Nmel000596.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomia melanderi
Gene Symbol
RREB1
Assembly
GCA_003710045.1
Location
NW:747233-783730[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0082 0.5 10.0 0.2 1 23 37 59 37 59 0.96
2 16 0.00069 0.042 13.4 1.1 1 23 73 95 73 95 0.95
3 16 1.4e-07 8.4e-06 25.0 1.3 1 23 101 124 101 124 0.98
4 16 0.026 1.6 8.4 0.4 1 23 216 240 216 240 0.95
5 16 0.12 7.4 6.3 2.8 2 23 246 268 246 268 0.94
6 16 1.4 86 3.0 0.6 1 19 324 342 324 344 0.87
7 16 0.12 7 6.4 0.1 1 23 458 480 458 480 0.96
8 16 2.5e-05 0.0015 17.9 0.6 1 23 489 511 489 511 0.98
9 16 0.0016 0.096 12.3 3.2 1 23 517 540 517 540 0.97
10 16 0.00028 0.017 14.6 3.0 1 23 915 938 915 938 0.97
11 16 0.0004 0.024 14.2 0.1 3 23 1205 1225 1203 1225 0.97
12 16 0.35 21 4.9 6.0 1 23 1231 1254 1231 1254 0.97
13 16 0.0025 0.15 11.6 2.2 1 23 1293 1317 1293 1317 0.97
14 16 2.3 1.4e+02 2.3 5.4 1 23 1399 1422 1399 1422 0.90
15 16 0.0068 0.41 10.3 0.4 2 23 1473 1494 1472 1494 0.94
16 16 0.8 49 3.8 8.2 1 23 1500 1522 1500 1522 0.98

Sequence Information

Coding Sequence
ATGGATTACTCGAAAGTTACACTTAAGAGCGGACACGACCACGGACTCAACGAGGCTCAAGCTGATGTAGCATCGCCGCCATCTAGCGTTGAGTTAACAGAGAACACGCATCCCTGCCCGGCGTGTCCTACGGTCCTGCAGAGCTCCAGGGACCTGACGAACCACCTGCGCGGCCACAACTCGCCCCGCAGCACGGACTGCAGCGGCGAAGAGGACCACTGCTGCGGCGTGTGCAACAAGGTGCTGAGCTCGGCAAGTTCGCTCGACAGGCACGTGCTGGTACACTCTGGCGAGCGGCcgtttaaatgtaaatactgCGACATGGCGTTCACGACGAACGGCAACATGAACCGGCACCTGAGGACCGCGCACCGGTCCACCTCGCCGCAGAGCTACACGGACTCCGAGAGCAGCAACACAGACTCGGAGAGGCCACCGAAGAGGCGGCACATCGAAGAGTTCAACAACAACGAGGTCGCGAAAGGGAACTCCCCGGACTACATCGACCGCCAAGAGAAGCCCGGCAACCTGAAGCGCAAGAGCTCGGACTGCCTGGCCGACAGCGACGGCCACAAGAGGCACAAGATCCTCTTGAACAACTCGCGCGCTGAGATCAGAGCCAGGCCGGACGAAAACCAGAACGCGTACAACTGCCAGGTATGCGGCAGGCAGGATTTCGCGACCAGCGCGCTCCTCGAGGCGCACCTGGAGCGCTGCCACCCCGAGTTCCCGGCGAAATGCGAGTCCTGCAACCTGTCCTTCAAGAACCACCGGGTGCTGAacctgcacaggttcatgatCCACTTCGCGGACCACTCGACCGGGAACACCGCGAGGAACCTGCGCAACTCGGTGGTCGGGTTCAACGATCTGACGTTCGTCGACTTCTCGTCGGACAAGTTCCCGGCGATCGCGAGGGCGGTCTGCGAGCAATCCCTCCACCGTCCGGCGTCCGGGGAGGTAGCCAAGTTCCAGTGCTCCAAGTGTCTGCGAGCGTTCCCGTGCAGATCGGCGTTGGACTCGCACGAGATCGACTGCGGCACCAACATCGCGCAGACTAGGGTGACCGACGACAGCCAGTCGAGGAGGGACGACTTCTTCGCTGGCCTCGACCTGCAGAACAAGTCCGCGCTGACGGAGGCGAAAGAGGGCAAGGACCTGGCCGACATTCAGAGCATCATCTCGGTCACGTCCGGCCCGATCCTGCAGAACTTCCCCAGGTCGGACGCGAGCACGCCCGAGAGCGCCATCAAGTTCAGCCAGAGGGCGAGCTCCTCGGGATCGTCGGGCACCGCGTCCTCCGAGTATCACGAGGAGGAAGCCCAAGACGCGTTCGCCGCGGAGTTCCGCAAGATGAAGCTGAAGGGCGAGTTCCCGTGTCGGCTGTGCACCGCGATATTCCCGAACCTGCGGGCGCTGAAGGGGCACAACAGGGCGCACATGGGCGTCGCCCCCGGGATGCCGTATCCCTGCAACATGTGTCCGTACACGAGCACGGACAAGAACACGCTGGTGAGACACCTGAGGTCGCACAACGGGGACCGTCCGTACGAGTGCTCGCTGTGCAAGTACGCGTTCACCACGAAGGCGAACTGCGAGCGGCACGTTCGGAACAGGCACGGCAAGCTGACCAGGGAGGACATCAAGAGCGTGCTGATCTACCACCCGAACGAGGACTCGACGGCCGAGAGCGTGGAGAGGAGTTCGTCGCGGGTGACGAAAGACGACGCGAGGAAGACCCTGGTCTACCCGGCCGACCGCGACGAGTTGCAGCACCAGGCGCAGGTGCACTACCCCTCGGCGCCGATGGAGGGCCGCGGGGAGATCAGAATAATCGAGGAGGCGAAGCTCCACGGCGCGTTGTCCATGTGCTACGAGGCGGGCGACGCGTTCGGGAGACCCGGCCAGGCGATGGAGCTGGCGCAGCGGAGCGCGGACGACGGGAAGTCCGCGACGGACGCCAGGCTGGACTACGCGAAGATAGAGGAGGACGTAGAGTCCAGGTCGTCGGAGGGTAGCGTGTCTCTAGTCAATGATGCCAAATCAGACTCGCACCAAAGAATTCAGGCTAGTCCGATGAACCTGAAGAAGAGTTCAGCGTCCGAGGGGGCCGGTGAGGACGGGCCCCTGGACTTGTCGATGGACGTCCTGGACCTTAGCAAGAAGTCCAAGGAGAAGGAGGACGGTGAGTACCTAGCCGGCCAGGAGCAGTACGGGAAGAGCCAGAAGGACCTGTACAGCGCCACCAGCCAGCTGTTGCTCACCGAGGCTCTGTTAAAGGCTGGACAGAGCAGCTCCCAGCCCACGTCGCTGGAGGCGTTGTACGCCAACGCCCACTTGATCTACAGGAACTTCGGGTCGTTCCCTGGCGGCGTCGGGGCTGGGATACTGCCGCCATACTTGTTCAATCCCCACATGTTTGGACAAGATTTCTCGATGAAGGACAGGCTCCAGAAGGAGCTGGTCAGGGGTCTGCAGCTGACCAGCGGGGGCACCCTCGTGGAGCCGCCGATCAGCGCCGGCGGGTTCAACGCGTACCCGCACGGCAGAGACATGGGCGCGCAGTCGGCGAGCGAGCAGGCCGACTACGCGAAGCTGATCTCGTCGAAGCTGGCGAGCAAGCCGGTCGTGAGCCGGGACAAGCCCGAGGGTACGTCTTCGTCGAACTCGGTGAAGATGGTGATCAAGAACGGGGTGCTGATGCCGAAGCAGAAGCAGAGACGGTACAGGACCGAGAGGCCGTTCACCTGCGAGCACTGCTCCGCCAGGTTCACGCTGCGCAGCAACATGGAGAGGCACATCAAGCAACAGCACCCGCAGCACTGGAGCCAGAGACCCAGGGGCGGCCACTCGACCAGGGGCAGGCCACCCGCGAGTCACCCGACGCTGCTGCAGAACCTGACGCAACCCGCGTCCCAAGCGGCGCAGACGTACCCGAGCATACTGCCGAAGACGGAGCAGTCGAGCGAGTACACGGCGAAACACCCGATATCGGACCAGGTGAAGTACGCGATCCTGGCGCAGCAGCTGAAGGCCAACAAGGCCGAGGACAACGACTCCGAGGAGGAGCTGGTGATCGACGAGGATCCGCAGGACAAGGATCAGGATCCTCAGAAAGAGAAGACCACCAGTCTGCTCAGGGGTCAGCTGGAGGCTGCGGACCCGGTCGCGGAGGCCGGCAAGCCGGAGGCTGAAGAGGCTAAGGGCGACTCCACGAACACCGAGTCGGCGAACAGCGAGAACGCCAGCGACGAGGCTAAGCTGTCCGAATCGGAGCAGCCGACGGAGGCCAGCGAGGCCGGCGACGACGCGAAGACGCTGGCCAAAGCGGAGCCCGCCGAGGACAAGACGGAGAAGATGGAGGACGGCGCGACCGACTTGGCCAGCGTCTCGAAGCTGCTGGACAACGCGTCGCAGCAGTACCAGCAGTTCCAGCCGCAGTACCTCAGCGACGAGGAGGGCTTGGTGGCGTCCAACAGCGACTGCAACAACTCGGGCAGCGACGAGAAGTCGGACTCCGTGAACTCGGTGAACTCGGTCAGCAGTCCGTCGAAGAAGAAgcgcaagaagaagaagaagtccGCGTACTCGATGGCGCCGAACCGAGTGATCTGCCCGTACTGCGAGAGGCCGTTCCCGTGGACGTCCTCCCTGAGGAGGCACATCCTCACGCACACCGGCCAGAAGCCGTACCAGTGCGTCCACTGCTCGCTGCTGTTCACCACCAAGTCGAACTGCGACCGCCACCTGCTGAGGAAGCACAAGGCGAACCCGAACAAGGTGCGCAGGGTTCGCAACTCGTCGTCGCCGGACAGCCAGCCCGTGACGGGCGGCAGCAACAACTCGTTCTCGATGAGGAACGTACCCGAGCGGCCCTACAAGTGCAATCAGTGCCCCAGCTCGACCTTCTCCACGCTGGGCAACCTGAAGAAGCACCGCTCGACGAAGCACCCGCGCAAGGCGAAGTCGAGGCCAGACTCTCCGTCCAGCGAGCCGCAGAACAGCCCTCAGGAGTGCTCGAAGCAGAACGAGCAGACCGACTACGACAGCCAGTCGTCGAGCATCTCCGAGGGCATCGAGGCGACGATGCCCGCGCTGGCCAAGACCACGCCCAACACCTCGTCGTCCGCCAATGACACGTCCAGGTCTAGACGGCTGTCGCCGAGGTCGTCGCCGGGGCCCAGCGACGTGCCGTTCAAGTGTCATCTCTGCGACTGCGGATTCTCCGAGCGGCAGGAATGCCTGGAGCACATCAAGGCGAACCACAAGAGGTCCTACGAGATGCTGGTGGCCAAGGGCGCGTTGGATATGGACATCGATGCTGTGGAGGACCAGCAGCAGCCGCCACCGTCGCAGAATCCCAGCGACGGCGAAGAGAAGAGAGGACGCTTCCCTGACTACAGTAACAGAAAGGTGGTCTGTGCTTTCTGCATGAGGAGATTCTGGTCTGCAGAGGACCTGCGCCGGCACATGAGAACGCACACCGGCGAGCGGCCGTTCTCCTGCGACATCTGCTGCAGAAGGTTCACGCTGAAGCACAGCATGCTTCGGCACAGGAAGAAGCACGAGTCGGTCGACTCCACCATGTACGTAGGTACCAGCGGCGACGAGGAAAACTCGCCTATCCAACCGCCCACCATAACCCCAAGAAGCCAACAGCAACCGCCCGTTCTAGTGGCGGCGAACTCTGGGAACCTGAGGGCGCAGGACAGGATCTCGCTGCCGACCGTCGCCCCGGTCGCAACAGGAGACGCTGGTCCCGGCGGTCTGATGAGGTTCAACCCCTACGAGAAGCTGACGACCTTGACCGGAAAGCTCGCCAGCATCCCGCAGAACGTGAACCCCGAGACCAGTGAGAGCGCCGACAACGACCTGATCTCGAACCTCCTCGGGATAAGGGACAAGAATTTCATCGACCGCGTGCTCCAGGCGTCCGCCGACGACGCGGCGAAGCTTCTCGGAGTGAAACGCAGCCACGAGTAA
