Basic Information

Insect: Bombus breviceps
Gene Symbol: Rreb1
Assembly: GCA_014825925.1
Location: CM026181.1:8991202-8999823[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.05 3.7 8.0 0.2 9 23 2 17 1 17 0.94

2 14 0.0093 0.69 10.3 0.0 1 23 112 136 112 136 0.95

3 14 0.058 4.3 7.8 3.0 2 23 142 164 142 164 0.95

4 14 1.5 1.1e+02 3.4 0.6 1 19 220 238 220 240 0.89

5 14 0.43 32 5.1 0.1 1 23 353 375 353 375 0.96

6 14 2.3e-05 0.0017 18.5 0.3 1 23 384 406 384 406 0.98

7 14 0.001 0.074 13.4 2.8 1 23 412 435 412 435 0.97

8 14 0.00037 0.027 14.7 3.0 1 23 817 840 817 840 0.97

9 14 0.00053 0.039 14.2 0.1 3 23 1116 1136 1114 1136 0.97

10 14 0.47 35 5.0 6.0 1 23 1142 1165 1142 1165 0.97

11 14 0.0033 0.25 11.7 2.2 1 23 1203 1227 1203 1227 0.97

12 14 5.1 3.8e+02 1.7 7.4 1 23 1311 1334 1311 1334 0.96

13 14 0.009 0.67 10.4 0.4 2 23 1385 1406 1384 1406 0.94

14 14 1.1 79 3.8 8.2 1 23 1412 1434 1412 1434 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.05	3.7	8.0	0.2	9	23	2	17	1	17	0.94
2	14	0.0093	0.69	10.3	0.0	1	23	112	136	112	136	0.95
3	14	0.058	4.3	7.8	3.0	2	23	142	164	142	164	0.95
4	14	1.5	1.1e+02	3.4	0.6	1	19	220	238	220	240	0.89
5	14	0.43	32	5.1	0.1	1	23	353	375	353	375	0.96
6	14	2.3e-05	0.0017	18.5	0.3	1	23	384	406	384	406	0.98
7	14	0.001	0.074	13.4	2.8	1	23	412	435	412	435	0.97
8	14	0.00037	0.027	14.7	3.0	1	23	817	840	817	840	0.97
9	14	0.00053	0.039	14.2	0.1	3	23	1116	1136	1114	1136	0.97
10	14	0.47	35	5.0	6.0	1	23	1142	1165	1142	1165	0.97
11	14	0.0033	0.25	11.7	2.2	1	23	1203	1227	1203	1227	0.97
12	14	5.1	3.8e+02	1.7	7.4	1	23	1311	1334	1311	1334	0.96
13	14	0.009	0.67	10.4	0.4	2	23	1385	1406	1384	1406	0.94
14	14	1.1	79	3.8	8.2	1	23	1412	1434	1412	1434	0.98

