Basic Information

Insect: Colletes collaris
Gene Symbol: RREB1
Assembly: GCA_030068185.1
Location: JASGYR010000259.1:3108317-3114113[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0059 0.71 11.2 0.1 1 23 38 60 38 60 0.96

2 15 0.00035 0.042 15.1 0.4 1 23 74 96 74 96 0.97

3 15 8.6e-07 0.0001 23.3 1.2 1 23 102 125 102 125 0.98

4 15 0.12 14 7.1 0.0 1 20 218 238 218 239 0.93

5 15 0.2 24 6.5 3.4 2 23 248 270 248 270 0.94

6 15 2 2.4e+02 3.3 0.6 1 19 326 344 326 346 0.89

7 15 0.21 25 6.4 0.1 1 23 460 482 460 482 0.96

8 15 0.0001 0.012 16.8 0.6 1 23 491 513 491 513 0.98

9 15 0.001 0.13 13.6 2.5 1 23 519 542 519 542 0.97

10 15 0.00049 0.059 14.6 3.0 1 23 917 940 917 940 0.97

11 15 0.00053 0.063 14.5 0.1 3 23 1217 1237 1215 1237 0.97

12 15 0.0044 0.53 11.6 2.2 1 23 1305 1329 1305 1329 0.97

13 15 3.3 3.9e+02 2.6 5.3 1 23 1412 1435 1412 1435 0.95

14 15 0.012 1.4 10.3 0.4 2 23 1488 1509 1487 1509 0.94

15 15 0.00029 0.035 15.4 4.6 1 23 1515 1537 1515 1537 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0059	0.71	11.2	0.1	1	23	38	60	38	60	0.96
2	15	0.00035	0.042	15.1	0.4	1	23	74	96	74	96	0.97
3	15	8.6e-07	0.0001	23.3	1.2	1	23	102	125	102	125	0.98
4	15	0.12	14	7.1	0.0	1	20	218	238	218	239	0.93
5	15	0.2	24	6.5	3.4	2	23	248	270	248	270	0.94
6	15	2	2.4e+02	3.3	0.6	1	19	326	344	326	346	0.89
7	15	0.21	25	6.4	0.1	1	23	460	482	460	482	0.96
8	15	0.0001	0.012	16.8	0.6	1	23	491	513	491	513	0.98
9	15	0.001	0.13	13.6	2.5	1	23	519	542	519	542	0.97
10	15	0.00049	0.059	14.6	3.0	1	23	917	940	917	940	0.97
11	15	0.00053	0.063	14.5	0.1	3	23	1217	1237	1215	1237	0.97
12	15	0.0044	0.53	11.6	2.2	1	23	1305	1329	1305	1329	0.97
13	15	3.3	3.9e+02	2.6	5.3	1	23	1412	1435	1412	1435	0.95
14	15	0.012	1.4	10.3	0.4	2	23	1488	1509	1487	1509	0.94
15	15	0.00029	0.035	15.4	4.6	1	23	1515	1537	1515	1537	0.98