Protein Sequence
MDYSKVTLKSGHDHGLNEAQADVASPPSSVELTENTHPCPACPTVLQSSRDLTNHLRGHNSPRSTDCSGEEDHCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCDMAFTTNGNMNRHLRTAHRSTSPQSYTDSESSNTDSERPPKRRHIEEFNNNEVAKGNSPDYIDRQEKPGNLKRKSSDCLADSDGHKRHKILLNNSRAEIRARPDENQNAYNCQVCGRQDFATSALLEAHLERCHPEFPAKCESCNLSFKNHRVLNLHRFMIHFADHSTGNTARNLRNSVVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDSHEIDCGTNIAQTRVTDDSQSRRDDFFAGLDLQNKSALTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPESAIKFSQRASSSGSSGTASSEYHEEEAQDAFAAEFRKMKLKGEFPCRLCTAIFPNLRALKGHNRAHMGVAPGMPYPCNMCPYTSTDKNTLVRHLRSHNGDRPYECSLCKYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTAESVERSSSRVTKDDARKTLVYPADRDELQHQAQVHYPSAPMEGRGEIRIIEEAKLHGALSMCYEAGDAFGRPGQAMELAQRSADDGKSATDARLDYAKIEEDVESRSSEGSVSLVNDAKSDSHQRIQASPMNLKKSSASEGAGEDGPLDLSMDVLDLSKKSKEKEDGEYLAGQEQYGKSQKDLYSATSQLLLTEALLKAGQSSSQPTSLEALYANAHLIYRNFGSFPGGVGAGILPPYLFNPHMFGQDFSMKDRLQKELVRGLQLTSGGTLVEPPISAGGFNAYPHGRDMGAQSASEQADYAKLISSKLASKPVVSRDKPEGTSSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPASHPTLLQNLTQPASQAAQTYPSILPKTEQSSEYTAKHPISDQVKYAILAQQLKANKAEDNDSEEELVIDEDPQDKDQDPQKEKTTSLLRGQLEAADPVAEAGKPEAEEAKGDSTNTESANSENASDEAKLSESEQPTEASEAGDDAKTLAKAEPAEDKTEKMEDGATDLASVSKLLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSVNSVSSPSKKKRKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKVRRVRNSSSPDSQPVTGGSNNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHPRKAKSRPDSPSSEPQNSPQECSKQNEQTDYDSQSSSISEGIEATMPALAKTTPNTSSSANDTSRSRRLSPRSSPGPSDVPFKCHLCDCGFSERQECLEHIKANHKRSYEMLVAKGALDMDIDAVEDQQQPPPSQNPSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESVDSTMYVGTSGDEENSPIQPPTITPRSQQQPPVLVAANSGNLRAQDRISLPTVAPVATGDAGPGGLMRFNPYEKLTTLTGKLASIPQNVNPETSESADNDLISNLLGIRDKNFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00625690;
90% Identity
-
80% Identity
-