Basic Information

Insect: Bombus haemorrhoidalis
Gene Symbol: Rreb1
Assembly: GCA_014825975.1
Location: CM026163.1:8894292-8901631[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0068 0.62 10.7 0.2 1 23 39 61 39 61 0.96

2 15 0.0059 0.53 10.9 1.2 1 20 75 94 75 100 0.93

3 15 0.0097 0.88 10.2 0.0 1 23 195 219 195 219 0.95

4 15 0.061 5.5 7.7 3.0 2 23 225 247 225 247 0.95

5 15 1.6 1.4e+02 3.3 0.6 1 19 303 321 303 323 0.89

6 15 0.43 39 5.1 0.2 1 23 436 458 436 458 0.96

7 15 2.4e-05 0.0022 18.5 0.3 1 23 467 489 467 489 0.98

8 15 0.001 0.094 13.3 2.8 1 23 495 518 495 518 0.97

9 15 0.00039 0.035 14.7 3.0 1 23 900 923 900 923 0.97

10 15 0.00056 0.05 14.2 0.1 3 23 1200 1220 1198 1220 0.97

11 15 0.49 45 4.9 6.0 1 23 1226 1249 1226 1249 0.97

12 15 0.0035 0.31 11.6 2.2 1 23 1287 1311 1287 1311 0.97

13 15 5.4 4.9e+02 1.6 7.4 1 23 1395 1418 1395 1418 0.96

14 15 0.0094 0.85 10.3 0.4 2 23 1469 1490 1468 1490 0.94

15 15 1.1 1e+02 3.8 8.2 1 23 1496 1518 1496 1518 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0068	0.62	10.7	0.2	1	23	39	61	39	61	0.96
2	15	0.0059	0.53	10.9	1.2	1	20	75	94	75	100	0.93
3	15	0.0097	0.88	10.2	0.0	1	23	195	219	195	219	0.95
4	15	0.061	5.5	7.7	3.0	2	23	225	247	225	247	0.95
5	15	1.6	1.4e+02	3.3	0.6	1	19	303	321	303	323	0.89
6	15	0.43	39	5.1	0.2	1	23	436	458	436	458	0.96
7	15	2.4e-05	0.0022	18.5	0.3	1	23	467	489	467	489	0.98
8	15	0.001	0.094	13.3	2.8	1	23	495	518	495	518	0.97
9	15	0.00039	0.035	14.7	3.0	1	23	900	923	900	923	0.97
10	15	0.00056	0.05	14.2	0.1	3	23	1200	1220	1198	1220	0.97
11	15	0.49	45	4.9	6.0	1	23	1226	1249	1226	1249	0.97
12	15	0.0035	0.31	11.6	2.2	1	23	1287	1311	1287	1311	0.97
13	15	5.4	4.9e+02	1.6	7.4	1	23	1395	1418	1395	1418	0.96
14	15	0.0094	0.85	10.3	0.4	2	23	1469	1490	1468	1490	0.94
15	15	1.1	1e+02	3.8	8.2	1	23	1496	1518	1496	1518	0.98

