Basic Information

Insect: Bombus muscorum
Gene Symbol: Rreb1
Assembly: GCA_963971185.1
Location: OZ020128.1:9036646-9042986[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00093 0.1 13.7 0.2 1 23 58 80 58 80 0.96

2 15 0.47 51 5.2 0.2 1 20 94 113 94 119 0.93

3 15 0.014 1.6 9.9 0.1 1 23 214 238 214 238 0.95

4 15 0.072 7.9 7.7 3.0 2 23 244 266 244 266 0.95

5 15 1.9 2.1e+02 3.3 0.6 1 19 322 340 322 342 0.89

6 15 0.53 59 5.0 0.1 1 23 455 477 455 477 0.96

7 15 2.8e-05 0.0031 18.4 0.3 1 23 486 508 486 508 0.98

8 15 0.0012 0.14 13.3 2.8 1 23 514 537 514 537 0.97

9 15 0.00046 0.05 14.6 3.0 1 23 922 945 922 945 0.97

10 15 0.00066 0.072 14.1 0.1 3 23 1218 1238 1216 1238 0.97

11 15 0.58 65 4.9 6.0 1 23 1244 1267 1244 1267 0.97

12 15 0.0041 0.45 11.6 2.2 1 23 1305 1329 1305 1329 0.97

13 15 6.4 7.1e+02 1.6 7.4 1 23 1413 1436 1413 1436 0.96

14 15 0.011 1.2 10.3 0.4 2 23 1487 1508 1486 1508 0.94

15 15 1.3 1.5e+02 3.7 8.2 1 23 1514 1536 1514 1536 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00093	0.1	13.7	0.2	1	23	58	80	58	80	0.96
2	15	0.47	51	5.2	0.2	1	20	94	113	94	119	0.93
3	15	0.014	1.6	9.9	0.1	1	23	214	238	214	238	0.95
4	15	0.072	7.9	7.7	3.0	2	23	244	266	244	266	0.95
5	15	1.9	2.1e+02	3.3	0.6	1	19	322	340	322	342	0.89
6	15	0.53	59	5.0	0.1	1	23	455	477	455	477	0.96
7	15	2.8e-05	0.0031	18.4	0.3	1	23	486	508	486	508	0.98
8	15	0.0012	0.14	13.3	2.8	1	23	514	537	514	537	0.97
9	15	0.00046	0.05	14.6	3.0	1	23	922	945	922	945	0.97
10	15	0.00066	0.072	14.1	0.1	3	23	1218	1238	1216	1238	0.97
11	15	0.58	65	4.9	6.0	1	23	1244	1267	1244	1267	0.97
12	15	0.0041	0.45	11.6	2.2	1	23	1305	1329	1305	1329	0.97
13	15	6.4	7.1e+02	1.6	7.4	1	23	1413	1436	1413	1436	0.96
14	15	0.011	1.2	10.3	0.4	2	23	1487	1508	1486	1508	0.94
15	15	1.3	1.5e+02	3.7	8.2	1	23	1514	1536	1514	1536	0.98

