Basic Information

Insect: Perdita meconis
Gene Symbol: RREB1
Assembly: GCA_030770465.2
Location: JASKOS020000010.1:2605111-2613238[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0017 0.29 12.8 0.1 1 23 87 109 87 109 0.96

2 15 0.00032 0.055 15.1 0.4 1 23 124 146 124 146 0.97

3 15 7.8e-07 0.00013 23.3 1.2 1 23 152 175 152 175 0.98

4 15 0.027 4.6 9.0 0.0 1 23 268 292 268 292 0.95

5 15 0.07 12 7.7 3.0 2 23 298 320 298 320 0.95

6 15 1.8 3.2e+02 3.2 0.6 1 19 376 394 376 396 0.89

7 15 0.19 32 6.4 0.1 1 23 509 531 509 531 0.96

8 15 2.8e-05 0.0048 18.4 0.3 1 23 540 562 540 562 0.98

9 15 0.0012 0.21 13.3 2.8 1 23 568 591 568 591 0.97

10 15 0.00045 0.077 14.6 3.0 1 23 961 984 961 984 0.97

11 15 0.00064 0.11 14.1 0.1 3 23 1258 1278 1256 1278 0.97

12 15 0.41 70 5.3 4.2 1 23 1345 1369 1345 1369 0.90

13 15 5.5 9.6e+02 1.7 7.1 1 23 1452 1475 1452 1475 0.95

14 15 0.011 1.9 10.2 0.4 2 23 1537 1558 1536 1558 0.94

15 15 3.9 6.8e+02 2.2 8.7 1 23 1564 1586 1564 1586 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0017	0.29	12.8	0.1	1	23	87	109	87	109	0.96
2	15	0.00032	0.055	15.1	0.4	1	23	124	146	124	146	0.97
3	15	7.8e-07	0.00013	23.3	1.2	1	23	152	175	152	175	0.98
4	15	0.027	4.6	9.0	0.0	1	23	268	292	268	292	0.95
5	15	0.07	12	7.7	3.0	2	23	298	320	298	320	0.95
6	15	1.8	3.2e+02	3.2	0.6	1	19	376	394	376	396	0.89
7	15	0.19	32	6.4	0.1	1	23	509	531	509	531	0.96
8	15	2.8e-05	0.0048	18.4	0.3	1	23	540	562	540	562	0.98
9	15	0.0012	0.21	13.3	2.8	1	23	568	591	568	591	0.97
10	15	0.00045	0.077	14.6	3.0	1	23	961	984	961	984	0.97
11	15	0.00064	0.11	14.1	0.1	3	23	1258	1278	1256	1278	0.97
12	15	0.41	70	5.3	4.2	1	23	1345	1369	1345	1369	0.90
13	15	5.5	9.6e+02	1.7	7.1	1	23	1452	1475	1452	1475	0.95
14	15	0.011	1.9	10.2	0.4	2	23	1537	1558	1536	1558	0.94
15	15	3.9	6.8e+02	2.2	8.7	1	23	1564	1586	1564	1586	0.97

Sequence Information

Coding Sequence: ATGATCTTAGGATCCAGCGAACCGTGTACCGCTGATAACGTGATGTTTTGTCTGCTTCCTGTTACGATAATACGGATCGGCTTCGAGGTTGATATTAGCAGATTATCTCACTCTTCGAACGAGAGGAACGTTCCTCGAGATAAAGCCGAAGACGCAAGATCACTTACTGTGAAGAGTGGCCCCTATCAGGGACAGGACAACGAAGTCCAAGCAGATGCTGCATCACCATCATCGAGCGTCGAATTGCCCGAGAGCGCTCACCCCTGTCCCGCCTGCCCCACAGTATTGTCGAGCTCGAGAGAGTTGACGAACCACCTGCGCGGCCACAACTCTCCGCGCAGCGGCACCGACTGCAGCGGCGAGGACGACTACTGCTGCGGGGTGTGCAACAAGGTGCTAAGTTCCGCAAGTTCCTTGGACAGACACGTGCTAGTTCATTCCGGCGAACGTCCCTTCAAGTGCAAGTACTGCGAGATGGCGTTCACAACGAACGGAAACATGAACAGGCACTTGAGAACCGCGCATCGTTCCGCATCGCCGCACAGTTACACCGACTCCGAGGGCAGCTCGGACTCTGAGAAACCACCGTCGAAAAGGCGGCACATCGAAGAATACAACAACAACGAGATCGCGAAGAGGAACTCGCCGGACTTTATCGATAGACAAGAAAATTCACCGACTCTGGGGAAGAGGAGGTGCTCCGGCTTCCTGAGCGATAGCGATGGCCAAAAGAGACACAAGATTCTGTTGAACAGTTCGAGGACCGAGATGAAACCTCGTCCCGACGACACTCAGAATGTTTACAACTGCCCCGTCTGCGGGAGGCAGGACTTCGCTACCAGCCCCCTCCTCGAGGCTCACCTGGAGCGCAGTCACCCGGATTACCCCGCCAAGTGCGACACTTGCAATCTCTCGTTCAAGAATCACCGCGTGTTGAATCTACACCGGTTCATGATCCATTTCGCGGAAAATTCGATGGGCAACACTGCGAGGAACCTCCGGAACTCCGTCGTCGGCTTCAACGACCTGACATTCGTCGACTTCTCCTCGGACAAGTTCCCGGCGATCGCCAGAGCTGTCTGCGAGCAGTCTCTGCATCGCCCGGCCTCCGGAGAAGTCGCCAAGTTTCAGTGCTCCAAGTGCCTCCGCGCATTTCCTTGCAGATCTGCGTTGGACGCGCACGAAACCGACTGCGGAATCACCAACTCTCAGGCGAAGATCGCCGACGACAAGTCGAGAAGAGACGACTTCTTCGCGGGCTTGGATCTGCAGAACAAAGCCGCGATGACTGAGGCCAAGGAAGGCAAGGATCTCGCCGACATCCAGAGCATCATCTCCGTCACGTCCGGACCGATATTGCAGAGCTTTCCTCGATCCGATGCCAGCACTCCCGAGAACAGCGTCAAGTTTAATCCCAGCGTCAGCTCTTCAGGATCCTCGGGAACTTTGTCGTCAGAGTACCACGAGGAAGAGGCTCAAGATGCATTCGCAGCCGAGTTCAGGAAGATGAAACTGAAAGGCGAATTTCCCTGCAGACTCTGCACCGCCATTTTCCCGAACCTGAGAGCGCTGAAGGGCCACAACAGGGCACACATGGGCGTCGGCCCTGGCATGCCTTATCCCTGCAACATGTGCCCTTATACCAGCACTGATAAAGCCACTCTGGTCAGGCATTTGAGATCTCATAACGGCGACAGGCCTTATGAATGCTCCCTTTGCAACTACGCCTTCACCACCAAGGCGAACTGCGAACGCCATGTGAGAAACCGCCATGGAAAACTCACCAGAGAGGATATCAAGAGCGTCCTGATCTACCATCCCAACGAGGACTCTACGAACGACAGCGTGGAGCGCAGCTCGCCCAGGGTGATGAAAGACGAAGTGAGGAAAAATCTGGTGTATCCCAGCGAGCGCGACGATCTTCAGCATCAAACCCAGCTGCAATATCCGCCCGTCGCGATGGAAGGACGCGGGGAAATCAGAATCATCGAGGAGGCGAAGCTGCACAACTCTGCGATATCCATGCACAACCCTTACGAAAAGAACGACGCGTTCCCGAGACCTGGACAGCCGATGGAGCTGACGCACAGGAACGCGGAAGAGGCAAAGGCCGACGCGAAGCTCGAAGACGACCTGGAGTCGAGGTCGTCGGATGGGAGCGTCTCTCTAGTCAACGAAACCAAATCCGATTCGCACCAAAGAATACAAGCTAGTCCGATGAACCTGAAGAAGGGACTGAGCGAGAACACGGAAGACGGTCCCTTGGATCTTTCTATGGATGTTTTGGACCTCAGCAAGAAGTCGAAGGACAAGGAGGACGTGGACTTCGCCGGGGCTCAGGAGCAATTCGGAAAAAACCACAAGGATATCTACAACGCGACCAGTCAGCTGCTCCTGACGGAAGCTTTTCTGAAGGCTGGCCAAGGTAGTTCTCAGCCGACTTCCTTGGAGGCCCTTTATGCCAACGCTCACATGCTCTACCGGAACTTCGGGACTTTCTCCGCCGGCGTCGGCGCGGGAATCTTGCCGCCTTACATGTTCAACCCCCACGTCTTCGGCCAGGACTTTACTATGAAGGAGAGACTGCAGAAGGAGTTAGTGAGAGGATTGCAACTGACCAGCGGTGGCACTTTGGTGGAGCCGACCATCGGCGCCGCCGGGTTCACCGCCTTCGCTCAAGCCAGAGACATGAACTCGCAATCTGCCAACGAGCAGAGCGAGTACGCGAAGCTGCTGTCCTCGAAGATGGCGAACAAAGCGCTGTCAGGTCGCGAGAAGCCGGAGAACCACATACCTTCTTCGAACTCGGTGAAGATGGTGATCAAGAACGGCGTCCTAATGCCCAAGCAGAAGCAAAGGCGCTATAGAACTGAGAGACCTTTTACCTGCGAGCATTGCTCGGCTAGATTTACTCTGAGAAGTAACATGGAAAGACATATTAAGCAGCAGCATCCTCAGCACTGGAGCCAAAGACCCAGAGGAGGACATTCGACTAGAGGAAGACCTCCATCGAGTCATTCTACTTTGCTGCAGAACCTTGCACAAACTGCGGCTCAGGTGAGCCCGTCTTACCAAAATATTTTGCCCAAAGGGGATCATTCTTCAAACTCCGAGTACTCGAAGCATCCCATCTCGGACCAAGTGAAGTACGCCATCCTGGCGCAGCAGTTGAAGGCCAACAAAGCCGAGGATAACGATTCAGAAGAGGAGCTCGTGATCGACGAAGATCCGCAAGATAAAGACACACAGGAATCtcaaaaacagaaaaacaaaACCACTAGTTTGTTACGAGGACAACTAGAAAGCTCAGAACCTGTTAAAGAAGTCCtcatgaaagaagaaaacgaagAGACTACGAAGGATGCGCCGGAGTCGATGAACGCTGAATCCACGAGCAACGAGAATCCTACTGAAGAAGCGAAGGATTCTGATTCCGAGAAACCCATGGAGACTGAGGAAGGCGAGGATAGTGAAGCGGACCAAGAGATGAAAACTGAACCTGAAGAGAAGTCGGAGAAGACTGAAGACGGGGCAGACTTGGCAAGCGTCTCCGAATTGCTGGACAACGCTTCCCAGCAATACCAGCAGTTCCAGCCGCAGTATCTCAGCGACGAGGAGGGATTAGTAGCATCAAACAGCGACTGTAACAACTCCGAGAGCGACGAGAAGTCAGACTCTGTGAATTCACTGAACTCTGTAAGTACCTCTAccaaaaaaaagaggaagaaaaagaagaagtcCGCATACTCCATGGCACCGAACCGAGTAATCTGTCCGTATTGTGAGCGACCGTTCCCCTGGACGTCGTCCTTGAGACGGCACATCCTGACTCACACGGGACAGAAACCTTATCAGTGCATCCACTGCTCGCTGCTATTTACTACCAAATCGAACTGCGATCGTCACTTGTTGAGGAAGCACAAGGCCAACCCGAACAAAATGCGCAGAGCGAGGAACTCGTCGTCCCCGGATTCACAAGCTGTGATCAGCAGCAACAACTCCTTTCCCATGAGGAACGTTCCTGAGAGGCCATACAAGTGCAACCAGTGTCCCAGCTCCACCTTCTCGACTTTAGGCAACCTGAAAAAGCATTGCTCCACGAAGCACGCGTTCAATATGAAGTCCAGGTCCGATACTCCTTCCAGCGAGCCCCAGAACAGTCCTCAGGAATGTCCCAAGCAGAACGAGCAGAGCGACTACGACAGTCAATCTTCTAGCGTGTCCGAGAGCCTAGACACTTCCTCAGTGACCGGAGTTCCTAAGTCAGCCTCTAACACATCGACCTCGACGACCGATACACCCAGATCCAGAAGACCTTCGCCCAGATCCTCGCCCGGACCCAGCGACGTTCCTTTCAAGTGTCACCTCTGCGACTGCGGCTTCGCGGAGCGACACGACTGCTTGGAGCACATCAGATTGAACCACAAAAGGTCCTTCGAGATGCTGGTGGCGAAAGGAGCGTTGGAGATGGATACTGCGCAgaagcagcagcagcagcagcagcagcagcaacagcagcagcaacagcagcaggCTCCGCCGCCGCAGCATCCGAGCGACGGAGAGGAGAAACGAGGTCGTTTCCCAGACTACAGCAATAGGAAGGTGGTCTGCGCCTTCTGCATGAGACGGTTCTGGTCCGCGGAGGATCTCCGCCGCCACATGAGAACGCACACCGGCGAGAGGCCCTTCTTCTGCGACATCTGCTGCCGGAGGTTCACCCTGAAACACAGCATGTTGAGACACAGGAAGAAGCACGAGTCTATTGATTCAGTTATGTACGTAGGAACTAGCGGAGACGAGGAGAACTCACCCACACAGCCTCCTACAATCGCTCCTCAAAATCAACAGCAACCTGCCCTGGTAGCAGCCAACTCGAGCGATCCCGTGGCCCAGGACGAGGCCTCATTGCCGACTGTAGCTACCGTTCCTACAGAGGAAGTGGCCAATCCCCAAAACTCGGAGCTCAACGAGAGTGATAACGATTTGATATCCAATCTTCTGGGGATCAGGGACAAGCATTTCATGGACAAGGTGATGCAAGCGACGCCTGACGATGCTGCTAAACTGTTAGGAGTGCAACACAGCCATGAGTGA
Protein Sequence: MILGSSEPCTADNVMFCLLPVTIIRIGFEVDISRLSHSSNERNVPRDKAEDARSLTVKSGPYQGQDNEVQADAASPSSSVELPESAHPCPACPTVLSSSRELTNHLRGHNSPRSGTDCSGEDDYCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHRSASPHSYTDSEGSSDSEKPPSKRRHIEEYNNNEIAKRNSPDFIDRQENSPTLGKRRCSGFLSDSDGQKRHKILLNSSRTEMKPRPDDTQNVYNCPVCGRQDFATSPLLEAHLERSHPDYPAKCDTCNLSFKNHRVLNLHRFMIHFAENSMGNTARNLRNSVVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGITNSQAKIADDKSRRDDFFAGLDLQNKAAMTEAKEGKDLADIQSIISVTSGPILQSFPRSDASTPENSVKFNPSVSSSGSSGTLSSEYHEEEAQDAFAAEFRKMKLKGEFPCRLCTAIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNDSVERSSPRVMKDEVRKNLVYPSERDDLQHQTQLQYPPVAMEGRGEIRIIEEAKLHNSAISMHNPYEKNDAFPRPGQPMELTHRNAEEAKADAKLEDDLESRSSDGSVSLVNETKSDSHQRIQASPMNLKKGLSENTEDGPLDLSMDVLDLSKKSKDKEDVDFAGAQEQFGKNHKDIYNATSQLLLTEAFLKAGQGSSQPTSLEALYANAHMLYRNFGTFSAGVGAGILPPYMFNPHVFGQDFTMKERLQKELVRGLQLTSGGTLVEPTIGAAGFTAFAQARDMNSQSANEQSEYAKLLSSKMANKALSGREKPENHIPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHSTLLQNLAQTAAQVSPSYQNILPKGDHSSNSEYSKHPISDQVKYAILAQQLKANKAEDNDSEEELVIDEDPQDKDTQESQKQKNKTTSLLRGQLESSEPVKEVLMKEENEETTKDAPESMNAESTSNENPTEEAKDSDSEKPMETEEGEDSEADQEMKTEPEEKSEKTEDGADLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSESDEKSDSVNSLNSVSTSTKKKRKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCIHCSLLFTTKSNCDRHLLRKHKANPNKMRRARNSSSPDSQAVISSNNSFPMRNVPERPYKCNQCPSSTFSTLGNLKKHCSTKHAFNMKSRSDTPSSEPQNSPQECPKQNEQSDYDSQSSSVSESLDTSSVTGVPKSASNTSTSTTDTPRSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIRLNHKRSFEMLVAKGALEMDTAQKQQQQQQQQQQQQQQQQAPPPQHPSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFFCDICCRRFTLKHSMLRHRKKHESIDSVMYVGTSGDEENSPTQPPTIAPQNQQQPALVAANSSDPVAQDEASLPTVATVPTEEVANPQNSELNESDNDLISNLLGIRDKHFMDKVMQATPDDAAKLLGVQHSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: -
80% Identity: -