Basic Information

Insect: Nomada goodeniana
Gene Symbol: RREB1
Assembly: GCA_963969485.1
Location: OZ018304.1:16898324-16908600[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0059 0.43 11.0 0.1 1 23 40 62 40 62 0.96

2 16 0.00025 0.018 15.4 0.0 1 23 76 98 76 98 0.97

3 16 1.2e-07 8.5e-06 25.8 1.1 1 23 104 127 104 127 0.98

4 16 0.012 0.87 10.1 0.1 1 23 221 245 221 245 0.95

5 16 0.15 11 6.7 2.9 2 23 251 273 250 273 0.94

6 16 1.8 1.3e+02 3.3 0.6 1 19 329 347 329 349 0.89

7 16 0.19 14 6.3 0.1 1 23 462 484 462 484 0.96

8 16 2.6e-05 0.0019 18.5 0.3 1 23 493 515 493 515 0.98

9 16 0.0012 0.085 13.3 2.8 1 23 521 544 521 544 0.97

10 16 0.00043 0.031 14.6 3.0 1 23 924 947 924 947 0.97

11 16 0.00062 0.045 14.1 0.1 3 23 1222 1242 1220 1242 0.97

12 16 0.55 40 4.9 6.0 1 23 1248 1271 1248 1271 0.97

13 16 0.0039 0.28 11.6 2.2 1 23 1307 1331 1307 1331 0.97

14 16 0.44 32 5.2 4.8 1 23 1415 1438 1415 1438 0.96

15 16 0.01 0.76 10.3 0.4 2 23 1487 1508 1486 1508 0.94

16 16 1.2 90 3.7 8.2 1 23 1514 1536 1514 1536 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0059	0.43	11.0	0.1	1	23	40	62	40	62	0.96
2	16	0.00025	0.018	15.4	0.0	1	23	76	98	76	98	0.97
3	16	1.2e-07	8.5e-06	25.8	1.1	1	23	104	127	104	127	0.98
4	16	0.012	0.87	10.1	0.1	1	23	221	245	221	245	0.95
5	16	0.15	11	6.7	2.9	2	23	251	273	250	273	0.94
6	16	1.8	1.3e+02	3.3	0.6	1	19	329	347	329	349	0.89
7	16	0.19	14	6.3	0.1	1	23	462	484	462	484	0.96
8	16	2.6e-05	0.0019	18.5	0.3	1	23	493	515	493	515	0.98
9	16	0.0012	0.085	13.3	2.8	1	23	521	544	521	544	0.97
10	16	0.00043	0.031	14.6	3.0	1	23	924	947	924	947	0.97
11	16	0.00062	0.045	14.1	0.1	3	23	1222	1242	1220	1242	0.97
12	16	0.55	40	4.9	6.0	1	23	1248	1271	1248	1271	0.97
13	16	0.0039	0.28	11.6	2.2	1	23	1307	1331	1307	1331	0.97
14	16	0.44	32	5.2	4.8	1	23	1415	1438	1415	1438	0.96
15	16	0.01	0.76	10.3	0.4	2	23	1487	1508	1486	1508	0.94
16	16	1.2	90	3.7	8.2	1	23	1514	1536	1514	1536	0.98

