCTGGAAATCATCGACGTCATCGTCGTCGGCCgcgacggcggcggcggccTCATCGTCAACTTCCACTTCCGCGGCAGCGGGTCCCGCGTCCGTTTCCGTTTCCTGCGCCACGAGCTCCAGCTCGTCCTCGACGAGCTCCTCCACCTCGACCAACACGTCCGCGACCTGTTGCCCCTTGTCTTGCATCGGGGTATCGATGAGCCCGAGTCGTTCCACGGAGACAGGGAAAAACGTGTCCGTCACCACTATTAACGTACCGCCCAATCAAGAGATGCACGATGgtaAAGGAGTGTGTAAATATCTCGGAGGACAGAACGGCGTGACGGTGTCCGTGGTTTCGACCTCGGTGCTGGGATGCGGAAATTCCGCGGTCCCGACGAGCGGAATCTGCACGAATGCGGGGCCGCCGCATAGCATCGGCATCGGAATCGGCGGTATCCTCGCCGCGAACGCGGCCGACGTCGACGATCCCGAGGACAGCGACGGCGAGATCAGCAAGATCGACTTTCGGGGCGTGAATTTGCGCTCGAAGAAGAAACGCGACGTATCGGGTAATCAAAACGGCGACAAGATCGGCGACGGGGACGCGAATGGCGACAACGCGGGATGCTGCGACGATAATTCGCAGCAGCAGCCTGAGAGACCGATGTCGTGGGAGGGAGAACTGTCGGATCAAGAAATGTCTTCCAATACAATTACTAATCAGGACCATAACGAGGAAATGTCTATGGAAGGAGTTCAAGTGTGCAGTACGAGTCCTGGACCTATGGAACAGAAATTTCCAATCAAATCAGAGCCGGATTTTCGATCTAGTCCGGCTTTCACAATAGGATCCTTTCACGACGCTGGATTATCCATGACACACAACCGACAATTGCAACAACAGCAACAGCAACAACGCGGTATCGAAAATCTAGAACAGACTCAACAGAGCGACCTACCGCTTCTCGTAGGCAAGCTTCTCGGCGGATACAACAATTCCACGCCTAATCACAGTCCTATTCTCAATCCGCGACATCATCTAACCAAGCACAGTCATACTAGATCGCAGGTGCCGTCACCAGATTCCGCCATTCATTCCGCATACAGCGTCTTCAGTTCACCGACGCAAAGCCCTCACGCAGCACGACACTCCGCCCTAGGTGCTGGAAGTCCGATACCGTCCTCGTCGTTATCCCTCTCTCGGCATAGCTTCAACAATTCGAACTCCTCGCTATCCCTGTCGCTGTCGCATTCGCTTTCGAGAAACAACTCGGACGCTTCGAGTAGCTGTTACAGCTACGGCTCGCTTAGCCCGCCTACGCATTCACCCGTCCAGCAACCGAGACATCCGCATTCGCACTCGCAGCATCATCAGCATCAAGTGGCGCAAGGTAGTCCGTTGCATCTTCCGGCAGCCTCGTCCGCTGTCGCCGCGCATCATTACTCGTCGTCCTCTTCCGTGCCAGGTTCGGAACTGTCCCCGGACGGTCACTCGGTCGCGGAGGATCAGGAAGACTGCAGAATACCCTCGGCCCCGTCGGGTATTTCCACCAGACAGCAACTGATAAACAGTCCCTGTCCGATTTGCGGTGACAAGATAAGCGGATTTCATTACGGTATCTTCTCGTGCGAGTCGTGCAAGGGCTTCTTCAAGCGTACCGTGCAAAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGTCCGGTCACCGTGGCCACGAGGAAGAAATGCCCGGCCTGCCGCTTCGAAAAGTGCCTGAACATGGGTATGAAGCTCGAGGCGATCAGGGAGGATCGTACGAGGGGCGGCAGAAGCACCTATCAGTGCACCTATACTCTACCGGCGAATCTCGTCGGCAGTTCCGCCGGCAATATGGCCGGCAACGAAAAACTTACGGCGGCGGGCAACTGCAGCCCGGCACCGGTCGGAAGCGAGCACCACTACTCGATCAGATATCACTCGAATCATTCTCACAAGATGCAGGTGCCGCAACTCTTGCAAGACATTATGGACGTGGAGCATCTCTGGCATTATAACGACAACGATCGGGTGAGTGGAGGAATATCCGGGAATGCGAGGAACATCTCCATCGGCGGCGACAGCAGCAACGTGCTCGGCGGATTCGGAGGAGGTGGAACCGCGACTGTTATCGGCGCCGGAAATAACGGAGGCGCGGTGGAATGTTCATCCAACGATTCGAACAACGTCGATATAACAAACAaccgaggaggaggaggaggaggagagtCGGGTAGCCCCGCCGGCTCGACTTCCACAGGGGCGCCCGATCAACATTCCACGAACGGCAATACCGTGAATAATAGCAATTCTCAAATCGCCAGTAATTCCAATAATGGCAATCCGACGCAACATCCGGACTTTCTGTCTAATCTGTGCAACATCGCGGACCATCGGCTCTATAAGATCGTCAAGTGGTGCAAGAGTCTGCCGTTGTTCAAGAATATCTCGATCGACGACCAAATCTGTTTGTTGATCAACTCTTGGTGCGAGCTGCTACTCTTCTCCTGCTGCTTTCGCAGCATGAGCACTCCCGGTGAGATCAGAGTGTCTCTCGGCAAGTCGATCACTCTAGAGCAAGCTAGAGAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTTACCAACAATCTACGAAGGCTGAGAGTAGACCAATACGAATATGTTGCAATGAagGTGATCGTGCTCTTAACGTCCGACATAAGCGAATTAAAGGAACCTGAAAAAGTCAGAGCTTCTCAGGAAAAGGCCCTTCACGCATTGCAGCAATATACAATCGCGAGGTATCCAGAAATGCCTGCCAAATTCGGTGAACTATTATTGAGAATTCCAGATCTACAAAGAACGTGTCAAGCAGGAAAAGAATTGCTCAGCGCAAAACGCGCCGAGGGAGAAGGCAGCTCCTTTAACCTTTTAATGGAATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- MSEQNGPSEGPGPGPGTDSGWWSATQTWKSSTSSSSAATAAAASSSTSTSAAAGPASVSVSCATSSSSSSTSSSTSTNTSATCCPLSCIGVSMSPSRSTETGKNVSVTTINVPPNQEMHDGKGVCKYLGGQNGVTVSVVSTSVLGCGNSAVPTSGICTNAGPPHSIGIGIGGILAANAADVDDPEDSDGEISKIDFRGVNLRSKKKRDVSGNQNGDKIGDGDANGDNAGCCDDNSQQQPERPMSWEGELSDQEMSSNTITNQDHNEEMSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPAFTIGSFHDAGLSMTHNRQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPILNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSNSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHSHSQHHQHQVAQGSPLHLPAASSAVAAHHYSSSSSVPGSELSPDGHSVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFEKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSSAGNMAGNEKLTAAGNCSPAPVGSEHHYSIRYHSNHSHKMQVPQLLQDIMDVEHLWHYNDNDRVSGGISGNARNISIGGDSSNVLGGFGGGGTATVIGAGNNGGAVECSSNDSNNVDITNNRGGGGGGESGSPAGSTSTGAPDQHSTNGNTVNNSNSQIASNSNNGNPTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARELGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDISELKEPEKVRASQEKALHALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01267641;
- 90% Identity
- iTF_00885153;
- 80% Identity
- iTF_01254832;