Sequence Information

Coding Sequence: ATGGACGACGTACGACGCTTTACTGTTAAGAACGGACCCACCCAGGAAAATGAGAACGAAGCACCAGCCGATGCTGCATCCTCACCATCTAGTGTTGAACTACCAGAAAGCGCACACCCATGTCCAGCTTGTTCGACCGTTTTGCCCACCTCCAGGGAGTTAACGAACCACCTACGCGGCCATAATTCGCCTCGCAGCACAGACTGTAGCGGCGAGGATGACTATTGCTGCGGCGTGTGCAATAAGGTGCTGAGCTCTGCAAGTTCCCTCGACAGACATGTGCATTTGAGGACAGCGCACAGAGGCGCCTCGCCTAACAGCTGCACCGACTCCGAGGGTAGCAGCGACTCGGACAAATCATCCAGGCAGCGACATCTCGAGGAATACAACAACAACGAGATCACAAAAAGAAACTCGCCAAATATCGGAGACAGACGGGACGAGGAACAGACCTCGTCGTTAACTGGAAAGAGAAAGTGCCCTAACTATGCGAGCGACAGCGAAACACAGAAGAGGCACAAGATCCTTCTAAATAGCTCGAGAAGCGAGATGAAATCGAGACCGGACGACAACCAGAACATTTACAATTGTCCGGTATGCGGGCGACAAGATTTTGCCACTAGCGCCCTCTTAGAAGCGCATCTGGAACGAAGTCATCCGGAATTCCCCGCAAAATGTGACACGTGCAACTTGTCGTTCAAAAACCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTCGCGGAACACTCGATGGGAAATACCGCGAGAAATCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTCTCGTCCGATAAGTTCCCAGCAATAGCGAGAGCTGTCTGCGAACAATCGCTTCACCGGCCAGCTTCTGGCGAGGTAGCTAAATTCCAATGCTCCAAATGTCTGCGAGCATTCCCTTGTAGATCCGCGTTGGACGCCCACGAAACTGACTGCGGCACGATGAATTTACAAAGCAGAACAACCGACGATAGCCAATCGAGAAGAGACGATTTCTTCGCTGGCTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAGGAAGGCAAAGATCTTGCCGATATCCAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAGTTTCCGATCAGACACCAGTACACCCGAGAACAACATCAAATTTAATACCAGTGTAAACTCTTCTGGTAGTTCAAGTACGTATTGCGCAGAGTACCACGAGGAGGAAGCTCAAGACGCGTTTTCTGCGGAGTTCAGAAAAATGAAATTGAAAGGGGAGTTCCCTTGCAGGCTTTGTACCTCGATATTTCCTAATCTAAGAGCCCTGAAAGGTCACAACAGGGCGCACATGGGCGTGGGACCTGGCATGCCATATCCCTGTAATATGTGCCCTTATACCAGCACTGATAAAGCGACTCTGGTGAGGCATCTGCGGTCTCACAATGGCGACAGACCTTACGAATGCTCTCTCTGCAATTACGCATTCACGACTAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGGGAAGACATTAAGAGCGTTCTCATTTATCATCCGAATGAAGATTCTACGAACGAGAACGTTGAACGTGGAAACTCACCGAGAGTTTTGAAGGATGAAGTGAGGAAGAGCCTAGTATATCCGCCAGAACGCGAAGATCTTCATCATCAGGCGCAAATACATTATCCTCCGGTTTCTATGGAGGTAAGAGGTGAGATTAGAATAATAGAAGAGGCGAAGCTGCAAAACTCCTCGATGTCGTTATACGGCACTAGCCACTTTGAAAAAAATGATGCGTTTTCAAGGCATGGTCAGCCTTTGGAGCTGACCCAAAGGAACTCCGAAGAGACAAAACCTGGTCAAGATGCCAAATCGGATTATTCGAAGTTGGACGACGATTTGGAGTCGAGATCGTCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTAAAGAAAGGTCTCAACATATCGGAAAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTGGATCTCAGCAAGAAGTCGAAGGAGAAGGAGGACGATAACTTCGCCGCGGCTCACGAACAATTTGGAAAGAACCAAAAAGATTTGTACAGTGCTACCAGTCAATTATTGTTGACCGAGGCTTTGTTGAAGGCTGGCCAGGGTAGCTCTCAACCTACGTCTCTGGAAGCTCTGTACGCTAACGCAATCTACAGAAACTTCAGCACATTCCCTGGTAGCGTAGGAGCTGGGATATTGCCACCGTACATGTTCAATCCTCATGTCTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAAAAAGAATTGGTCAGAGGTCTACAGTTGACAAGTGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCGCGGGATTTACCACCTTCTCTCAAAATAGAGACATGAATTCCCAGTCTCATTCAACAACCGACCAAAGTGAATATGCCAAATTAATATCTTCTAAGATGGCCAACAAGAGTCTGACAACCCGCGATAAAGCAGACAGTCTGCCCTCGTCCAATTCTGTGAAGATGGTGATCAAAAATGGAGTCCTGATGCCTAAACAAAAGCAACGAAGGTACAGAACTGAGAGGCCTTTTACCTGTGAACATTGCTCAGCGAGATTTACTTTAAGGAGCAATATGGAAAGGCACATTAAACAACAACATCCTCAGCACTGGAGCCAGCGACCCAGAGGAGGTCACTCGACAAGGGGAAGACCACCTTCCAGCCATCCTACGCTGATTCAAAACCTTGGACAGGCAACTTCTCAAGGCAGTCAATCGTACAACAATATCCTGCCAAAAGTGGAACAGTCAACGAATCCGGAATTTACGAGGCATTCTATCTCCGACCAAGTGAAGTACGCTATCCTGGCACAGCAATTAAAGGCAAACAAAATGGAAGACAATGACTCTGAAGAAGAACTGGTAATAGACGAAGGGCCCCAGGAGAAAGAAAATCAAGAATCTCAGGATCAAAGGGAGAAGAGTCTGTTGAGAGGACAATTGGAAGCTACAGAATCTATGAAAGAAACTGTAGTGAAAGAAGAAGCCATGGAATGTTCAAACGATGGCCCGAACGAAACAAACGTTGAGCTGGAGAAGAACGAACAAACTGTTACTGAACAACAGAAAAAATCTGACACGGAGAAGGCTACTGTGACGGAAAATTCTGTTGATAAGAATCCTGACAGAGTGCTTAAAACGGAATCAGTTAATATGAACAGCGAGAAGATGGAGGATGGAGCAACTGATCTCGCTAGCGTGTCAGAACTGTTAGACAATGCCTCCCAACAATACCAACAGTTTCAACCCCAATATTTAAGCGACGAAGAAGGTCTAGTAGCATCGAACAGCGATTGCAATAATTCTGGCAGTGATGAGAAATCCGACTCTGTAAATTCGTCACATTCGACGAACGCGTCGAAGAAAAAGAAGAAAAAGAAGAAAAAAAAGAAGAAATCAGCGTATTCAATGGCCCCGAATAGAGTAATCTGTCCATACTGTGAAAGACCATTCCCATGGACCTCGTCTCTCAGACGACATATTTTGACACACACTGGACAGAAACCTTATCAATGCGTTCACTGTTCGTTGCTATTCACGACGAAGTCCAACTGCGACCGTCACTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTCAGAAACTCTTCTTCTCCAGATTCCCAAGCGGTCATCAACAATAGCAACTCGTTCTCCATGAGGAACGTTCCTGAAAGACCGTACAAGTGCAATCAGTGTCCCAGCTCAACATTCTCAACGTTGGGTAACCTAAAAAAACATCGTTCCACTAAACACGCTCGGAAAATGAAGACTAGGTCGGACACTCCATCCAGTGAACCTCAAACCAGCCCACAGGAGTGTCCAAAGCCTAATAACGAACAAACTGATTATGATAGTCAGTCTTCGAGCGTGTCCGAAGGGATAGAAACTTCTTCGATGCCAGGACTTACCAAATCGAATTCTAACGCTTCACAATTGGCCAACGAAACAGCTAGGTCAAGGAGACCTTCACCGAGATCATCACCTGGGCCCAGTGATGTTCCTTTTAAGTGCCACTTGTGCGACTGTGGTTTCGCAGAACGACACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGACATGGACATCGACGCGGTTGAAGACCAGCAACAACCGCCTCCACAACATCATACCAGCGACGGAGAAGAAAAACGGGGACGTTTTCCAGATTATAGTAACAGGAAGGTTGTATGTGCATTCTGTATGAGGCGGTTCTGGTCCGCAGAGGATCTCCGGCGCCATATGAGAACACACACCGGAGAACGACCTTTCTCCTGCGATATATGCTGCAGAAGATTCACCTTGAAACATAGTATGCTGCGGCACAGAAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAACTCACCTGCACAGCCACCTACGATCACACCACGAAGTCAACAGCAACAACAAATTCTGGTGACAGCCAACAACGGAAATTCCCGTATTCAAGACAGAATCTCTTTACCAACTGTTACTCCAGTCGCGACCGGTGACGCAGCCCCGAGTGGATTAATAAGATTCAATCCATACGAGAAATTAACCACTCTGACAGGAAAATTGGCCAGTATTCCATCAAACGCTAATCCAGATGCAGAGAGCACGGATAATGATTTGATCTCGAATCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCCGCCAAGCTATTAGGAGTAAAGCGTAGTCATGAGTGA
Protein Sequence: MDDVRRFTVKNGPTQENENEAPADAASSPSSVELPESAHPCPACSTVLPTSRELTNHLRGHNSPRSTDCSGEDDYCCGVCNKVLSSASSLDRHVHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDRRDEEQTSSLTGKRKCPNYASDSETQKRHKILLNSSRSEMKSRPDDNQNIYNCPVCGRQDFATSALLEAHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSMGNTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQSFRSDTSTPENNIKFNTSVNSSGSSSTYCAEYHEEEAQDAFSAEFRKMKLKGEFPCRLCTSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEVRKSLVYPPEREDLHHQAQIHYPPVSMEVRGEIRIIEEAKLQNSSMSLYGTSHFEKNDAFSRHGQPLELTQRNSEETKPGQDAKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNISENIGEDGPLDLSMDVLDLSKKSKEKEDDNFAAAHEQFGKNQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFSTFPGSVGAGILPPYMFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFTTFSQNRDMNSQSHSTTDQSEYAKLISSKMANKSLTTRDKADSLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGSQSYNNILPKVEQSTNPEFTRHSISDQVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKENQESQDQREKSLLRGQLEATESMKETVVKEEAMECSNDGPNETNVELEKNEQTVTEQQKKSDTEKATVTENSVDKNPDRVLKTESVNMNSEKMEDGATDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSDTPSSEPQTSPQECPKPNNEQTDYDSQSSSVSEGIETSSMPGLTKSNSNASQLANETARSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQQILVTANNGNSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00214579;
80% Identity: -