Sequence Information

Coding Sequence: ATGAAGAACCGTGCCGAAGGGATTGTTACTGTCAAGAACAGCCAAGAACAGGAGAACGAATCGCAAGCCGATGCTGATTCCTCGCCATCCAGTATCGAAGTCGTCCCGGAATGTGCACACCCCTGCCCCGCCTGCCCAATCGTCCTAAACAGCTCCAGAGAATTAACAAACCACCTACGCGGCCATAATTCGCCCCGCAGCaccgattgcagcggcgaggACGATTACATCTGCGGCGTGTGCAACAAGGTGCTCAGCTCGGCCAGTTCTCTAGACAGGCACGTTTTAGTGCACTCCGGGGAACGTCCGTTCAAGTGCAAATACTGCGACATGGCGTTCACGACGAACGGGAACATGAACAGGCACATCAGAACGGCCCACAGAAGCGCGTCGCCGCACAGCTGCACGGACTCCGAAGGGAGCAGCGACTCCGAGAAACAATCCCAGAGGCGGCATTTAGAGGAGTACAATAACAACGAAATCACGAAAAGGAACTCCCCGGACTTCATCGAGAGGCAGGACGAGCATATGCCCAGCCCGTCCGGCAAGAGAAAGTGTCCGGATTACTCCAGCGACAACGAAAATCAGAAGAGGCACAAGATCTTGCTGAGCAACTCGAGGACGGAGATCAAGTCGCAGCCGGAGGACAGCCAGGACGTCTATATATGCCCGGTCTGCGGCAGGCAAGATTTTGCCACCAGCGCCCTCCTGGAGGCACACTTGGAGCGCTGCCATCCGGAGTTCCCCACGAAATGCGACTCCTGCAACCTGTCGTTCAAAAACCACAGGGTCCTGAATCTGCATCGATTCATGATACACTTCGCTGAACATTCCATAGGAAGTCCGGCGAGAAATCTTCGGAATTCCATAGTGGGCTTCAACGATCTGACCTTCGTCGACTTCTCCTCGGACAAGTTCCCGGCGATCGCCAGGGCGGTCTGCGAGCAATCCCTGCACAGACCGGCCTCCGGCGAGGTCGCGAAGTTTCAATGCTCGAAATGTCTCCGGGCATTCCCCTGTAGATCAGCGTTGGACGCCCACGAAACCGACTGCGGTATGACGAACTCGCAGAGCAGAATCGCGGACGACAGTCAGTCCAGGAGGGACGACTTTTTCGCCAGGCTGGATCTCCAGAATAAAGCCGCCCTGACGGAAGCCAAAGAGGGGAAAGATCTGGCTGATATACAGAGTATCATATCAGTCACGTCTGGACCTATCCTACAAAATTTCCCCCGTTCCGACTCCAGTACACCTGAGAGCAACAAGTTTAATCCCAGTGCCAGTTCCTCCAGCTCCTCGGGCACATTCTCCACGGAGTACCACGAGGAAGAAGCCCAGGACGCGTTCGCGGCGGAGTTCAGAAAGATGAAGTTGAAAGGCGAATTCCCTTGCAGGCTCTGCTCGGCGATATTCCCCAATTTGAGGGCACTGAAGGGCCACAATAGGGCGCACATGGGCGTCGGTCCTGGTATGCCGTATCCTTGCAACATGTGCCCGTACACGAGCTCGGACAAAGCCACCCTGGTCAGGCATCTGAGGTCACACAACGGCGACAGGCCGTACGAGTGCTCCCTCTGTAATTACGCGTTCACGACCAAAGCCAATTGCGAGAGGCACGTGAGAAACAGGCATGGGAAATTAACGAGGGAGGACATCAAGAGCGTCCTGATCTACCATCCGAACGAGGATTCCACGAACGAGAGCGTGGAGAGGACGTCCCCCAGAGTATCGAAGGACGATGTCAGGAAGAGCCTCATATTCGCGCAGGAACGTGACGATCTCCAGCATCAGGCGCAGATACATTACACCTCTCCGGCGCACATGGACGGCCGCGGCGAGATCAGGATAATAGACGATGCCAAATTGAACAACACGGTACTGTCCATGCAGAACATGAACCATTTCGAGAAGATCAACGTGTTCTCGATGCCGAGCCAGTCGCTGGAGGCACCGCAACGAAGCGTGGACGAGAGGCCGGACACCAGGTCGGACTGCTCGAAGCCTGACGACGACGCGGAGTCCAGGTCGTCAGAAGCGAGTATATCTCTAGTCAACGATATCAACACAGATTCGCACCAAAGAATACAAGCTAGTCCGATGAATCTGAAGAAGAGGTCGAGTTTGTCTGACACCGCTGGCGAGGACGGGCCCCTGGATCTGTCCATGGACGTGCTAGATCTCAGCAAGAAGTCCAAGGAGAGGGACGACGATCTTGGCGTGTCCGGATTGCATGAAAATGAGTTCGCGAGGAACCAGGAGCAGCTGTACAACGCGACCAGTCAGCTGTTATTAACGGAGGCGATACTAAAGGCCAGACACGGTAAGTCTCATACTACTTATTTGCTAAGTTTTATATATAGAGGCGCCATTTACGAGAACCATCGTATATTGTCTACAGGTATTGGAGCTGGACTTTTGCCACCGTACATGTTCAACCCTCACGTATTCGGCCAGGACTACACTACGAAGGAAAGGTTGCAGAGAGAATTGGTCAGAGGTCTGCAATTGACCAGCGGAGGGACATTGGTGGAGCCATCCATTGTCAACACTGGATTCCCAGCCTTCTGCCAAGGCAGAGACTTCAATTCACAAGCTGTCGGCGAGCAGAGCGAATACGCGAAGCTGATCTCCTCTAAAATGGCAAATCAGGGTCACTCGAGTAGAGACAAGCCTGATAATCTGCCGTCTTCGAACTCCGTGAAGATGGTGATTAAAAATGGTGTTCTGATGCCCAAGCAGAAGCAAAGACGATACAGGACCGAGAGGCCCTTCACCTGCGAGCATTGCTCTGCAAGGTTCACGTTGAGAAGCAACATGGAAAGGCATATTAAACAGCAGCACCCGCAACACTGGAGCCAGCGGCCCAGAGGAGGTCATTCGACTAGAGGAAGACCACCGTCCAGTCATCCGACACTGCTGCAAAACCTTGGACAGTCTACGTCGCAGGTAAACCAGAACTATTCAAATATCCTGCCAAAGGTCGATCAATCGCCAGCGAACTCGGACTTGGCTAAGCATCCCATTTCGGACCAAGTCAAATACGCGATTTTGGCTCAGCAGTTGAAGGCGAATAAAACGGAAGACAACGATTCAGAGGAAGAACTGGTTATCGACGAGGATCCCCAAGAGAAAGATCACCAGGAATCTCAAGAGCAGGAGAAGAGTCTGCTTAGAGGGCAACTGGAAGGCACTGAAACGGGAAAGGAAGTCACCGTAAAAGAGGAGGTAATGGAACCCATGAACTGTGACTCGCAGGAAGATGCTGTTGAATCGTCGAACAATGAGGAAGGTGAAGACGAAGGGCCAAAGACTTCTGACACAGAGAAGCCCGCAGAAACGGAGAAGTCTGACGCGAGCTCTAATCCAGTTCTGAAGACAGAGGCTCTTGAAGTGAAAGATGAGAAGGTAGAGGACGGGACGACAGATTTAGCAAGTGTGTCAGAATTGCTGGACAATGCCTCGCAGCAGTATCAACAATTTCAACCGCAATATCTGAGCGACGAGGAAGGTTTGGTCGCCTCTAACAGCGACTGCAATAATTCTGGCAGCGACGAGAAATCTGATTCGGTCAACTCGCTAAACTCGGTAAACGCCtcgtcgaaaaaaaagaagaaaaagaagaagaagaagagtgCGTATTCGATGGCGCCTAATCGTGTGATCTGTCCGTACTGCGAGCGGCCGTTCCCCTGGACGTCTTCGCTCAGAAGACACATCCTCACGCATACCGGACAGAAACCTTATCAGTGTGTCCACTGTTCGCTGTTATTCACTACCAAATCGAATTGCGACAGACACCTGTTAAGGAAACACAAAGCCAACCCGAACAAGATGCGCAGAGTTAGAAATTCTTCTTCTCCGGATTCTCAAGCAGTCATCAACAATTCGTTCTCCATGAGAAATGTACCCGAGAGGCCGTACAAATGTAACCAGTGCCCAAGTTCGACCTTCTCTACGCTGGGCAATCTGAAAAAGCATCGTTCCACTAAACATGCCCGGAAAGTTACATCGAGGCCAGACAGCCCATCCAGCGAACCTCAGAACAGCCCCCAGGAATGTTCTAAACAGAATAACGAACAGAGCGATTACGACAGCCAATCCTCCAGTGTCTCCGAAGGGACAGAAGTGTCCTCGATGGTAGAAATTGCTAAGACCCCAAATAATACCTCGTCGTCCACCAATGATACACCTAGATCAAGGAGACCATCTCCTAGATCTTCCCCTGGGCCCAGCGATGTGCCTTTCAAGTGTCACCTGTGCGACTGCGGCTTCGCGGACAGACAGGACTGCCTGGAACACATCAAAGTTAATCACAAGAGATCCTACGAAATGTTAGTTGCAAAGGGAGCCTTAGACATGGACATTGACGCCGTGGAGGACCAACAACCACCGCCGCAACAGACCAGCGATGGAGAAGAGAAGAGGGGACGGTTTCCGGATTACAGCAACAGAAAGGTGGTCTGCGCATTCTGTATGAGGCGATTCTGGTCCGCGGAGGATCTCCGACGTCACATGAGGACCCATACCGGGGAGAGGCCGTTCTCGTGCGACATTTGCTGCCGGAGGTTCACTCTGAAGCACAGTATGTTGCGGCACAGAAAGAAGCACGAGTCGATCGACTCCACGATGTACGTTGGCACCAGTGGAGACGAGGAAAATTCTCCCACACAGCCGTCCAGCATCGCTCTACGTAGCCAGCAACAAACGCCTGTCCACGCGACCAACAACAACGGAAACTCCCGACTTCAAGACAGAATCTCTTTACCGACTGTCGCTCCAGTCGTAACCAGTGATGCAGTGTCTAGTGGATTAATACGATTTAATCCGTACGAAAAATTAACCACTTTGTCAGGGAAACTGGCTAGTATTCCACAAAATGTGAATTCAGAAACGAACGAGAGCGCAGATAACGATTTGATTTCTAACCTCCTAGGAATTAGAGATAAGAACTTTATTGACCGCGTACTACAGGCGTCCGCTGATGATGCTGCCAAACTATTGGGGGTGAAGCACAGCCATGAATGA
Protein Sequence: MKNRAEGIVTVKNSQEQENESQADADSSPSSIEVVPECAHPCPACPIVLNSSRELTNHLRGHNSPRSTDCSGEDDYICGVCNKVLSSASSLDRHVLVHSGERPFKCKYCDMAFTTNGNMNRHIRTAHRSASPHSCTDSEGSSDSEKQSQRRHLEEYNNNEITKRNSPDFIERQDEHMPSPSGKRKCPDYSSDNENQKRHKILLSNSRTEIKSQPEDSQDVYICPVCGRQDFATSALLEAHLERCHPEFPTKCDSCNLSFKNHRVLNLHRFMIHFAEHSIGSPARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGMTNSQSRIADDSQSRRDDFFARLDLQNKAALTEAKEGKDLADIQSIISVTSGPILQNFPRSDSSTPESNKFNPSASSSSSSGTFSTEYHEEEAQDAFAAEFRKMKLKGEFPCRLCSAIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSSDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNESVERTSPRVSKDDVRKSLIFAQERDDLQHQAQIHYTSPAHMDGRGEIRIIDDAKLNNTVLSMQNMNHFEKINVFSMPSQSLEAPQRSVDERPDTRSDCSKPDDDAESRSSEASISLVNDINTDSHQRIQASPMNLKKRSSLSDTAGEDGPLDLSMDVLDLSKKSKERDDDLGVSGLHENEFARNQEQLYNATSQLLLTEAILKARHGKSHTTYLLSFIYRGAIYENHRILSTGIGAGLLPPYMFNPHVFGQDYTTKERLQRELVRGLQLTSGGTLVEPSIVNTGFPAFCQGRDFNSQAVGEQSEYAKLISSKMANQGHSSRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLLQNLGQSTSQVNQNYSNILPKVDQSPANSDLAKHPISDQVKYAILAQQLKANKTEDNDSEEELVIDEDPQEKDHQESQEQEKSLLRGQLEGTETGKEVTVKEEVMEPMNCDSQEDAVESSNNEEGEDEGPKTSDTEKPAETEKSDASSNPVLKTEALEVKDEKVEDGTTDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSLNSVNASSKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVINNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKVTSRPDSPSSEPQNSPQECSKQNNEQSDYDSQSSSVSEGTEVSSMVEIAKTPNNTSSSTNDTPRSRRPSPRSSPGPSDVPFKCHLCDCGFADRQDCLEHIKVNHKRSYEMLVAKGALDMDIDAVEDQQPPPQQTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPTQPSSIALRSQQQTPVHATNNNGNSRLQDRISLPTVAPVVTSDAVSSGLIRFNPYEKLTTLSGKLASIPQNVNSETNESADNDLISNLLGIRDKNFIDRVLQASADDAAKLLGVKHSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_01067122;
80% Identity: -