Sequence Information

Coding Sequence: ATGTTTCTCTTTGTTTCAGTTACTGTTAAGAGTGATCCCGATCAGGGACACAACGAGACGCAAGCGGATGCTGCATCGCCACTATCGAGCGTGGAGTTACCAGAGAGCGCTCATCCGTGCCCCGCGTGCCCTACGGTGCTGCCCAGCTCGCGGGAGCTGACGAACCACCTGCGCGGGCACAATTCGCCGCGCAGCACCGACTGCAGCGGCGAGGACGATTACTGTTGCGGGGTATGCAACAAGGTGCTAAGCTCGGCGAGCTCGTTGGACAGGCACGTGCTGGTGCACTCCGGTGAGCGTCCGTTCAAGTGCAAGTACTGCGAGATGGCGTTCACGACGAACGGGAACATGAACAGGCACCTGAGGACCGCGCACTGCGCCGCGTCGCCGCATAGTTGCACGGACTCCGAGGGCAGCAGCGACTCCGAGAAACCATCGAAGCAGAGACACATCGAGGAGTACAACAACAACGAGATTGCGAAGAGGAACTCGCCGGACTTCATCGACAGGCAAGAAAAGTCGCCGAGCCTGACGGGCAAACGGAAGTGCACGGACTATCTGAGCGACAACGAGGGTCAGAAGAGGCACAAGATACTGTTGAACAACTCGAGGACGGAGATGAAATCGCGTCCGGACGACAGTCAGAACGTGTACAATTGCCCGGTGTGCGGTAGACAGGACTTTGCCACCAGCGCCCTCCTCGAAGCTCATTTGGAATGCAATCATCCGGAGTTCCCCGCAAAATGCGACGCCTGCAACCGGTCGTTCAAGAACCATCGGGTGCTGAACCTGCACCGTTTCATGAACCACTTCGCGGAGCACTCGATAGGGAGCACCGCGAGGAACCTGAGGAACTCCGTGGTGGGATTCAACGATCTGACCTTCGTGGATTTCTCGTCGGACAAGTTCCCGACGATCGCCAGGGCGGTTTGCGAGCAGTCCTTGCACCGACCAGCTTCTGGTGAGGTAGCAAAGTTCCAGTGCTCCAAGTGTCTGAGAGCATTTCCGTGCAGATCAGCCCTGGACGCCCACGAGACCGACTGCGGGACCGCGAACCCGCAGTCGAGACCGATCAGCGACAACCAGTCCAGGAGGGACGACTTCTTCGCAGGACTGGACCTCCAGAACAAGGCCGCCCTCACCGAGGCCAAAGAGGGCAAAGACCTGGCCGACATCCAGAGCATCATATCGGTCACGTCCGGTCCTATACTGCAAAACTTTCCACGATCCGACGCCAGCACGCCGGAGAACAATATGAAATTCAACCCCAGTGTCGGCTCGTCCGGCTCCTCGGGCACGTTCTCGTCGGAGTACCATGAGGAGGAGGCACAGGACGCGTTCGCCGCCGAGTTCaggaagatgaagatgaagGGCGAGTTCCCGTGCAGGCTCTGCACCGCGATATTCCCGAACCTGAGGGCGCTGAAGGGCCACAACCGAGCGCACATGGGCGTGGGCCCCGGGATGCCGTATCCCTGCAACATGTGCTCGTACACCAGCACCGACAAGGCTACCCTGGTGAAGCATCTGAGGTCGCACAACGGCGACAGGCCGTACGAATGCTCGTTGTGCAACTACGCGTTCACCACCAAGGCGAACTGCGAGCGCCACGTTCGAAACAGCCACGGTAAACTGACGAGGGAGGACATAAAGAGCGTGCTGATATACCATCCGAACGAGAACTCGACGAACGAGAGCGTCGAGAGGAGCTCGCCCAGAGTGATCAAGGACGACGTGCGTAAGAGCTTGGTGTACCCGAGCGACCGTGACGAGCTGCAGCATCAAACGCAGCTGCACTATCCGTCGGTGCCTATGGAGAGCCGTGGCGAGATCAGGATAATAGAGGAGGCGAAGCTGCACAACGCGAACTATTACGAAAAGACGGAGGCGTTCCCGAGGCCCGCGCAACCGATCGAGCTGACGCAACGGAACCCGGCCGACCGGAAGCCGACGCAGGACGGCAAAACGGACTACACGAAGCTCGACGAGGATCTCGAGTCAAGGTCATCGGAAGGCAGCGTGTCTCTAGTCAGTGATACCAAATCAGATTCGCACCAAAGAATACAAGCTAGTCCGATGAACTTGAAGAAGGGTCTGAACGCGTCGGAGAACGTCGGCGAGGACGGGCCGTTGGACCTGTCGATGGACGTACTGGATCTCAGCAAGAAGTCGAAGGACAAGGAGGACAACGAGTTCGTCGCGTCGCACGAGCACTACGGAAAGAACCAGAAGGAACTGTACAACGCCACCAGCCAGCTGTTGCTCACCGAGGCGCTCCTGAAGGCTGGACAGGGCACCTCACAGCCGCCATCTTTGGAGGCGCTGTACGCGAACGCGCACCTCATCTACAGAAACTTCGGAACATTCCCCGGCGGCGTGGGCGCCAGTATTCTGCCGCCGTACCTGTTCAATCCTCACGTGTTCGGGCAGGACTTCTCGATGAAGGAGAGGCTGCAGAAGGAGCTGGTCAGAGGCCTGCAGTTAACCAGCGGCGGCACTCTGGTGGAACCGCCGTCCATCGGTGGTACCGGATTCCCGGCTTTCCCGCCCAGCAGAGACATGAACGCTCAGGCCACCGAGCAGAACGACTATGCGAAGCTGATCTCCGCCAAGATAGCCAGCAAAGCGTTGTCCAGCCGCGAGAAGCCCGACAACCACATACCGTCCGCGAACTCCGTGAAAATGGTGATCAAGAACGGCGTGCTGATGCCCAAGCAGAAACAACGACGATACAGGACGGAGAGGCCGTTCACCTGCGAGCACTGCTCGGCCAGATTCACCCTGAGGAGCAACATGGAGCGACACATCAAGCAACAACATCCTCAGTACTGGAGCCAGAGACCCAGGGGCGGTCACTCGACCAGAGGCAGGCCACCCTCCAACAACCCGACATTGCTGCAGAATCTCGCGACAACTCAAGCCACGCAACCGTACCCAAACATCCTACCGAAAGCGGAGCAACCGGCGAGCTCCGAGTACGCGAAGCATCCAATCTCGGACCAGGTGAAGTACGCCATCCTGGCGCAGCAGTTGAAGGCCAACAAGGTCGAGGAGGACTCCGAGGAGGAGCTGGTGATCGACGAGGACCCGCAGGAGAAGGACGCCCAGGAATCTCAGGAGCAGAAGAAGTGCACGAGCCTGCTGAGAGGACAGCTGGAGGCAGAGTCCACGAAGGAGATGGCCACCGTGAAGGAGGAGGTCGAGGAGCCCTCGAAAGCTGACTCGGAATCGTCCAACACCGAGTCCGCTCACAGTGACAACGCCGACGAGGCAAAGACCTCCGACACGGAGAAAGCAGCGGAACCAGAGGACGCGATGAGCGACAATGCGGGCGATCGCGTGTTCAAGTCGGACCCGGACGAGGAGAAGCAAGAGAAGATGGAGGACGGGACGACGGACCTGGCGAGCGTCTCCGAGCTCCTGGACAACGCGTCGCAACAGTACCAGCAGTTCCAGCCGCAATACCTGAGCGACGAGGAGGGCCTGGTCGCGTCGAACAGCGACTGCAACAACTCCGGCAGCGACGAGAAGTCCGACTCGGTGAACTCGCTGAACTCCGTCGCCACCGCCTcgtcgaagaagaagaagaaaaagaagaagaagaagaagaagaagtccGCGTACTCGATGGCGCCGAACCGCGTGATCTGCCCGTACTGTCAGCGACCGTTCCCGTGGACGTCCTCCTTGAGGCGACACATTCTGACGCACACGGGACAGAAGCCTTACCAGTGCATCCATTGCTCGCTCCTGTTCACCACGAAATCGAACTGCGATCGCCATCTGCTCAGGAAGCATCACAAGGCGAACCCGAACAAGATCCGCAGGTCCAGGAACTCGTCGTCGCCGGAAAGCCAGGCAGTGATCGGCAACAACAACTCTTTCTCCATGAGAAACGTGCCCGAGAGGCCGTACAAGTGCAACCAGTGCCCCAGCTCCACGTTCTCCACCCTGGGGAACCTGAAGAAACACCGTTCGACCAAGCACGCGCGCAAGGCGAAGTGTAGGTCCGACACGCCGTCCAGCGAACCGCAGAACAGCCCGCAGGAATGCACCAAGCAGAACGAGCAGACCGACTACGACAGCCAATCGTCGAGCGTGTCCGAGAGCATGGAGACCTCGTCCGTACCGGAGCTGCCCAAGACGACCGTGAACACCTCGCCGTCCACCAACGACACGCCCAGGTCCAGGAGACCGTCACCGAGATCGTCGCCGGGTCCCAGCGACGTCCCTTTCAAGTGTCACCTGTGCGACTGCGGTTTCGCCGAGAGGCAGGACTGTCTGGAGCACATCAAGATGAATCACAAACGATCGTACGAGATGCTGGTGGCGAAGGGCGCCCTGGACATGGACATCGACACGGCCGAGGACCAGCAGCAACAGCATCAGCCGCCACCCCATCATCCCAGCGACGGCGAAGAGAAACGGGGACGTTTCCCGGACTATAGTAACAGAaagGTGGTATGCGCGTTCTGCATGAGGCGGTTCTGGTCCGCGGAGGATCTGCGTCGACACATGAGGACGCACACGGGCGAACGACCGTTCTCCTGCGACATCTGCGGCCGTAGGTTCACCCTGAAGCACAGCATGCTGCGACACCGAAAGAAGCACGAGTCCATCGACTCGTCGATGTACGTGGGCACCAGCGGCGACGAGGAGAACTCGCCCACGCAGCCGCCGCCTATCACGCCACGGAGCCAACAACAGCCGCCGATCCTGGTGGCGGCGAACTCCGGGAATCCCAGGATCCAGGACAGAATCTCGTTGCCCACGGTCGCGCCTGTAGCCACTGGCGACGCGGCGCCCAGCGGACTGATGAGATTCAATCCGTACGAGAAGCTGACTACCCTGACAGGGAAGCTGGCAGGCATCCCGCAGAACGCGAACCCCGACGCCAGCGAGAGCGCGGACGATTTGATCTCTAACCTCCTAGGAATAAGGGACAAGAACTTCATCGACCGGGTGCTCCAAGCGTCGGCCGACGACGCTGCCAAATTGCTGGGAGTGAAACGCAGCCACGAATGA
Protein Sequence: MFLFVSVTVKSDPDQGHNETQADAASPLSSVELPESAHPCPACPTVLPSSRELTNHLRGHNSPRSTDCSGEDDYCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHCAASPHSCTDSEGSSDSEKPSKQRHIEEYNNNEIAKRNSPDFIDRQEKSPSLTGKRKCTDYLSDNEGQKRHKILLNNSRTEMKSRPDDSQNVYNCPVCGRQDFATSALLEAHLECNHPEFPAKCDACNRSFKNHRVLNLHRFMNHFAEHSIGSTARNLRNSVVGFNDLTFVDFSSDKFPTIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTANPQSRPISDNQSRRDDFFAGLDLQNKAALTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPENNMKFNPSVGSSGSSGTFSSEYHEEEAQDAFAAEFRKMKMKGEFPCRLCTAIFPNLRALKGHNRAHMGVGPGMPYPCNMCSYTSTDKATLVKHLRSHNGDRPYECSLCNYAFTTKANCERHVRNSHGKLTREDIKSVLIYHPNENSTNESVERSSPRVIKDDVRKSLVYPSDRDELQHQTQLHYPSVPMESRGEIRIIEEAKLHNANYYEKTEAFPRPAQPIELTQRNPADRKPTQDGKTDYTKLDEDLESRSSEGSVSLVSDTKSDSHQRIQASPMNLKKGLNASENVGEDGPLDLSMDVLDLSKKSKDKEDNEFVASHEHYGKNQKELYNATSQLLLTEALLKAGQGTSQPPSLEALYANAHLIYRNFGTFPGGVGASILPPYLFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPSIGGTGFPAFPPSRDMNAQATEQNDYAKLISAKIASKALSSREKPDNHIPSANSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQYWSQRPRGGHSTRGRPPSNNPTLLQNLATTQATQPYPNILPKAEQPASSEYAKHPISDQVKYAILAQQLKANKVEEDSEEELVIDEDPQEKDAQESQEQKKCTSLLRGQLEAESTKEMATVKEEVEEPSKADSESSNTESAHSDNADEAKTSDTEKAAEPEDAMSDNAGDRVFKSDPDEEKQEKMEDGTTDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSLNSVATASSKKKKKKKKKKKKKSAYSMAPNRVICPYCQRPFPWTSSLRRHILTHTGQKPYQCIHCSLLFTTKSNCDRHLLRKHHKANPNKIRRSRNSSSPESQAVIGNNNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKAKCRSDTPSSEPQNSPQECTKQNEQTDYDSQSSSVSESMETSSVPELPKTTVNTSPSTNDTPRSRRPSPRSSPGPSDVPFKCHLCDCGFAERQDCLEHIKMNHKRSYEMLVAKGALDMDIDTAEDQQQQHQPPPHHPSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICGRRFTLKHSMLRHRKKHESIDSSMYVGTSGDEENSPTQPPPITPRSQQQPPILVAANSGNPRIQDRISLPTVAPVATGDAAPSGLMRFNPYEKLTTLTGKLAGIPQNANPDASESADDLISNLLGIRDKNFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00361116;
80% Identity: -