Basic Information

Insect: Bombus sonorus
Gene Symbol: Rreb1
Assembly: GCA_029958995.1
Location: JARWAU010000006.1:5735048-5742824[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0038 0.42 11.7 0.1 1 23 41 63 41 63 0.96

2 16 0.00033 0.036 15.1 0.4 1 23 77 99 77 99 0.97

3 16 8e-07 8.8e-05 23.3 1.2 1 23 105 128 105 128 0.98

4 16 0.014 1.6 9.9 0.1 1 23 223 247 223 247 0.95

5 16 0.072 7.9 7.7 3.0 2 23 253 275 253 275 0.95

6 16 1.9 2.1e+02 3.3 0.6 1 19 331 349 331 351 0.89

7 16 0.53 59 5.0 0.1 1 23 464 486 464 486 0.96

8 16 2.8e-05 0.0031 18.4 0.3 1 23 495 517 495 517 0.98

9 16 0.0012 0.14 13.3 2.8 1 23 523 546 523 546 0.97

10 16 0.00046 0.05 14.6 3.0 1 23 928 951 928 951 0.97

11 16 0.00066 0.073 14.1 0.1 3 23 1228 1248 1226 1248 0.97

12 16 0.59 65 4.8 6.0 1 23 1254 1277 1254 1277 0.97

13 16 0.0041 0.46 11.6 2.2 1 23 1315 1339 1315 1339 0.97

14 16 6.4 7.1e+02 1.6 7.4 1 23 1423 1446 1423 1446 0.96

15 16 0.011 1.2 10.3 0.4 2 23 1497 1518 1496 1518 0.94

16 16 1.3 1.5e+02 3.7 8.2 1 23 1524 1546 1524 1546 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0038	0.42	11.7	0.1	1	23	41	63	41	63	0.96
2	16	0.00033	0.036	15.1	0.4	1	23	77	99	77	99	0.97
3	16	8e-07	8.8e-05	23.3	1.2	1	23	105	128	105	128	0.98
4	16	0.014	1.6	9.9	0.1	1	23	223	247	223	247	0.95
5	16	0.072	7.9	7.7	3.0	2	23	253	275	253	275	0.95
6	16	1.9	2.1e+02	3.3	0.6	1	19	331	349	331	351	0.89
7	16	0.53	59	5.0	0.1	1	23	464	486	464	486	0.96
8	16	2.8e-05	0.0031	18.4	0.3	1	23	495	517	495	517	0.98
9	16	0.0012	0.14	13.3	2.8	1	23	523	546	523	546	0.97
10	16	0.00046	0.05	14.6	3.0	1	23	928	951	928	951	0.97
11	16	0.00066	0.073	14.1	0.1	3	23	1228	1248	1226	1248	0.97
12	16	0.59	65	4.8	6.0	1	23	1254	1277	1254	1277	0.97
13	16	0.0041	0.46	11.6	2.2	1	23	1315	1339	1315	1339	0.97
14	16	6.4	7.1e+02	1.6	7.4	1	23	1423	1446	1423	1446	0.96
15	16	0.011	1.2	10.3	0.4	2	23	1497	1518	1496	1518	0.94
16	16	1.3	1.5e+02	3.7	8.2	1	23	1524	1546	1524	1546	0.98

