Basic Information

Insect: Bombus bifarius
Gene Symbol: Rreb1
Assembly: GCA_011952205.1
Location: NW:1512516-1521179[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0056 0.36 10.7 0.2 1 23 72 94 72 94 0.96

2 16 0.00022 0.014 15.1 0.4 1 23 108 130 108 130 0.97

3 16 5.5e-07 3.5e-05 23.3 1.2 1 23 136 159 136 159 0.98

4 16 3.5 2.3e+02 1.9 0.1 1 8 254 261 254 278 0.78

5 16 0.049 3.2 7.7 3.0 2 23 284 306 284 306 0.95

6 16 1.3 82 3.2 0.6 1 19 362 380 362 382 0.89

7 16 0.36 23 5.0 0.1 1 23 495 517 495 517 0.96

8 16 1.9e-05 0.0012 18.4 0.3 1 23 526 548 526 548 0.98

9 16 0.00085 0.054 13.2 2.8 1 23 554 577 554 577 0.97

10 16 0.00031 0.02 14.6 3.0 1 23 959 982 959 982 0.97

11 16 0.00045 0.029 14.1 0.1 3 23 1259 1279 1257 1279 0.97

12 16 0.4 26 4.8 6.0 1 23 1285 1308 1285 1308 0.97

13 16 0.0028 0.18 11.6 2.2 1 23 1346 1370 1346 1370 0.97

14 16 4.4 2.8e+02 1.6 7.4 1 23 1454 1477 1454 1477 0.96

15 16 0.0077 0.49 10.2 0.4 2 23 1528 1549 1527 1549 0.94

16 16 0.91 58 3.7 8.2 1 23 1555 1577 1555 1577 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0056	0.36	10.7	0.2	1	23	72	94	72	94	0.96
2	16	0.00022	0.014	15.1	0.4	1	23	108	130	108	130	0.97
3	16	5.5e-07	3.5e-05	23.3	1.2	1	23	136	159	136	159	0.98
4	16	3.5	2.3e+02	1.9	0.1	1	8	254	261	254	278	0.78
5	16	0.049	3.2	7.7	3.0	2	23	284	306	284	306	0.95
6	16	1.3	82	3.2	0.6	1	19	362	380	362	382	0.89
7	16	0.36	23	5.0	0.1	1	23	495	517	495	517	0.96
8	16	1.9e-05	0.0012	18.4	0.3	1	23	526	548	526	548	0.98
9	16	0.00085	0.054	13.2	2.8	1	23	554	577	554	577	0.97
10	16	0.00031	0.02	14.6	3.0	1	23	959	982	959	982	0.97
11	16	0.00045	0.029	14.1	0.1	3	23	1259	1279	1257	1279	0.97
12	16	0.4	26	4.8	6.0	1	23	1285	1308	1285	1308	0.97
13	16	0.0028	0.18	11.6	2.2	1	23	1346	1370	1346	1370	0.97
14	16	4.4	2.8e+02	1.6	7.4	1	23	1454	1477	1454	1477	0.96
15	16	0.0077	0.49	10.2	0.4	2	23	1528	1549	1527	1549	0.94
16	16	0.91	58	3.7	8.2	1	23	1555	1577	1555	1577	0.98

Sequence Information

Coding Sequence: ATGAGGTTAAAAAACATCTACGAAATCTTCAGTCTTCTCGGTCATTCGAATTGTTTCGATACGCAGATAAAATTTCTAGTTACGTCAGTCGATATAACAGAACCCTTCAACGTTTCAGTTACTGTTAAGAACGGACCCACCCAGGAAAATGAGAACGAAGCACCAGCTGATGCTGCATCCTCACCATCTAGTGTTGAACTACCAGAAAGCGCACACCCATGTCCAGCTTGTTCGACCGTTTTGCCCACCTCCAGGGAGTTAACGAACCACCTACGCGGCCATAATTCGCCTCGCAGCACAGACTGTAGCGGCGAGGATGACTATTGCTGCGGCGTGTGCAATAAGGTGCTGAGCTCTGCAAGTTCCCTCGACAGACATGTGTTGGTGCACTCCGGGGAACGGCCGTTCAAATGCAAGTACTGTGAGATGGCGTTCACTACGAACGGCAATATGAACAGGCATTTGAGGACAGCGCACAGAGGCGCCTCGCCTAACAGCTGCACAGACTCCGAGGGTAGCAGCGACTCGGACAAATCATCCAGGCAGCGACATCTCGAGGAATACAACAACAACGAGATCACAAAAAGAAACTCGCCAAATATCGGGGACAAACGGGACGAGGAACAGACCTCGTCGTTAACTGGAAAGAGAAAGTATCCTAACTATGCGAGCGACAGCGAAACACAAAAGAGGCACAAGATTCTTCTAAGTAGCTCGAGAAGCGAGATGAAATCGAGATCGGACGACAACCAGAACGTTTACAATTGTCCAGTATGCGGGCGACAGGATTTTGCCACTGGCGCCATCTTAGAATCGCATCTGGAACGAAGTCATCCGGAATTCCCCGCGAAATGCGACACGTGCAACTTGTCGTTCAAAAACCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTCGCGGAACACTCGTTGGGAAATACCACGAGAAATCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTCTCGTCCGATAAGTTCCCAGCAATAGCTAGAGCTGTCTGCGAACAATCGCTTCACCGGCCAGCTTCTGGCGAGGTAGCCAAATTCCAATGCTCCAAATGTCTGCGGGCATTCCCTTGTAGATCCGCGTTGGACGCCCACGAAACTGACTGCGGCACGATGAATTTGCAAAGCAGAACAACCGACGATAGCCAATCGAGAAGAGACGATTTCTTCGCTGGCTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAGGAAGGCAAAGATCTTGCCGATATCCAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAATTTTCGATCAGACACCAGCACACCCGAGAACAACATCAAATTTAATACCAGTGTAAACTCTTCTGGTAGTTCAAGTACGTATTGCACAGAGTACCACGAGGAGGAAGCTCAAGACGCGTTTTCTGCAGAGttcagaaaaatgaaattgaaaggGGAGTTCCCTTGCAGGCTCTGTTCCTCGATATTTCCTAATCTAAGAGCCCTAAAAGGTCACAACAGGGCGCACATGGGCGTGGGACCTGGCATGCCATATCCTTGTAATATGTGCCCTTATACCAGCACTGATAAAGCGACTCTGGTGAGGCATCTGAGGTCTCACAATGGCGACAGACCTTACGAATGCTCTCTCTGCAATTACGCTTTCACAACTAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGAGAAGACATTAAGAGCGTTCTCATCTATcatccaaatgaagattctaCGAACGAGAACGTGGAACGTGGAAACTCACCCAGAGTTTTGAAGGATGAAGTGAGGAAGAGCCTGGTATATCCGCAAGAACGCGAAGATCTTCACCACCAGGCGCAAATGCATTATCCTCCGGTTTCTATGGAGGTAAGAGGTGAGATCAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCGATGTCGATATACAGCACTAGCCACTTTGAAAAAAATGATGCGTTTTCAAGACATGGTCAGCCTTTGGAGCTGACCCAAAGGAACTCCGAGGAGACAAAACCTGGTCAAGATGCCAAATCGGATTATTCGAAGTTGGACGACGATTTGGAGTCGAGATCGTCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTAAAGAAAGGTCTCAACATATCGGAAAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTGGATCTCAGCAAGAAGTCGAAGGAGAAGGAGGACGATAACTTCGCCGCGGCTCACGAACATTTTGGAAAAAACCAAAAAGATTTGTACAGTGCTACCAGTCAATTATTGTTGACCGAGGCTTTGTTGAAGGCTGGCCAGGGTAGCTCTCAACCTACATCTCTGGAAGCTCTGTACGCTAACGCAATCTACAGAAACTTCGGTACATTCCCTGGTAGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAATCCTCATGTCTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGTCTACAGTTGACAAGTGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCGCGGGATTTACCACTTTTTCTCAAAACAGAGACATGAATTCCCAGTCTCATTCAACAACCGACCAAAGTGAATATGCCAAATTAATATCTTCTAAGATGGCCAACAAGAGTCTAACAACCCGCGATAAATCAGACAATCTCCCCTCGTCCAATTCTGTGAAGATGGTGATCAAAAATGGAGTCCTGATGCCTAAACAAAAGCAACGAAGGTACAGAACTGAGAGGCCTTTTACCTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAACAACATCCTCAGCACTGGAGCCAGCGACCCAGAGGAGGTCACTCGACAAGGGGAAGACCACCTTCCAGCCATCCTACGCTGATTCAAAACCTTGGACAGGCAACTTCTCAAGGCAGTCAATCGTACAACAATATCCTGCCAAAAGTGGAACAGTCAACGAATCCGGAATTTACGAGGCATTCTATCTCCGACCATGTGAAGTACGCTATCCTGGCACAGCAATTAAAGGCAAACAAAATGGAAGACAATGACTCTGAAGAAGAACTGGTCATAGACGAAGGGCCAcaggagaaagaaaatcaaGAATCTCAGGATCAAAAGGAGAAGAGTCTGTTGAGAGGACAATTGGAAGCCACAGAATCTACGAAAGAAACTGTAGTGAAAGAAGAAGCCATGGAATGTTCAGACGATGGCCCAAACGAGACAAATGTTGAGCTGGAGAAGAACAAACAAACTGTTACTGAACAACAGAAAAAATCTGACACGGAGAAGGCTACTGTGACGGAAAATTCAGTTGAAAAGAATCCTGACAGAGTGATCAAAACGGAATCAGTTAATATGAACAGCGAGAAGATGGAGGATGGAGCACCTGATCTCGCTAGCGTGTCAGAACTGTTAGACAATGCCTCCCAACAATACCAGCAGTTTCAACCCCAGTATTTAAGCGATGAAGAAGGTCTAGTAGCATCGAACAGTGATTGCAATAATTCTGGCAGTGATGAGAAATCCGACTCTGTAAATTCATCACATTCGACGAACGcgtcgaagaaaaaaaagaaaaagaagaaaaaaaagaagaaatctgCATATTCAATGGCCCCGAACAGAGTAATCTGTCCATACTGTGAACGACCATTTCCATGGACCTCGTCTCTCAGACGACATATTTTAACACACACTGGACAGAAACCTTATCAGTGCGTTCACTGTTCGTTGCTATTCACAACGAAATCCAACTGTGACCGTCATTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTTAGGAACTCTTCTTCTCCAGATTCTCAAGCGGTCATCAGCAATAGTAACTCGTTCTCCATGAGGAACGTTCCTGAAAGACCCTACAAGTGCAATCAGTGTCCCAGCTCAACATTTTCAACGTTGGGTAACCTAAAGAAACATCGTTCCACTAAACACGCTCGGAAGATGAAGACCAGATCGGACACTCCATCCAGTGAACCTCAAACCAGTCCACAGGAGTGTCCAAAGCCGAATAACGAACAAACTGATTATGATAGTCAGTCTTCGAGCGTGTCTGAAGGGATAGAAACTTCTTCGATGCCAGGACTTACCAAATCGAATTCTGGCGCTTCACAATTGGCCAACGAAACAGCTAGGTCAAGGAGACCTTCACCGAGATCATCACCTGGGCCCAGTGATGTGCCTTTTAAGTGCCACTTGTGCGATTGTGGTTTCGCAGAACGACACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGACATGGACATCGACGCGGTTGAAGACCAACAACAACCACCGCCGCAACATCATACCAGCGACGGAGAAGAAAAACGGGGACGTTTCCCAGACTATAGTAACAGGAAGGTTGTATGTGCATTCTGTATGAGGCGGTTCTGGTCTGCAGAGGATCTACGGCGCCATATGAGAACACACACCGGAGAACGACCTTTCTCCTGCGATATATGCTGCAGGAGATTCACCTTGAAACATAGTATGCTGCGGCACAGAAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAATTCACCTGCACAGCCACCTACGATCACACCACGAAGTCAACAGCAGCAACAAATTCTGGTGACAGCCAACAACGCAAATTCCCGTATTCAAGACAGAATCTCTTTACCAACTGTTACTCCAGTCGCGACCGGTGATGCAGCCCCGAGTGGATTAATAAGATTCAATCCATACGAGAAATTAACCACTCTGACAGGAAAATTGGCCAGTATTCCATCAAACGCAAATCCAGATGCAGAGAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCCGCCAAGTTATTAGGAGTAAAGCGTAGCCATGAGTGA
Protein Sequence: MRLKNIYEIFSLLGHSNCFDTQIKFLVTSVDITEPFNVSVTVKNGPTQENENEAPADAASSPSSVELPESAHPCPACSTVLPTSRELTNHLRGHNSPRSTDCSGEDDYCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDKRDEEQTSSLTGKRKYPNYASDSETQKRHKILLSSSRSEMKSRSDDNQNVYNCPVCGRQDFATGAILESHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSLGNTTRNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQNFRSDTSTPENNIKFNTSVNSSGSSSTYCTEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEVRKSLVYPQEREDLHHQAQMHYPPVSMEVRGEIRIIEEAKLQNSSMSIYSTSHFEKNDAFSRHGQPLELTQRNSEETKPGQDAKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNISENIGEDGPLDLSMDVLDLSKKSKEKEDDNFAAAHEHFGKNQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFGTFPGSVGAGILPPYMFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFTTFSQNRDMNSQSHSTTDQSEYAKLISSKMANKSLTTRDKSDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGSQSYNNILPKVEQSTNPEFTRHSISDHVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKENQESQDQKEKSLLRGQLEATESTKETVVKEEAMECSDDGPNETNVELEKNKQTVTEQQKKSDTEKATVTENSVEKNPDRVIKTESVNMNSEKMEDGAPDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVISNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSDTPSSEPQTSPQECPKPNNEQTDYDSQSSSVSEGIETSSMPGLTKSNSGASQLANETARSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQQILVTANNANSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00215937; iTF_00231522; iTF_00229577; iTF_00228875; iTF_00219341; iTF_00227502; iTF_00232175; iTF_00222096; iTF_00226800; iTF_00232790; iTF_00220026; iTF_00230266; iTF_00225468; iTF_00218626; iTF_00226123; iTF_00217970; iTF_00215255; iTF_00230875;
80% Identity: -