Basic Information

Insect: Bombus ignitus
Gene Symbol: Rreb1
Assembly: GCA_014825875.1
Location: CM026145.1:10898402-10928924[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0069 0.72 10.7 0.2 1 23 39 61 39 61 0.96

2 16 0.00028 0.029 15.1 0.4 1 23 75 97 75 97 0.97

3 16 6.7e-07 7.1e-05 23.3 1.2 1 23 103 126 103 126 0.98

4 16 0.61 64 4.6 0.0 1 23 221 245 221 245 0.87

5 16 0.061 6.4 7.7 3.0 2 23 251 273 251 273 0.95

6 16 1.6 1.7e+02 3.3 0.6 1 19 329 347 329 349 0.89

7 16 0.45 47 5.0 0.1 1 23 462 484 462 484 0.96

8 16 2.4e-05 0.0025 18.4 0.3 1 23 493 515 493 515 0.98

9 16 0.001 0.11 13.3 2.8 1 23 521 544 521 544 0.97

10 16 0.00039 0.041 14.6 3.0 1 23 925 948 925 948 0.97

11 16 0.00056 0.059 14.1 0.1 3 23 1225 1245 1223 1245 0.97

12 16 0.5 52 4.9 6.0 1 23 1251 1274 1251 1274 0.97

13 16 0.0035 0.37 11.6 2.2 1 23 1312 1336 1312 1336 0.97

14 16 5.4 5.7e+02 1.6 7.4 1 23 1420 1443 1420 1443 0.96

15 16 0.0095 1 10.3 0.4 2 23 1494 1515 1493 1515 0.94

16 16 1.1 1.2e+02 3.7 8.2 1 23 1521 1543 1521 1543 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0069	0.72	10.7	0.2	1	23	39	61	39	61	0.96
2	16	0.00028	0.029	15.1	0.4	1	23	75	97	75	97	0.97
3	16	6.7e-07	7.1e-05	23.3	1.2	1	23	103	126	103	126	0.98
4	16	0.61	64	4.6	0.0	1	23	221	245	221	245	0.87
5	16	0.061	6.4	7.7	3.0	2	23	251	273	251	273	0.95
6	16	1.6	1.7e+02	3.3	0.6	1	19	329	347	329	349	0.89
7	16	0.45	47	5.0	0.1	1	23	462	484	462	484	0.96
8	16	2.4e-05	0.0025	18.4	0.3	1	23	493	515	493	515	0.98
9	16	0.001	0.11	13.3	2.8	1	23	521	544	521	544	0.97
10	16	0.00039	0.041	14.6	3.0	1	23	925	948	925	948	0.97
11	16	0.00056	0.059	14.1	0.1	3	23	1225	1245	1223	1245	0.97
12	16	0.5	52	4.9	6.0	1	23	1251	1274	1251	1274	0.97
13	16	0.0035	0.37	11.6	2.2	1	23	1312	1336	1312	1336	0.97
14	16	5.4	5.7e+02	1.6	7.4	1	23	1420	1443	1420	1443	0.96
15	16	0.0095	1	10.3	0.4	2	23	1494	1515	1493	1515	0.94
16	16	1.1	1.2e+02	3.7	8.2	1	23	1521	1543	1521	1543	0.98

Sequence Information

Coding Sequence: ATGGATTACTCGACGAAAGTTACTGTTAAGAACGGACCCACCCAGGAAAATGAGAACGAAACACCAGCTGATGCTGCATCCTCACCATCTAGTGTTGAACTACCAGAAAGCGCACACCCATGTCCAGCTTGTTCGACCGTTTTGCCCACCTCCAGGGAGTTAACGAACCACCTACGCGGCCATAATTCGCCTCGCAGCACAGACTGTAGCGGCGAGGATGACTATTGCTGCGGCGTGTGCAATAAGGTGCTGAGCTCTGCAAGTTCCCTCGACAGACATGTATTGGTGCACTCCGGGGAACGGCCGTTCAAATGCAAGTACTGTGAGATGGCGTTCACCACGAATGGCAATATGAACAGGCATTTGAGGACAGCGCACAGAGGCGCCTCGCCTAACAGCTGCACCGACTCCGAGGGTAGCAGCGACTCGGACAAATCATCCAGGCAGCGACATCTCGAGGAATACAACAACAACGAGATCACAAAAAGAAACTCGCCAAATATCGGGGACAAACGGGACGAGGAACAGACCTCGTCGTTAACTGGAAAGAGAAAATGCCCTAATTATGCGAGCGACAGCGAAACACAGAAGAGGCATAAGATTCTTCTAAATAGTTCGAGAAGCGAGATGAAATCGAGACCGGATGACAACCAGAACATTTACAATTGTCCAGTATGCGGGCGACAGGATTTTGCCACTAGCGCCATCTTAGAAGCGCATCTGGAACGAAATCATCCGGAATTCCCTGCGAAGTGCGACACGTGCAACTTGTCGTTTAAAAACCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTCGCGGAACACTCGATGGGAAATACCGCGAGAAATCTGAGAAATTCGATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTCTCGTCCGATAAGTTCCCAGCAATAGCGAGAGCTGTCTGCGAACAATCGCTTCACCGGCCAGCTTCAGGCGAGGTAGCCAAATTCCAATGCTCCAAATGTCTGCGAGCATTTCCTTGTAGATCCGCGTTGGATGCCCACGAAACTGACTGCGGCACGATGAATTTGCAAAGCAGAACAACCGACGACAGCCAATCGAGAAGAGACGATTTTTTCGCTGGCTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAGGAAGGCAAAGATCTTGCTGATATCCAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAGTTTTCGATCAGACGCCAGCACGCCCGAGAACAACATCAAATTTAATACCAGTGTAAACTCTTCTGGTAGTTCAAGTACGTATTGCACAGAGTACCACGAGGAGGAAGCTCAAGACGCGTTTTCTGCGGAGTTCAGAAAAATGAAATTGAAAGGGGAGTTCCCTTGCAGGCTCTGTTCCTCGATATTTCCTAATCTAAGAGCTCTAAAAGGTCACAATAGGGCGCACATGGGCGTGGGACCTGGCATGCCATATCCTTGTAATATGTGCCCTTATACCAGCACTGATAAAGCGACCCTGGTAAGGCATCTCAGGTCTCACAATGGCGACAGACCTTACGAATGCTCTCTCTGTAATTACGCTTTCACAACTAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGAGAGGACATTAAAAGCGTTCTCATCTATCATCCAAATGAAGATTCTACGAACGAGAACGTGGAACGCGGAAACTCGCCCAGAGTTTTGAAGGATGATGTGAGGAAGAGCCTGGTATATCCGCCAGAACGCGAAGATCTTCACCACCAGCAAATACATTATCCTCCGGTTTCTATGGAGGCAAGAGGTGAGATTAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCGATGTCGATATACAGTACTAGCCACTTTGAAAAAAATGATGCGTTTTCAAGGCATGGTCAGCCTTTGGAGCTGACCCAAAGGAACTCCGAGGAGACAAAACCTGGTCAAGATGCCAAATCGGATTTTTCGAAGTTGGACGACGATTTGGAGTCGAGATCGTCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTAAAGAAAGGTCTCAACATATCGGAAAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTGGATCTCAGCAAAAAGTCGAAGGAGAAGGAGGACGATAACTTCGCCGCGGCTCACGAACAATTTGGAAAAAACCAAAAAGATTTGTACAATGCTACCAGTCAATTATTGTTGACCGAGGCTTTGTTGAAGGCTGGCCAGGGTAGTTCTCAACCTACATCTTTGGAAGCTCTGTATGCTAACGCAATCTACAGAAACTTCAGTACATTCCCTGGTAGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAATCCTCATGTCTTTGGCCAGGATTTCTCTATGAAAGAAAGATTACAGAAGGAATTGGTCAGAGGTCTACAGTTGACAAGTGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCGCGGGATTTACCGCCTTTTCTCAAAATAGAGACATCAATTCCCAGTCTCATTCAACAACCGACCAAAATGAATATGCCAAATTAATATCTTCTAAGATGGCCAACAAGAGTCTGACAACCCGTGATAAACCAGACAATCTGCCCTCGTCCAATTCCGTGAAGATGGTGATCAAAAATGGAGTCCTGATGCCTAAACAAAAACAACGAAGGTACAGAACTGAGAGGCCTTTTACCTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAACAACATCCTCAGCACTGGAGCCAGCGACCCAGAGGAGGTCACTCGACAAGGGGAAGACCACCTTCCAGCCATCCTACGCTGATTCAAAACCTTGGACAGGCAACTTCTCAAGGCAGTCAATCGTACAACAACATCCTGCCAAAAGTGGAACAATCAACGAATCCGGAATTTACGAGGCATTCTATCTCCGACCAAGTGAAGTACGCTATCCTGGCACAGCAATTAAAAGCAAACAAGATGGAAGACAATGACTCTGAAGAAGAACTGGTCATAGACGAAGGGCCACAGGAGAAAGAAAATCAAGAATCTCAGGATCAAAGGGAGAAGAGTCTGTTGAGAGGACAATTGGAAGCTACAGAATCTACGAAAGAAACTGCGGCGAATGAAGAAGCCATGGAATGTTCGAACGATGACCCAAACGAGACAAATATTAAGCTGGAAAAGAACGAACAAACTGTTACTGAACAACAGAAAAAATCTGACACGGAGAAGACTACTGTGACGGAAAATTCAGTTGAAAAGAATCCTGACAGAGTGATCAAAACGGAATCAGTTAATATGAACAGCGAGAAGATGGAGGATGGAGCACCTGATCTCGCTAGCGTGTCAGAACTATTAGATAATGCCTCCCAACAATACCAACAATTTCAACCCCAGTATTTAAGCGATGAAGAAGGTCTAGTAGCATCGAACAGTGATTGCAATAATTCTGGCAGTGATGAGAAATCCGACTCTGTAAATTCATCACATTCGACGAACGCGTCGAAGAAAAAGAAGAAAAAGAAGAAAAAAAAGAAGAAATCAGCATATTCAATGGCCCCGAACAGAGTAATCTGTCCATACTGTGAACGACCATTCCCATGGACCTCATCTCTCAGACGACATATTTTGACACATACTGGACAAAAACCTTATCAATGCGTTCACTGTTCGTTGCTATTCACAACGAAATCCAACTGCGATCGTCATTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTTAGAAACTCTTCTTCTCCGGATTCTCAAGCGGTCATCAACAATAGTAACTCGTTCTCCATGAGGAACGTTCCCGAAAGACCCTACAAGTGCAATCAGTGTCCCAGCTCAACATTTTCAACGTTGGGTAACCTAAAGAAACATCGTTCCACTAAACACGCTCGGAAGATGAAGACCAGGTCGGACACTCCATCCAGTGAACCTCAAACCAGTCCACAGGAGTGTCCAAAGCCGAATAACGAACAAACTGATTATGATAGTCAGTCTTCGAGCGTGTCTGAAGGGATAGAAACTTCTTCGATGCCAGGACTTACTAAATCGAATTCTAACGCTTCACAATTGGCCAACGAAACAGCTAGGTCAAGGAGACCTTCACCGAGATCATCACCTGGGCCCAGTGATGTGCCTTTTAAGTGCCACTTGTGCGACTGTGGTTTCGCAGAAAGACACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCATTGGACATGGACATCGACGCGGTTGAAGACCAACAACAACCGCCACCGCAACATCATACCAGCGATGGAGAAGAAAAACGAGGACGTTTTCCAGACTATAGTAACAGGAAGGTCGTATGTGCATTCTGTATGAGGCGGTTCTGGTCTGCGGAGGATCTCCGGCGCCATATGAGAACACACACCGGAGAACGACCTTTCTCCTGCGATATATGCTGCAGAAGATTCACCTTGAAACATAGTATGCTGCGGCACAGAAAGAAGCACGAATCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAATTCACCTGCACAGCCACCTACGATCACACCACGAAGTCAACAACAACAAATTCTGGTGGCAGCCAACAACGGAAATTCCCGTATTCAAGACAGAATCTCTTTACCAACTGTTACTCCAGTCGCGACCGGTGATGCAGCCCCGAGTGGATTAATAAGATTCAATCCATACGAGAAATTAACCACTCTGACAGGGAAATTGGCCAGTATTCCATCAAACGCAAATCCAGATGCAGAAAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCCGCCAAGCTATTAGGAGTAAAGCGTAGCCATGAGTGA
Protein Sequence: MDYSTKVTVKNGPTQENENETPADAASSPSSVELPESAHPCPACSTVLPTSRELTNHLRGHNSPRSTDCSGEDDYCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDKRDEEQTSSLTGKRKCPNYASDSETQKRHKILLNSSRSEMKSRPDDNQNIYNCPVCGRQDFATSAILEAHLERNHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSMGNTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQSFRSDASTPENNIKFNTSVNSSGSSSTYCTEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDDVRKSLVYPPEREDLHHQQIHYPPVSMEARGEIRIIEEAKLQNSSMSIYSTSHFEKNDAFSRHGQPLELTQRNSEETKPGQDAKSDFSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNISENIGEDGPLDLSMDVLDLSKKSKEKEDDNFAAAHEQFGKNQKDLYNATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFSTFPGSVGAGILPPYMFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFTAFSQNRDINSQSHSTTDQNEYAKLISSKMANKSLTTRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGSQSYNNILPKVEQSTNPEFTRHSISDQVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKENQESQDQREKSLLRGQLEATESTKETAANEEAMECSNDDPNETNIKLEKNEQTVTEQQKKSDTEKTTVTENSVEKNPDRVIKTESVNMNSEKMEDGAPDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSDTPSSEPQTSPQECPKPNNEQTDYDSQSSSVSEGIETSSMPGLTKSNSNASQLANETARSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQILVAANNGNSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00222715;
80% Identity: -