Sequence Information

Coding Sequence: ATGATCGCGGTAAAATTACATTTAGTTACTGTTAAGAACGGAGCCACCCAGGAAAATGAGAACGAAACAACAGCTGATGCTGCATCCTCACCATCTAGTGTTGAACTACCAGAAAGCGCACACCCATGTCCAGCTTGTCCGACTGTTTTGCCCACCTCCAGGGAGTTAACGAACCACCTACGCGGCCATAATTCGCCTCGCAGCACAGACTGTAGCGGCGAAGATGACTATTGCTGCGGCGTGTGCAATAAGGTGCTGAGCTCTGCAAGTTCCCTCGACAGACATGTGTTGGTACACTCCGGGGAACGGCCGTTCAAATGCAAGTATTGTGAGATGGCGTTCACCACGAACGGCAATATGAACAGGCATTTGAGGACAGCGCACAGAGGCGCCTCGCCTAACAGCTGCACCGACTCCGAGGGTAGCAGCGACTCGGACAAATCATCTAGGCAGCGACATCTCGAGGAATACAACAACAACGAGATCACAAAAAGAAACTCGCCAAATATCGGAGACAGACGGAACGAGGAACAGACCTCGTCGGTAACTGGAAAGAGGAAGTGCCCTAACTATGCGAGCGACAGCGAAACACAGAAGAGGCACAAGATTCTTCTAAATAGCTCGAGAAGCGAGATGAAATCGAGGCCGGACGACAACCAGAACATTTACAATTGTCCAGTATGCGGGCGACAGGATTTTGCCACTAGCGCCCTCTTAGAAACGCATCTGGAACGAAGTCATCCGGAATTCCCCGCGAAATGCGACACGTGCAACTTGTCGTTCAAAAACCACAGAGTACTGAACCTGCATCGGTTCATGATACATTTCGCGGAACACTCGATGGGAAATACCGCGAGAAACCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTCTCGTCCGATAAGTTCCCAGCAATAGCTAGAGCTGTCTGCGAACAGTCGCTTCACCGACCAGCTTCTGGCGAGGTAGCAAAATTCCAATGCTCCAAATGTCTGCGAGCATTCCCTTGTAGATCCGCGTTGGACGCCCACGAAACTGACTGCGGCACGATGAACTTGCAAAGCAGAACAACCGACGATAGCCAATCGAGAAGAGACGATTTCTTCGCTGGCTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAAGAAGGCAAAGATCTTGCCGATATCCAGAGTATCATATCCGTCACCTCTGGACCTATCTTACAGAGTTTCCGATCAGACACCAGTACACCAGAGAATAACATCAAATTTAATACCAATGTAAATTCTTCTGGTAGTTCAAGTACGTATTGCGCGGAGTACCACGAGGAGGAAGCTCAAGACGCGTTTTCTGCGGAGttcagaaaaatgaaattaaaagggGAGTTCCCTTGTAGGCTCTGTTCATCAATATTCCCTAATCTAAGAGCCTTAAAAGGTCACAATAGGGCGCACATGGGCGTGGGACCTGGCATGCCATATCCTTGTAATATGTGCCCTTATACCAGCACTGATAAAGCGACTCTGGTGAGGCATCTGAGGTCTCACAATGGCGACAGACCTTACGAATGCTCTCTCTGCAATTACGCTTTCACAACTAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGAGAAGACATTAAGAGCGTTCTCATTTACCATCCAAATGAAGATTCTACGAACGAGAACGTGGAACGTGGAAACTCGCCCAGAGTTTTGAAAGATGAAGTGAGGAAGAGCCTGGTATATCCGCCAGAACGCGACGATCTTCACCACCAGGCGCAAATACATTATCCTCCGGCTTCTATGGAGGTAAGAGGTGAGATCAGAATAATAGAAGAGGCGAAGTTGCAAAATTCCTCGATGTCGATATACAGCACTAGCCACTTCGAAAAAAATGACGCGTTTTCAAGGCATGGTCAGCCTTTGGAGCTGACTCAGAGGAACTCCGAGGAGACAAAACCTGGTCAGGATGTCAAATCGGATTATTCGAAGTTGGACGACGATTTGGAATCGAGGTCGTCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTAAAGAAAGGTCTCAACATATCGGAAAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTAGATCTCAGCAAGAAGTCGAAGGAAAAGGAGAACGATAACTTCGCCGCGGCTCACGAACAATTTGGTAATAACCAAAAAGATTTGTACAGTGCTACCAGTCAGTTATTGTTGACCGAGGCTTTGTTGAAGGCTGGCCAGGGTAGCTCTCAACCTACATCTTTGGAAGCTCTGTACGCTAACGCAATCTACAGAAATTTCAGTACATTCCCTGGTAGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAACCCTCATGTCTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGTCTACAGTTGACAAGCGGAGGTACTTTGGTGGAGCCACCCATAGGCAGCGCGGGATTCACTGCCTTTTCTCAAAATAGAGACATGAATTCCCAGTCTCATTCAACAACCGACCAAAGTGAATATGCCAAATTAATATCTTCTAAGATGGCCAACAAGAGTCTGGCAAACCGCGATAAACCAGACAATCTACCCTCGTCCAATTCCGTAAAGATGGTAATCAAAAATGGAGTCCTGATGCCTAAACAAAAACAACGAAGGTACAGAACTGAGAGGCCTTTTACCTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAACAACACCCTCAGCACTGGAGCCAGCGACCCAGAGGGGGTCACTCGACAAGGGGAAGACCACCTTCCAGCCATCCTACGCTGATTCAAAACCTCGGACAGGCAACTTCTCAAGGCAGTCAATCGTACAACAACATCCTGCCAAAAGTGGAACAGTCAACGAATCCGGAATTTACGAGGCATTCCATCTCCGACCAAGTGAAGTACGCTATCCTGGCACAGCAATTAAAAGCAAACAAAATGGAAGACAATGACTCTGAAGAGGAACTGGTAATAGACGAAGGGCCCCAGGAAAAAGAAAACCAGGAATCTCAGGATCAAAGAGAGAAGAGTCTTTTGCGAGGGCAATTAGAAGCTGCAGAATCTACGAAAGAAACTGTAGTGAAAGAAGAAGCCATGGAATGTTCGAACGATGGCCCAAACGAGATAAATGTTGAGCTGGAGAAGAACGAACAAACTGTTACTGAACAACAGAAAAAATCTGACACGGAGAAGACTACTGTGACGGAAAATTCCGTTGATAAGAATCCTGACAGAGTGCTCAAAACGGATTCAGTTAATATGAACAGCGATAAGATGGAGGATGGAGCACCTGATCTCGCTAGCGTGTCGGAACTGTTGGATAATGCCTCCCAACAATACCAACAGTTTCAACCCCAATATTTAAGCGATGAAGAAGGTTTAGTAGCATCGAACAGTGATTGCAATAATTCCGGCAGTGATGAAAAATCCGACTCCGTAAATTCATCACATTCAACGAACGcatcaaagaaaaagaagaaaaagaagaaaaaaaagaagaaatcagcATATTCAATGGCCCCCAATAGAGTAATCTGTCCATACTGTGAAAGACCTTTTCCATGGACTTCATCTCTCAGACGGCATATTTTAACACACACTGGACAGAAACCTTACCAATGCGTTCACTGTTCGTTGTTATTCACAACGAAATCCAACTGTGACCGTCACTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTTAGAAACTCTTCTTCTCCGGATTCTCAAGCGGTCATTAACAATAGTAACTCGTTCTCCATGAGGAACGTTCCTGAAAGACCCTACAAGTGCAATCAGTGTCCCAGCTCAACATTTTCAACGTTGGGTAACCTAAAGAAACATCGTTCCACTAAACACGCTCGAAAGATGAAGACCAGGTCGGAGACTCCATCCAGTGAACCTCAAACCAGCCCACAGGAGTGTCCGAAGCCGAACAACGAACAAACTGATTATGATAGTCAGTCTTCGAGCGTGTCTGAAGGGATAGAAACTTCTTCGATGCCAGGACTTACCAAATCGAATTCCAGCGCTTCACAATTGGCCAACGAAACAGCTAGGTCAAGGAGACCTTCACCAAGATCATCACCAGGGCCCAGTGATGTTCCCTTCAAGTGCCACTTGTGCGATTGTGGTTTCGCAGAACGACACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATATTACTGGCAAAAGGGGCACTGGACATGGACATCGACGCGGTTGAAGACCAGCAACAACCGCCGCCACAACATCATACCAGCGACGGAGAAGAAAAACGGGGACGTTTCCCAGACTATAGTAACAGGAAGgTTGTATGTGCATTCTGTATGAGGCGGTTCTGGTCCGCAGAAGATCTTCGGCGCCATATGAGAACACACACCGGAGAACGACCTTTCTCGTGCGATATATGCTGCAGAAGATTCACCCTGAAACATAGTATGCTGCGGCACAGAAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAACTCACCTGCACAGCCACCTACGATCACGCCACGAAGTCAACATCAACAACAAATTCTGGTGGCAGCCAACAACGGAAATTCCCGTATTCAAGATAGAATCTCTTTACCAACTGTTACTCCAGTCGCGACCGGTGATGCAGCCCCGAGTGGATTAATAAGATTCAATCCGTACGAGAAATTAACCACTCTAACAGGAAAATTGGCCAGTATTCCATCAAACGCAAACCCAGATGCAGAAAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCCGCCAAGCTATTAGGAGTAAAGCGTAGTCATGAGTGA
Protein Sequence: MIAVKLHLVTVKNGATQENENETTADAASSPSSVELPESAHPCPACPTVLPTSRELTNHLRGHNSPRSTDCSGEDDYCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDRRNEEQTSSVTGKRKCPNYASDSETQKRHKILLNSSRSEMKSRPDDNQNIYNCPVCGRQDFATSALLETHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSMGNTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQSFRSDTSTPENNIKFNTNVNSSGSSSTYCAEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEVRKSLVYPPERDDLHHQAQIHYPPASMEVRGEIRIIEEAKLQNSSMSIYSTSHFEKNDAFSRHGQPLELTQRNSEETKPGQDVKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNISENIGEDGPLDLSMDVLDLSKKSKEKENDNFAAAHEQFGNNQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFSTFPGSVGAGILPPYMFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFTAFSQNRDMNSQSHSTTDQSEYAKLISSKMANKSLANRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGSQSYNNILPKVEQSTNPEFTRHSISDQVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKENQESQDQREKSLLRGQLEAAESTKETVVKEEAMECSNDGPNEINVELEKNEQTVTEQQKKSDTEKTTVTENSVDKNPDRVLKTDSVNMNSDKMEDGAPDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSETPSSEPQTSPQECPKPNNEQTDYDSQSSSVSEGIETSSMPGLTKSNSSASQLANETARSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEILLAKGALDMDIDAVEDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQHQQQILVAANNGNSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00214579;
80% Identity: -