Dnoa001276.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dufourea novaeangliae
Gene Symbol
RREB1
Assembly
GCA_001272555.1
Location
NW:595217-617825[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.011 0.61 9.8 0.1 1 23 39 61 39 61 0.96
2 16 0.00023 0.013 15.1 0.4 1 23 75 97 75 97 0.97
3 16 5.6e-07 3.1e-05 23.3 1.2 1 23 103 126 103 126 0.98
4 16 0.0081 0.45 10.2 0.0 1 23 218 242 218 242 0.95
5 16 0.23 13 5.6 2.1 2 23 248 270 248 270 0.94
6 16 1.3 69 3.3 0.6 1 19 326 344 326 346 0.89
7 16 0.13 7.4 6.4 0.1 1 23 460 482 460 482 0.96
8 16 2e-05 0.0011 18.4 0.3 1 23 491 513 491 513 0.98
9 16 0.00087 0.048 13.3 2.8 1 23 519 542 519 542 0.97
10 16 0.00032 0.018 14.6 3.0 1 23 922 945 922 945 0.97
11 16 0.00035 0.019 14.5 0.1 3 23 1221 1241 1219 1241 0.97
12 16 0.41 23 4.9 6.0 1 23 1247 1270 1247 1270 0.97
13 16 0.0029 0.16 11.6 2.2 1 23 1308 1332 1308 1332 0.97
14 16 2.1 1.2e+02 2.6 5.3 1 23 1415 1438 1415 1438 0.95
15 16 0.0079 0.44 10.3 0.4 2 23 1489 1510 1488 1510 0.94
16 16 0.93 52 3.7 8.2 1 23 1516 1538 1516 1538 0.98

Sequence Information

Coding Sequence
ATGGATTACTCGACGAAAGtTACTGTCAAGAGTGGACCCGATCAGGGAATCGACAACGAGGCACAAGCCGATGCCGCATCGCCACCATCGAGTGTCGAGCTGCCAGAAAGCGCTCACCCCTGTCCCGCCTGCCCGACGATCCTCCCCAGTTCGCGGGAGCTGACGAACCATCTTCGCGGTCACAACTCACCACGCAGCACTGACTGCAGCGGCGAGGAGGATTATTGTTGCGGGGTATGCAACAAAGTGTTGAGCTCTGCGAGCTCGTTGGACAGACACGTGCTGGTCCATTCCGGGGAACGGCCGTTCAAATGCAAGTACTGCGAGATGGCGTTCACCACGAACGGTAACATGAACAGGCATCTGAGAACCGCCCATCGATCGACCTCGCCGCACAGCTGCACGGACTCGGACGGCAGCAGCGACTCGGAGAAACCGACTAAACGACGTCACATGGAGGAGTACAACAACAACGAAATCGCGAAGAGGAACTCGCCTGATTTCATCGTGGACAGACAAGAGAAATCGTCCAGTCTGAAGCGCAAATGCACGGACTATCCCAGTGACACGGAGAACCAAAAGAGGCACAAGATCCTGTTGAACAATTCTCGTACGGAGATCAAAGCGCGACCGGACGACAGTCAGAACGTTTACAACTGTCCGGTATGCGGGAGACAGGATTTCGCCACCAGCGCCCTCTTGGAAGCGCATCTGGAGCGCAGCCATCCGGAATTCCCCGCGAAATGCGACGCTTGCAATCTGTCGTTCAAGAACCATCGGGTGTTGAATCTCCACCGGTTCATGATCCATTTCGCGGAGCATTCGATCGGTAACACCGCGAGGAATCTACGGAATTCCGTGGTCGGTTTCAACGATCTTACGTTCGTCGATTTCTCGTCGGATAAATTCCCGGCGATCGCCCGAGCGGTCTGCGAGCAGTCCCTTCATCGGCCAGCATCCGGAGAAGTCGCCAAGTTCCAATGCTCCAAGTGTCTTCGAGCGTTCCCGTGCAGATCGGCCCTGGACGCGCACGAAAGCGATTGCGGGATGTCGATTTCTCAGACCAGGGTGATCGACGACAACCAATCCCGAAGGGACGATTTCTTCGCTGGTCTAGACTTACAGAACAAAGCCGCGCTAACTGAAGCCAAAGAGGGCAAAGATCTCGCCGATATTCAGAGCATTATCTCCGTGACATCTGGACCGATACTGCAGAACTTCCCGAGATCGGATGCGAGTACGCCCGAAAGCAACATCAAGTTCAATCCCAGCGTCAGCTCCTCTGGATCCTCGGGCACCTTCTCGTCGGAGTATCACGAGGAGGAGGCACAGGACGCGTTCGCGGCCGAGTTCAGAAAGATGAAGCTAAAAGGGGAGTTTCCCTGTAGACTGTGCACAGCGATATTCCCAAACCTGAGGGCCCTGAAGGGTCACAACAGGGCGCACATGGGCGTCGGCCCGGGAATGCCCTATCCCTGTAACATGTGCCCGTACACGAGCACCGATAAAGCCACGTTGGTCAGACACCTGAGGTCCCACAACGGCGACAGGCCGTACGAGTGCTCGTTGTGCAATTACGCGTTCACCACCAAGGCGAACTGCGAGCGTCATGTTCGGAACAGGCACGGGAAGCTCACCAGAGAGGACATCAAGAGCGTTCTGATCTATCATCCGAACGAGGATTCGACGAACGAGAACGTGGAGAGAAGCTCGCCCAGGGTGATCAAGGACGACGTCAGGAAGAGCCTGGTCTATCCGAACGATCGCGACGAATTGCCGCATCAAGCGCAGCTTCATTACCCGTCGGTGCCGATCGACGGTCGAGGTGATGTCAGGATGATAGAGGAGGCGAAGCTGCACAATCCGATGTCCATGCACGGTAATCATTACGAGAAACTGGACGCGTTCTCGAGACCAGGCCAGCCCATCGAACTGACGCAACGGAACGTGGATGAATCGAGATCTGGGGACACCAAGCAGGACTACGCGAAGCTTGACGAAGACCTGGAGTCGAGATCGTCGGAGGGCAGCGTGTCTCTAGTCAGTGATACCAAATCAGATTCGCACCAAAGATTACAAGCTAGTCCGATGAACTTGAAGAAGGGTCTGAACGTGTCCGAGAATATCGGCGAGGACGGACCTCTGGATCTCTCGATGGACGTTCTCGATCTCAGTAAGAAATCGAAGGAGAAAGAGGACAACGATTACACGACAGCCTCTCAGGACCCATACGGGAAGAGCCAGAAAGAATTGTACAATGCCACCAGTCAGTTACTGCTGACCGAGGCTTTACTGAAGGCTGGACAGGGTAGCTCTCAGCCTACATCCCTGGAAGCCCTCTATGCGAACGCTCACATGATTTATAGGAACTTTGGAACGTTTCCCGGCGGTGTGGGGGCGGGTATATTACCCCCGTATCTGTTCAATCCTCATGTCTTCGGACAGGAATTCTCCATCAAGGAAAGACTGCAAAAAGAGCTGGTCAGGGGCCTACAGTTGACCAGCGGTGGTACTCTAGTGGAACCGCCTATAGCTGCCGCTGGATTCACCGCTTTCCCTCAAAGTAGAGACATTAACGCTCAGCCACCGACCGAACAGAGCGACTACGCGAAGCTGATCTCCTCGAAACTCGCGAGCAAAGCATTGGTCAACCGGGACAAGCCGGAGAATCACATACCGTCCTCGAACTCCGTGAAGATGGTGATCAAGAACGGTGTGTTGATGCCTAAACAGAAGCAAAGACGGTACAGAACAGAGAGGCCGTTCACCTGCGAACACTGTTCCGCGAGATTCACCCTGAGGAGCAACATGGAGAGACACATTAAGCAGCAACATCCTCAGCATTGGAGCCAAAGACCAAGAGGTGGACACTCGACCAGAGGAAGACCACCCTCGAGTCATCCGACGTTGGTGCAGAACTTAGGACAATCCGCGTCACAGGCGACGCAATCGTATCCCAATATCCTGCCGAAAGTGGAACAACCGAGTACCGAGTATTCGAAACACCCGCCGATATCCGATCAGGTGAAGTACGCCATTCTGGCGCAGCAGTTGAAGGCCAACAAGCTCGAGGAGAATGATTCGGAGGAGGAGTTGGTAATCGATGAGGATCCTCAAGACAAAGACCAGGAATCTCAAGACCAGAAGGATAAATGCACCAGTCTGCTGAGAGGTCAGCTGGAAGGTTTAGAGTCTGCCAAAGAGGTGGTGAAGGAGGAGGCTGACGAATGCACGAAAAGTGGCGATTCGACGAACACCGAGTCAGCTAACAGTGACAACGGTAACGATGACACGAAGATGTCGGACACGGAGAAGCCAATGGAGACTGACGAACCGTGTGATGACGCCGACAGGGTGTTTAAGTCCGAACCGGATGAAGAGAAGGCAGAGAAGATGGAGGACGGGACCACCGATTTGGCCAGTGTATCTGAACTGTTGGACAACGCTTCCCAGCAGTATCAACAGTTTCAACCGCAATATCTGAGCGACGAGGAAGGTCTAGTCGCGTCACACAGCGACTGTAACAACTCTGGAAGCGATGAGAAGTCAGATTCCGTGAACTCGTTGAACTCTGTGAACACCTCGTccaaaaagaagaagaaaaagaagaaaaagaagaagaagaaatctGCGTACTCCATGGCACCGAACCGAGTGATCTGTCCGTATTGTCAAAGGCCGTTCCCTTGGACATCTTCTCTAAGGAGACACATTCTAACGCACACGGGACAAAAACCGTACCAGTGTGTTCACTGTTCTCTACTGTTCACCACCAAGTCGAACTGCGATCGTCACCTGTTGAGGAAACACAAGACGAACCCGAACAAGATGCGCAGGGCGAGGAACTCCTCGTCCCCTGACAGTCAGACTGTCGTCAGTAACAACAATTCCTTCTCCATGAGAAACGTCCCCGAAAGGCCTTACAAATGTAACCAGTGCCCCAGTTCGACATTCTCCACGTTGGGGAACTTAAAGAAGCATCGTTCGACGAAGCACGCACGGAAGATGAAGTCCAGGTCCGATACTCCGTCCAGTGAACCACAGAACAGTCCGCAGGAATGTTCCAAGCAAACTGAACAGAGTGATTACGACAGTCAGTCCTCGACTGTCTCCGAAGGGATGGAGACGTCCTCTGTGTCGGGACTCCCCAAATCGAATTCGAACACTTCACCGTCTACCAACGACACGCCTAGATCCAGGAGACCATCGCCAAGATCATCGCCTGGACCCAGTGATGTACCGTTCAAGTGCCACTTGTGCGACTGCGGATTCGCCGAGAGACAAGACTGTCTGGAACACATCAAGATGAACCATAAGAGATCTTACGAGATGCTAGTAGCCAAGGGAGCATTGGATATGGATATTGATACAGCGGAGGACCAACAACAGCCACCACCGCCCCAACACCCGAGCGACGGGGAAGAGAAAAGGGGCCGTTTCCCCGATTACAGTAACCGGAAGGTGGTCTGTGCTTTCTGCATGAGGAGGTTCTGGTCGGCGGAGGACCTGCGTCGGCACATGAGGACGCATACAGGCGAGAGACCGTTCTCCTGTGACATCTGCTGCAGGAGGTTCACTTTGAAGCATAGTATGCTAAGACACCGGAAGAAGCACGAATCTATCGATTCGACCATGTACGTAGGCACCAGCGGCGATGAGGATAACTCACCGACGCAACCACCAACCATTACACCTAGAAGCCAACAACAACAACCGGTACTAGTAGCAGCAAATTCTGGGAATACCAGAATACAGGACAGAATTTCGTTACCCACTGTTGTTCCAGTCGCAACTGGGGATGCAGCACCCAGTGGACTGATGAGATTCAATccgtatgaaaaattaacaacTTTAACGGGAAAACTGGCCAGCATTCCGCAAAATGTAAACCCAGACGCCAGTGAGAGTGCAGATAATGACCTGATCTCCAATCTGCTGGGTATACGGGATAAGAGCTTCATTGACCGGGTTCTTCAGGCGTCAGCCGACGATGCCGCCAAACTTCTAGGAGTGAAACGCAGCCACGAGTGA