Sequence Information

Coding Sequence: ATGGCGTTCACCACGAACGGCAATATGAACAGGCATTTGAGGACAGCGCACAGAGGCGCCTCGCCTAACAGCTGCACCGACTCCGAGGGTAGCAGCGACTCGGACAAATCATCCAGGCAGCGACATCTCGAGGAATACAACAACAACGAGATCACAAAAAGAAACTCGCCAAATATCGGGGACAGACGGAACGAGGAACAGACCTCGTCGTTAACTGGAAAGAGAAAGTGCCCTAACTATGCGAGCGACAGCGAAACACATAAGAGGCACAAGATTCTCCTAAATAGCTCGAGAAGCGAGATGAAATCGAGACCGGACGACAACCAGAAGATTTACAATTGTCCAGTATGCGGACGACAGGATTTTGCTACTAGCGCCCTCTTGGAAGCGCATCTGGAACGAAGTCATCCGGAATTCCCAGCGAAATGCGACACGTGCAACTTGTCGTTCAAAAACCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTCGCGGAACACTCGATAGGAAATACCGCGAGAAATCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTCTCGTCCGATAAGTTCCCAGCAATAGCGAGAGCTGTCTGCGAACAATCGCTTCACCGGCCAGCTTCTGGCGAGGTAGCCAAATTCCAATGCTCCAAATGTCTGCGAGCATTCCCATGTAGATCCGCGTTGGACGCCCACGAAACTGACTGCGGCACGATGAATTTACAAAGCAGAACCATGGACGATAGCCAATCGAGAAGGGACGATTTCTTCGCTGGCTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAGGAAGGCAAAGATCTTGCCGATATCCAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAGTTTTCGGTCAGACGCCAGTACACCCGAGAACAACATCAAATTTAATACCAGTGTAAACTCTTCTGGTAGTTCAAGTACGTATTGCGCGGAGTACCACGAGGAGGAAGCTCAAGACGCGTTTTCTGCGGAAttcagaaaaatgaaattgaaaggaGAGTTCCCTTGCAGGCTCTGTTCCTCGATATTTCCTAATCTAAGAGCCCTAAAAGGTCACAACAGGGCGCACATGGGCGTGGGACCTGGCATGCCATATCCTTGTAATATGTGCCCTTATACCAGCACTGATAAAGCGACTCTGGTGAGGCATCTGAGGTCCCACAATGGCGACAGACCTTACGAATGCTCTCTCTGCAATTACGCTTTCACGACTAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGAGAAGACATTAAGAGCGTTCTCATCTATCACCCAAATGAAGATTCTACGAACGAGAACGTGGAACGTGGAAACTCACCCAGAGTTTTGAAAGATGAAGTGAGGAAGAGCCTGGTATATCCGTCAGAACGCGAAGATCTTCACCACCAGCCGCAAATACATTACCCTCCGGTTCCTATGGAGGTAAGAGGTGAGATCAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCGATGTCGATGTACAGCACTAGCCactttgaaaaaaatgatGCGTTTTCAAGGCATGGTCAGCCTCTGGAGCTTACCCAAAGGAACTCCGAGGAGACAAAACCTGGTCAAGATGCCAAATCGGATTATTCGAAGTTGGACGACGATTTGGAGTCGAGGTCATCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCtatgaatttaaagaaagGTCTCAACATATCGGAAAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTGGATCTCAGCAAGAAGTCGAAGGAGAAGGAGGACGATAACCTCGCCGCGGCTCACGAACAATTTGGAAAAAACCAAAAAGATTTGTACAGTGCCACCAGTCAATTATTGTTGACCGAGGCTTTGTTGAAGGCTGGCCAGGGTAGCTCTCAACCTACATCTCTGGAAGCTCTGTACGCTAACGCAATCTACAGAAACTTCAGTACATTCCCTGGTAGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAATCCTCATGTCTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGTCTACAGCTGACAAGCGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCGCGGGATTTGCCACCTTTTCTCAAAATAGAGACATGAACTCCCAGTCTCATTCGACAACCGACCAAAGTGAATATGCCAAATTAATATCTTCTAAGATGGCCAACAAGAGTCTGACAACCCGCGATAAACCAGACAATCTGCCCTCGTCCAATTCCGTGAAGATGGTGATCAAAAATGGAGTCCTGATGCCTAAACAAAAACAACGAAGGTACAGAACCGAGAGGCCTTTTACCTGCGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAACAACATCCTCAGCACTGGAGCCAGCGACCCAGAGGAGGTCACTCGACAAGGGGAAGACCACCTTCCAGCCATCCTACGCTGATTCAAAACCTCGGACAGGCAACTTCTCAAGGCAGTCAATCGTATAACAACATCCTGCCAAAAGTGGAACAGTCAACGAATCCGGAATTTACGAGGCATTCTATCTCCGACCAAGTGAAGTACGCTATCCTGGCACAGCAATTAAAGGCGAACAAAATGGAAGACAATGACTCCGAAGAAGAACTGGTCATAGACGAAGGGCCacaggagaaagaaaatcaagaatCTCAGGATCAAAGGGAGAAGAGTCTGTTGAGAGGACAATTGGAAGCTACAGAATCTACGAAAGCAATTGTAGTGAAAGAAGAAGCCATGGAATGTTCAGACGATGGCCAAAACGAGACAAACGTTGAGCTGGAGAAGAACGAACAAACTGTTACTGAACAACAGAAAAAATCTGACACGGAGAAGGCTATTGTCGCGGAAAATTCGGTTGAAAAGATTCCCGACAGAGTGCTCAAAACGGAATCAGCTAATACGAACAGCGAGAAGATGGAGGATGCAGCTGATCTCGCCAGCGTGTCAGAACTGTTAGACAATGCCTCCCAACAATACCAGCAGTTTCAACCCCAGTATTTAAGCGACGAAGAAGGTCTAGTAGCATCGAACAGTGATTGCAATAATTCCGGCAGTGATGAGAAATCCGACTCCGTAAATTCATCACATTCGACGAACGcgtcgaaaaaaaagaagaaaaaaaagaaaaaaaagaagaaatcggcaTATTCAATGGCCCCGAACAGAGTAATCTGCCCATACTGTGAACGACCATTCCCGTGGACCTCGTCTCTCAGACGACATATTTTGACACACACTGGTCAAAAACCTTATCAATGCGTTCACTGTTCGTTGCTATTCACAACAAAATCCAACTGCGACCGTCATCTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGCAGAGTAAGAAACTCTTCTTCTCCAGATTCTCAAGCGGTCATCAACAATAGTAACTCGTTCTCCATGAGGAACGTTCCTGAAAGACCCTACAAGTGCAATCAGTGTCCCAGCTCAACATTTTCGACGTTGGGTAACCTAAAGAAACATCGTTCCACTAAACACGCTCGGAAGATGAAGACCAGGTCGGACACTCCATCCAGTGAACCTCAAACCAGCCCGCAGGAGTGTCCAAAGCCGAACAACGAACAAACTGATTATGATAGTCAGTCTTCGAGCGTGTCTGAAGGGGTAGAAACTTCTTCGATGCCAGGGCTTACTAAATCGAATTCTAACGCTTCGCAATTGGCCAACGAAACAGCTAGGTCAAGGAGACCTTCACCGAGATCATCACCTGGGCCCAGTGATGTGCCTTTCAAGTGCCACTTGTGCGACTGTGGTTTCGCAGAACGGCACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGACATGGACATCGACGCGGTTGAAGACCAACAACAGCCGCCTGCCCAACATCATACCAGCGACGGAGAAGAAAAACGGGGACGTTTCCCAGACTATAGTAACAGGAAGGTTGTATGCGCATTCTGTATGAGGCGGTTCTGGTCTGCAGAGGATCTCCGGCGCCATATGAGAACACACACCGGAGAACGACCTTTCTCCTGCGACATATGCTGCAGAAGATTCACCTTGAAACATAGTATGCTGCGGCACAGAAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCggagacgaagaaaattcaCCTGCACAGCCACGTACGATCACACCGCGAAgtcaacagcaacaacaaatTCTGGTGACAGCCAACAACGAAAATTCGCGTATTCAGGACAGAATCTCTTTGCCAACTGTTACTCCAGTCGCGACCGGTGATGCAGCCCCGAGTGGATTAATAAGATTCAATCCATACGAGAAATTAACCACTCTGACAGGAAAATTGGCCAGTATTCCATCAAACGCAAATCCAGATGCAGAGAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTGCTACAGGCATCCGCTGATGACGCCGCCAAGCTATTAGGAGTAAAGCGTAGCCATGAGTGA
Protein Sequence: MAFTTNGNMNRHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDRRNEEQTSSLTGKRKCPNYASDSETHKRHKILLNSSRSEMKSRPDDNQKIYNCPVCGRQDFATSALLEAHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSIGNTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTMDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQSFRSDASTPENNIKFNTSVNSSGSSSTYCAEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEVRKSLVYPSEREDLHHQPQIHYPPVPMEVRGEIRIIEEAKLQNSSMSMYSTSHFEKNDAFSRHGQPLELTQRNSEETKPGQDAKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNISENIGEDGPLDLSMDVLDLSKKSKEKEDDNLAAAHEQFGKNQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFSTFPGSVGAGILPPYMFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFATFSQNRDMNSQSHSTTDQSEYAKLISSKMANKSLTTRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGSQSYNNILPKVEQSTNPEFTRHSISDQVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKENQESQDQREKSLLRGQLEATESTKAIVVKEEAMECSDDGQNETNVELEKNEQTVTEQQKKSDTEKAIVAENSVEKIPDRVLKTESANTNSEKMEDAADLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSDTPSSEPQTSPQECPKPNNEQTDYDSQSSSVSEGVETSSMPGLTKSNSNASQLANETARSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPAQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPRTITPRSQQQQQILVTANNENSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00214579;
80% Identity: -