Sequence Information

Coding Sequence: ATGATATCGTTCTCGGAAGTTTGCTTCAACAGTAGCTTGCAGAATAGAAAAGACTTAGTAAATAAGGACGATTGTGTTACTGTTAAGAACGGACCCACACaggaaaatgaaaacgaaacACCAGCTGATGCTGCATCTTCACCATCTAGTGTTGAGCTACCAGAACGCGCACACCCATGTCCAGCTTGTCCAACCGTTTTGTCTACTTCCAAGGAGCTAACGAACCACTTACGTGGCCATAATTCGCCACGTAGCACAGACTGTAGCGTCGAGGATGACTATTCTTGCGGAGTTTGCATGAAAATACTCAGCTCCGCAAGCTCCCTTGACAGACATGTGCATTTAAGGACAGCGCACAGAGGCGCCTCTCCTAACAGCTGTACCGACTCCGAAGGTAGCAGCGACTCAGACAAATCATCCAGGCAGCGACATCTCGAGGAATATAACAACAACGAAATCACAAAAAGGAACTCGCCAAATATCGGGGACAGACGGAACGAGGAACAGACCTCGTCGTTAACTGGAAAAAGAAAGTGCCCTAACTATGCGAGCGACAGCGAAACACAGAAGAGGCATAAGATTCTTCTAAATAGTTCGAGAAGCGAGATAAAATCGAGACAGGATGACAACCAGAATATTTACAATTGTCCAGTATGCGGGCGACAAGATTTTGCCACTAGCGCCCTCTTAGAAACGCATCTGGAACGAAGTCATCCGGAATTCCCTGCAAAATGCGACACATGCAACTTGTCGTTCAAAAACCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTTGCAGAACACTCGATGGGAAATACGGCGAGAAATCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACATTCGTTGATTTCTCGTCCGATAAATTCCCAGCAATAGCGAGAGCTGTCTGCGAACAATCGCTTCACCGGCCAGCTTCCGGTGAGGTAGCAAAATTCCAATGCTCCAAATGTCTGCGAGCATTCCCTTGTAGATCCGCGTTGGATGCCCACGAAACTGACTGCGGCACGATGAATTTGCAAAGTAGAACAACTGACGATAGCCAATCGCGAAGAGATGATTTCTTTGCTGGTTTGGATCTTCAAAATAAGGCTGCTTTGAGGGAAGCGAAAGAAGGCAAAGATCTTGCCGATATCCAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAATTTTCGATCAGACACCAGTACACCCGAGAACAACATCAAATTTAATACCAGTGTAAATTCTTCTGGTAGTTCGAGTACGTATTGCGCAGAGTACCACGAGGAGGAAGCTCAAGACGCTTTTTCTGCGGAAttcagaaaaatgaaattgaaaggGGAGTTCCCTTGTAGGCTCTGTTCCTCGATATTTCCTAACTTAAGAGCCCTAAAAGGTCACAATAGGGCGCACATGGGCGTGGGACCTGGCATGCCGTATCCTTGTAATATGTGTCCTTATACCAGCACTGATAAAGCGACTCTGGTGAGGCATCTGAGGTCTCATAATGGCGACAGACCTTACGAATGCTCTCTTTGCAATTACGCTTTCACAACTAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACGAGAGAAGACATTAAGAGCGTTCTCATTTATCATCCAAATGAAGATTCTACGAACGAGAACGTGGAACGTGGAAACTCACCCAGAGTTTTGAAGGATGAAGCGAGGAAAAGCCTGGTATATCCGACAGAACGCGACGATCTTCACCAGGCGCAAATACACTATCCTCCGGTTTCTATGGAGGTCAGAGGTGAGATCAGAGGTGAGATCAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCGATGTCGATGTACAGCACTAGCCACTTTGAAAAAAATGATGCGTTTTCAAGGCATGGTCAGCCTTTGGAGCTGACCCAAAGGAACTCCGAGGAGACAAAACCTGGTCAAGATGCCAAATCGGATTATTCGAAGTTGGACGACGATTTAGAGTCGAGGTCATCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTAAAGAAAGGTCTCAACATATCGGAAAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTAGATCTCAGCAAGAAGTCGAAAGAAAAGGAGGACGATAACTTCGCCGCGGCTCACGAACAATTTGGAAATAACCAAAAAGATTTGTACAGTGCTACCAGCCAGTTATTGTTGACTGAGGCTTTGTTGAAGGCTGGCCAGGGTAGCTCTCAACCTACATCTCTGGAAGCTCTGTACGCTAACGCAATCTACAGAAATTTCAGTACATTCCCTGGTAGCGTAGGAGCTGGAATATTACCACCGTACATGTTCAATCATCATATCTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGTCTACAGTTGACAAGCGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCGCGGGATTTACCACCTTTTCTCAAAATAGAGACATGAATTCCCAGTCTCATTCAACAACCGACCAAAGTGAATATGCCAAATTAATATCTTCTAAGATGGCCAACAAGAGTCTGGCAAACCGCGATAAACCAGACAATCTGCCCTCGTCCAATTCTGTAAAGATGGTGATCAAAAATGGAGTCCTGATGCCGAAACAAAAGCAACGGAGGTACAGAACTGAGAGGCCTTTTACCTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCATATTAAACAGCAACATCCTCAGCACTGGAGCCAGCGACCCAGAGGAGGTCACTCGACAAGAGGAAGACCACCTTCCAGCCATCCTACGTTGATTCAAAACCTTGGTCAGGCAAGTTCTCAAGGCAGTCAATCATATAACAACATCCTGCCAAAAGCGGAACAGTCAACGAGTCCGGAATTTACGAGGCATTCTATCTCCGACCAAGTGAAGTACGCTATCCTGGCACAGCAATTAAAGGCAAACAAAATGGAAGACAATGACTCTGAAGAAGAACTGGTAATAGACGAAGGGCCCCAAGAGAAAGAAACTCAAGAATCTCAAGATCAAAGGGAGAAGAGTCTATTGCGAGGACAGTTAGAAGCTACAGATTCTACGAAAGAAATTGTAGTGAAAGAAGAAGTCATGGAATGTTCAAACGATGACCCAAACGAGACAAATGTTAAGCTGGAGAAGAACGAACAAATTGTTACTGAACAACAGCAAAAATCTGACACGGAAAGGGCTACTGAGATGGAAAATTCGATTGATAAAAATCCTGACAAAGTGCTCAAGCTGGAGAACAGCGTGAAGATAGAGGATGGAGCACCTGATCTCGCCAGCGTGTCAGAGTTGTTGGACAATGCCTCCCAACAATACCAGCAGTTTCAACCCCAATATTTAAGCGATGAAGAGGGTTTAGTAGCATCGAACAGTGATTGCAATAATTCTGGCAGTGATGAAAAATCTGATTCTGTAAATTCATCACATTCGACGAACgcatcaaaaaaaaaaaagaaaaagaagaaaaaaaagaagaaatcagCATATTCAATGGCCCCCAATAGAGTAATCTGTCCATACTGTGAAAGACCATTTCCATGGACCTCGTCTCTCAGACGACATATTTTGACACACACTGGGCAGAAACCTTATCAATGCGTTCACTGTTCCTTGCTATTTACAACGAAATCGAACTGCGACCGTCATTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTTAGAAACTCTTCCTCGCCAGATTCTCAAGCGATTATCAACAATAGTAATTCGTTCTCCATGAGAAACGTTCCTGAAAGACCCTACAAATGCAATCAATGTCCCAGCTCAACATTTTCAACGTTGGGTAACTTAAAGAAACATCGTTCCACTAAACACGCTCGAAAGATGAAGACCAGGTCGGAGACTCCATCCAGTGAACCTCAAACCAGCCCACAGGAGTGTCCAAAGCCGAATAACGAACAAACTGATTATGATAGTCAGTCTTCGAGCGTGTCTGAAGGGATAGAGACTTCTTCGATGCCAGGACTTAGCAAATCGAATTCTAGCGCTTCGCAATTGGCAAACGAAACAGCTAGATCGAGAAGACCTTCACCGAGATCATCACCTGGGCCCAGTGACGTTCCCTTTAAGTGCCACTTGTGCGATTGTGGTTTCGCAGAAAGACACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGATATGGACATCGACGCGGTTGAAGACCAACAACAACCGCCTCCACAACATCATACCAGCGacggagaagaaaaaaggggaCGTTTCCCAGACTATAGTAACAGGAAGGTTGTATGTGCATTTTGTATGAGGCGGTTCTGGTCTGCAGAGGATCTCCGGCGCCATATGAGAACACACACCGGAGAACGGCCTTTCTCCTGTGATATATGCTGCAGAAGATTCACCTTGAAACATAGTATGTTGCGGCACAGAAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAACTCGCCTGCACAGCCACCTACGATCACACCACGAAgtcagcagcaacaacaaatTCTGGTGGCAGCCAACAACGGAAATTCCCGTATTCAAGACAGAATCTCTTTACCGACTGTTACTCCAGTCGCGACCGGTGATGCAGCCCCGAGTGGATTAATAAGATTCAATCCGTACGAGAAATTAACCACTCTAACAGGAAAATTGGCCAGTATTCCATCAAACGCAAATCCAGATGCAGAGAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCAGCCAAGCTATTAGGAGTAAACCGTAGCCATGAGTGA
Protein Sequence: MISFSEVCFNSSLQNRKDLVNKDDCVTVKNGPTQENENETPADAASSPSSVELPERAHPCPACPTVLSTSKELTNHLRGHNSPRSTDCSVEDDYSCGVCMKILSSASSLDRHVHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDRRNEEQTSSLTGKRKCPNYASDSETQKRHKILLNSSRSEIKSRQDDNQNIYNCPVCGRQDFATSALLETHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSMGNTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQNFRSDTSTPENNIKFNTSVNSSGSSSTYCAEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEARKSLVYPTERDDLHQAQIHYPPVSMEVRGEIRGEIRIIEEAKLQNSSMSMYSTSHFEKNDAFSRHGQPLELTQRNSEETKPGQDAKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNISENIGEDGPLDLSMDVLDLSKKSKEKEDDNFAAAHEQFGNNQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFSTFPGSVGAGILPPYMFNHHIFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFTTFSQNRDMNSQSHSTTDQSEYAKLISSKMANKSLANRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQASSQGSQSYNNILPKAEQSTSPEFTRHSISDQVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKETQESQDQREKSLLRGQLEATDSTKEIVVKEEVMECSNDDPNETNVKLEKNEQIVTEQQQKSDTERATEMENSIDKNPDKVLKLENSVKIEDGAPDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAIINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSETPSSEPQTSPQECPKPNNEQTDYDSQSSSVSEGIETSSMPGLSKSNSSASQLANETARSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQQILVAANNGNSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVNRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: -
80% Identity: -