Protein Sequence
MDYSTKVTVKSGPDQGIDNEAQADAASPPSSVELPESAHPCPACPTILPSSRELTNHLRGHNSPRSTDCSGEEDYCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHRSTSPHSCTDSDGSSDSEKPTKRRHMEEYNNNEIAKRNSPDFIVDRQEKSSSLKRKCTDYPSDTENQKRHKILLNNSRTEIKARPDDSQNVYNCPVCGRQDFATSALLEAHLERSHPEFPAKCDACNLSFKNHRVLNLHRFMIHFAEHSIGNTARNLRNSVVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHESDCGMSISQTRVIDDNQSRRDDFFAGLDLQNKAALTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPESNIKFNPSVSSSGSSGTFSSEYHEEEAQDAFAAEFRKMKLKGEFPCRLCTAIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERSSPRVIKDDVRKSLVYPNDRDELPHQAQLHYPSVPIDGRGDVRMIEEAKLHNPMSMHGNHYEKLDAFSRPGQPIELTQRNVDESRSGDTKQDYAKLDEDLESRSSEGSVSLVSDTKSDSHQRLQASPMNLKKGLNVSENIGEDGPLDLSMDVLDLSKKSKEKEDNDYTTASQDPYGKSQKELYNATSQLLLTEALLKAGQGSSQPTSLEALYANAHMIYRNFGTFPGGVGAGILPPYLFNPHVFGQEFSIKERLQKELVRGLQLTSGGTLVEPPIAAAGFTAFPQSRDINAQPPTEQSDYAKLISSKLASKALVNRDKPENHIPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLVQNLGQSASQATQSYPNILPKVEQPSTEYSKHPPISDQVKYAILAQQLKANKLEENDSEEELVIDEDPQDKDQESQDQKDKCTSLLRGQLEGLESAKEVVKEEADECTKSGDSTNTESANSDNGNDDTKMSDTEKPMETDEPCDDADRVFKSEPDEEKAEKMEDGTTDLASVSELLDNASQQYQQFQPQYLSDEEGLVASHSDCNNSGSDEKSDSVNSLNSVNTSSKKKKKKKKKKKKKSAYSMAPNRVICPYCQRPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKTNPNKMRRARNSSSPDSQTVVSNNNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKSRSDTPSSEPQNSPQECSKQTEQSDYDSQSSTVSEGMETSSVSGLPKSNSNTSPSTNDTPRSRRPSPRSSPGPSDVPFKCHLCDCGFAERQDCLEHIKMNHKRSYEMLVAKGALDMDIDTAEDQQQPPPPQHPSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEDNSPTQPPTITPRSQQQQPVLVAANSGNTRIQDRISLPTVVPVATGDAAPSGLMRFNPYEKLTTLTGKLASIPQNVNPDASESADNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE