Basic Information

Insect: Halictus rubicundus
Gene Symbol: RREB1
Assembly: GCA_028454235.1
Location: CM052183.1:9349036-9355337[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0047 0.39 11.2 0.1 1 23 45 67 45 67 0.96

2 16 0.00028 0.023 15.1 0.4 1 23 81 103 81 103 0.97

3 16 6.9e-07 5.6e-05 23.3 1.2 1 23 109 132 109 132 0.98

4 16 0.012 0.96 10.0 0.2 1 23 222 246 222 246 0.95

5 16 0.27 22 5.7 2.1 2 23 252 274 252 274 0.94

6 16 1.5 1.3e+02 3.3 0.6 1 19 330 348 330 350 0.89

7 16 0.16 13 6.4 0.1 1 23 464 486 464 486 0.96

8 16 2.4e-05 0.002 18.4 0.3 1 23 495 517 495 517 0.98

9 16 0.0011 0.087 13.3 2.8 1 23 523 546 523 546 0.97

10 16 0.00039 0.032 14.6 3.0 1 23 929 952 929 952 0.97

11 16 0.00057 0.046 14.1 0.1 3 23 1218 1238 1216 1238 0.97

12 16 0.51 41 4.9 6.0 1 23 1244 1267 1244 1267 0.97

13 16 0.0036 0.29 11.6 2.2 1 23 1305 1329 1305 1329 0.97

14 16 0.31 26 5.5 6.3 1 23 1412 1435 1412 1435 0.97

15 16 0.0097 0.79 10.3 0.4 2 23 1486 1507 1485 1507 0.94

16 16 1.1 93 3.7 8.2 1 23 1513 1535 1513 1535 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0047	0.39	11.2	0.1	1	23	45	67	45	67	0.96
2	16	0.00028	0.023	15.1	0.4	1	23	81	103	81	103	0.97
3	16	6.9e-07	5.6e-05	23.3	1.2	1	23	109	132	109	132	0.98
4	16	0.012	0.96	10.0	0.2	1	23	222	246	222	246	0.95
5	16	0.27	22	5.7	2.1	2	23	252	274	252	274	0.94
6	16	1.5	1.3e+02	3.3	0.6	1	19	330	348	330	350	0.89
7	16	0.16	13	6.4	0.1	1	23	464	486	464	486	0.96
8	16	2.4e-05	0.002	18.4	0.3	1	23	495	517	495	517	0.98
9	16	0.0011	0.087	13.3	2.8	1	23	523	546	523	546	0.97
10	16	0.00039	0.032	14.6	3.0	1	23	929	952	929	952	0.97
11	16	0.00057	0.046	14.1	0.1	3	23	1218	1238	1216	1238	0.97
12	16	0.51	41	4.9	6.0	1	23	1244	1267	1244	1267	0.97
13	16	0.0036	0.29	11.6	2.2	1	23	1305	1329	1305	1329	0.97
14	16	0.31	26	5.5	6.3	1	23	1412	1435	1412	1435	0.97
15	16	0.0097	0.79	10.3	0.4	2	23	1486	1507	1485	1507	0.94
16	16	1.1	93	3.7	8.2	1	23	1513	1535	1513	1535	0.98

Sequence Information

Coding Sequence: ATGAACATCACAGCTTCTTCTGAAATATCGAATTGTTTTACTGTGAAGTGCAGCCCTGACCAGGGTCGCGACAACGAAGCCCAAGTTGACGCAGCGTCGCCACTATCAAGTATGGAGTTACCAGAAAGTGCTCACCCCTGTCCAGCATGCCCCACGGTACTGCCTAGCTCCCGAGAGCTGACGAACCACCTGCGCGGCCACAACTCTCCGCGCAGTACTGATTGCAGCGGCGAGGAGGATTATTGTTGCGGCGTGTGCAACAAGGTGCTGAGCTCGGCGAGCTCATTGGACAGACACGTGCTAGTGCACTCCGGCGAACGACCGTTCAAATGCAAATACTGCGAGATGGCGTTCACAACCAACGGCAACATGAACAGACACCTGCGAACAGCACACTGTTCAACCTCTTCGCACAGCTGCACCGACTCGGAGGGTAGCAGCGACTCCGAGAAACTGTCGAAGAGAAACATCGAGGAGTACAACAACAACGAGATCGCGAAGAGGAAATCGCCCGACTTCATCGACCAACAGGACAAAACTCCCAGTCTGAAGCGGAAATGCACAGACTATCTGCGCGACATCGAGAACCAGAAAAGACACAAGATCCTGCTGAACAACTCGCGGCCTGAGGTCAAGGCCAGACCTGACGATAACCAGAACGTGTACAATTGCCCTGTTTGCGGCAGACAGGACTTCGCGACCAACGCGCTCCTGGAGGCTCATCTGGAGCGCTGCCACCCGGAGTTCCCGGCGAAATGCGAGGCCTGCAACCTCTCCTTCAAAAACCATCGGGTGCTGAATCTGCACCGATTCATGATCCACTTCGCGGACCACTCGACCGGCAACACCGCGAGGAACCTGCGCAACTCCGTGGTCGGCTTCAACGATCTGACCTTCGTCGACTTCTCCTCGGGCAAATTCCCGGCGATCGCTCGAGCGGTCTGCGAGCAATCGCTTCATCGGCCAGCCTCTGGAGAGGTGGCAAAATTCCAATGCTCCAAATGTCTCAGAGCGTTCCCCTGCAGATCAGCCTTGGACGCTCACGAAAGCGACTGTGGCACAACTAACACCCCGCCCAGGGTGATCGATGACAACCAGTCGAGGAGAGACGACTTCTTCGCCGGCCTGGACCTGCAGAACAAGGCTGCCATGGCCGAGGCTAAAGAGGGCAAGGACCTGGCCGATATTCAGAGCATCATTTCCGTCACCTCGGGTCCCATCCTGCAGAACTTCCCGAGGTCGGACGCCAGCACTCCTGAAAACAACATCAAGTTCAACCTGAATCTTAGCTCTTCGAGCTCCTCCGGCGTATACTCTGCAGAGTCCCACGAAGAGGAGGCGCAGGACGCGTTCGCGGCCGAGTTCAGGAAGATGAAGCTGAAGGGTGAATTCCCCTGTAGACTGTGCACCGCGATCTTCCCGAACCTGAGAGCGCTGAAAGGCCACAACAGGGCTCACATGGGAGTCGGACCTGGAATGCCGTACCCCTGCAACATGTGTCCCTACACGAGCACGGACAAAGCGACCCTGGTAAGACATCTTAGATCACATAATGGAGACAGGCCTTACGAGTGCTCATTGTGCAATTATGCGTTTACAACAAAGGCCAACTGCGAGCGGCACGTGAGGAACAGACACGGAAAGATCGATAAAGAGGACATCAAAAACCTTCTGATCTATCATCCGAACGAGGACTCGACAACCGACAACATGGAGAGAGGCTCGCCCAGGGTGATGAAAGACGATCCGAGGAAGGTCTTGATGTACCCTAACGAGCGGGACGAGCTGCAGCATCAGGTGCAGATGCACTATCCGTCGGTACCGATGGAGAGCAGCAGCCGCAGCGAGATTAGAATCATCGAGGAGGCGAAGCTGCACAATTCGCTGTCCCTGCACAACAGCCACTACGAGAATGCCGAGGCGTCGTCGTTCTCGATGCCGAGCCAACTGCCGATGGAGTTGACGAAGAACGTGGACGAAGGAAAGTCTGCGGACATCGAGCAGGATTACATGAAGCTCGAGGAGGACATGGAGTCGATGTCCTCTGGAGGCGGCGTGTCTCTAGTCAGTGATACCAAATCCGATTCGCACCAAAGAATTCAAGCTAGTCCGATGAATCTGAAGAAGGCTCTGACGGTATCGGAGACTGTTGGCGAGGACGGTCCTCTGGATCTGTCTATGGATGTTCTAGATCTCAGTAAGAAGACGAAGGAGAAGGAGGACGGGGACTACTCGGCCTCGCAGGATCAGTATGGAAAGAGCCAAAAGGAGCTGTACAATGCCACCAGTCAGCTATTGATCACCGAGGCTCTGCTGAAGGCTGGCCAGGGGAACTCGCAGCCTTCTTCCCTGGAGGCGCTTTATGCGAATGCTCACCTGATCTACAGAAACTTTGGATCGTTCCCCGGAGGTGTAGGAGCGGGAATATTACCACCGTATTTGTTCAATCCCCACGTGTTCGGCCAGGACTTTGCGATGAAAGAGAGACTGCAGAAGGAGCTGGTCAGGGGCCTGCAGCTCACTAGCGGCGGCACGTTGGTGGAGCCTCCGATCGGGACCACCGGGTTCAACGCCTATCCTCAAGGCAGAGACATGAACCCGCAATCGGCGAATGAACAGAACGACTACGCGAAGCTGATCTCATCGAAGCTGGCCAGCAAGGCGCTGGCTAATCGCGACAAACCTGAGAACCACATACCCCCGTCGAACTCTGTGAAAATGGTGATCAAGAACGGCGTGCTGATGCCCAAACAGAAGCAGAGACGGTACAGAACTGAGAGACCGTTCACCTGTGAACATTGCTCCGCGAGATTCACGTTGAGGAGCAACATGGAGAGACACATTAAACAACAGCATCCGCAGCACTGGAGCCAGAGACCCAGAGGAGGACACTCGACCAGAGGAAGACCTCCTTCCAGTCATCCGACTTTGTTGCAGAATCTGGGGCAATCATCCTCCCAGGCGGCCCAGGCGTACCCTAACATACTGCCCAAGGCCGATCAATCGAGCGGAGAGTACTCCGCGAAACACCCCATATCGGATCAGGTGAAATACGCGATCTTAGCACAGCAGCTGAAAGCTAACAAGATCGAGGACAACGATTCCGAAGAGGAGCTGGTGATCGACGAGGGTCCCCAGGAGAAGGAGCAAGAATCTCAAAAGGAGAAGTGCACTAGCTTGTTGAGGGGCCAGTTGGAAGGATCAGAGGTTGCAAAGGAGACGAAAGAAGATGTCGAGGAGTGCGCTAAAGAGGACACGACCAATACTGACTCTATGAACAGCGACAACGGGAATGAGGACAAGATGTCGGACGCGGAGCAATCGATGGAGACCAATGAGTTGAGTGATCAGAGAATCATCAAGCCTGAACAGGAGGAAGAGAAGTCGGAGAAGACTGAAGACGGTGCCCCTGACTTGGCTAGTGTATCGGAATTGTTGGACAATGCCTCGCAGCAGTACCAACAGTTCCAGCCTCAGTATCTGAGCGATGAAGAAGGCTTGGTCGCATCGAACAGCGACTGCAACAACTCCGGCAGCGATGAGAAGTCGGACTCCGTGAACTCGTTGAACTCCGAGAGCCCCTCGAAGAAGAAAAAGAAGAAGAAAATGAAGAAGAAGTCCGCATACTCGATGGCCCCGAACCGAGTGATCTGTCCGTACTGCGAGAGGCCATTCCCCTGGACATCATCTCTACGACGACATATCCTGACGCACACCGGACAGAAGCCGTACCAGTGCGTACACTGTTCGCTGCTCTTCACCACCAAGTCGAACTGCGACCGCCATTTGCTGAGAAAGCACAAGGCTAACCCGAACAAGATCCGCAGGGTCCGCAACTCCTCGTCGCCGGACAGTCAAGCGGCGATCAGCAACAACAACTCGTTCTCGATGAGAAATGTGCCCGAGAGGCCATACAAGTGCAATCAGTGTCCCAGCTCGACCTTCTCCACTCTGGGTAATTTGAAGAAGCATCGCTCGACGAAGCACGCGCGTAAGATGAAGTCCAGATCCGATACCCCATCCAGCGAGCCTCAGAACAGTCCTCAAGAATGCTCGAAACAGAACGAACAGACCGATTACGACAGCCAGTCGTCCAGCGTCTCCGATGGCATGGAGACCACTTCAGTGTCAGGAGTACCGAAGACGAACTTGAACACTTTGCCGTCCACCAATGACGTAGCCAGATCCAGAAGACCTTCACCGAGATCGTCGCCCGGACCAAGCGATGTACCGTTTAAGTGTCACCTGTGCGACTGCGGATTCTCCGACAGGCAGGATTGTCTGGAACACATCAAGATGAACCATAAGAGATCGTACGAGATGCTGGTGGCCAAGGGAGCCTTGGACATGGATATTGACACCGTGGAGGACCAGCAACAACCGCCTCCTTCTCAGCATCCCAGCGACGGCGAAGAGAAGAGGGGCCGATTCCCTGACTACAGCAACAGAAAGGTGGTCTGTGCCTTCTGTATGAGGCGGTTCTGGTCTGCGGAGGACTTACGTCGACACATGAGGACGCACACTGGCGAGAGGCCATTCTCCTGCGACATCTGCTGCAGGAGGTTCACGCTGAAGCACAGCATGCTGCGGCACAGGAAGAAGCACGAGTCGGTGGACTCGACGATGTACGTGGGCACCAGCGGGGACGAAGAGAACTCTCCAGCGCAGCCGCCTACCATAGCGCCGAGGAGTCAACAGCAACAACCACCGGTCCTGGTGGCTACCAACTCCGGAAATCCTAGGATACAGGATAGAATATCGTTGCCAAACGTGGCACCGGTTGCGACAGGGGATGCCGCGCCTAGCGGTCTCGTGCGTTTCAATCCCTACGAGAAGCTGACAACGTTGACCGGTAAGCTGGCTAGTATTCCGCAAAACGCGAATCCCGAAGCCAGCGAGAGCACTGACAACGACCTAATCTCGAATCTATTGGGGATCAGGGATAAGAACTTCATAGACAGAGTGCTCCAAGCGTCCGCCGACGACGCAGCCAAACTTCTCGGGGTGAAACACAATCATGAGTGA
Protein Sequence: MNITASSEISNCFTVKCSPDQGRDNEAQVDAASPLSSMELPESAHPCPACPTVLPSSRELTNHLRGHNSPRSTDCSGEEDYCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHCSTSSHSCTDSEGSSDSEKLSKRNIEEYNNNEIAKRKSPDFIDQQDKTPSLKRKCTDYLRDIENQKRHKILLNNSRPEVKARPDDNQNVYNCPVCGRQDFATNALLEAHLERCHPEFPAKCEACNLSFKNHRVLNLHRFMIHFADHSTGNTARNLRNSVVGFNDLTFVDFSSGKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHESDCGTTNTPPRVIDDNQSRRDDFFAGLDLQNKAAMAEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPENNIKFNLNLSSSSSSGVYSAESHEEEAQDAFAAEFRKMKLKGEFPCRLCTAIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKIDKEDIKNLLIYHPNEDSTTDNMERGSPRVMKDDPRKVLMYPNERDELQHQVQMHYPSVPMESSSRSEIRIIEEAKLHNSLSLHNSHYENAEASSFSMPSQLPMELTKNVDEGKSADIEQDYMKLEEDMESMSSGGGVSLVSDTKSDSHQRIQASPMNLKKALTVSETVGEDGPLDLSMDVLDLSKKTKEKEDGDYSASQDQYGKSQKELYNATSQLLITEALLKAGQGNSQPSSLEALYANAHLIYRNFGSFPGGVGAGILPPYLFNPHVFGQDFAMKERLQKELVRGLQLTSGGTLVEPPIGTTGFNAYPQGRDMNPQSANEQNDYAKLISSKLASKALANRDKPENHIPPSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLLQNLGQSSSQAAQAYPNILPKADQSSGEYSAKHPISDQVKYAILAQQLKANKIEDNDSEEELVIDEGPQEKEQESQKEKCTSLLRGQLEGSEVAKETKEDVEECAKEDTTNTDSMNSDNGNEDKMSDAEQSMETNELSDQRIIKPEQEEEKSEKTEDGAPDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSLNSESPSKKKKKKKMKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKIRRVRNSSSPDSQAAISNNNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKSRSDTPSSEPQNSPQECSKQNEQTDYDSQSSSVSDGMETTSVSGVPKTNLNTLPSTNDVARSRRPSPRSSPGPSDVPFKCHLCDCGFSDRQDCLEHIKMNHKRSYEMLVAKGALDMDIDTVEDQQQPPPSQHPSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESVDSTMYVGTSGDEENSPAQPPTIAPRSQQQQPPVLVATNSGNPRIQDRISLPNVAPVATGDAAPSGLVRFNPYEKLTTLTGKLASIPQNANPEASESTDNDLISNLLGIRDKNFIDRVLQASADDAAKLLGVKHNHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00762742;
80% Identity: -