Basic Information

Insect: Bombus dahlbomii
Gene Symbol: Rreb1
Assembly: GCA_037178635.1
Location: CM074103.1:10583662-10589891[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0039 0.36 11.7 0.1 1 23 58 80 58 80 0.96

2 16 0.00033 0.031 15.1 0.4 1 23 94 116 94 116 0.97

3 16 8e-07 7.4e-05 23.3 1.2 1 23 122 145 122 145 0.98

4 16 0.015 1.4 9.9 0.1 1 23 240 264 240 264 0.95

5 16 0.072 6.7 7.7 3.0 2 23 270 292 270 292 0.95

6 16 1.9 1.7e+02 3.2 0.6 1 19 348 366 348 368 0.89

7 16 0.53 50 5.0 0.1 1 23 481 503 481 503 0.96

8 16 2.8e-05 0.0026 18.4 0.3 1 23 512 534 512 534 0.98

9 16 0.0012 0.12 13.2 2.8 1 23 540 563 540 563 0.97

10 16 0.00046 0.043 14.6 3.0 1 23 945 968 945 968 0.97

11 16 0.00066 0.061 14.1 0.1 3 23 1246 1266 1244 1266 0.97

12 16 0.59 55 4.8 6.0 1 23 1272 1295 1272 1295 0.97

13 16 0.0041 0.38 11.6 2.2 1 23 1333 1357 1333 1357 0.97

14 16 6.4 6e+02 1.6 7.4 1 23 1441 1464 1441 1464 0.96

15 16 0.011 1 10.2 0.4 2 23 1515 1536 1514 1536 0.94

16 16 1.3 1.2e+02 3.7 8.2 1 23 1542 1564 1542 1564 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0039	0.36	11.7	0.1	1	23	58	80	58	80	0.96
2	16	0.00033	0.031	15.1	0.4	1	23	94	116	94	116	0.97
3	16	8e-07	7.4e-05	23.3	1.2	1	23	122	145	122	145	0.98
4	16	0.015	1.4	9.9	0.1	1	23	240	264	240	264	0.95
5	16	0.072	6.7	7.7	3.0	2	23	270	292	270	292	0.95
6	16	1.9	1.7e+02	3.2	0.6	1	19	348	366	348	368	0.89
7	16	0.53	50	5.0	0.1	1	23	481	503	481	503	0.96
8	16	2.8e-05	0.0026	18.4	0.3	1	23	512	534	512	534	0.98
9	16	0.0012	0.12	13.2	2.8	1	23	540	563	540	563	0.97
10	16	0.00046	0.043	14.6	3.0	1	23	945	968	945	968	0.97
11	16	0.00066	0.061	14.1	0.1	3	23	1246	1266	1244	1266	0.97
12	16	0.59	55	4.8	6.0	1	23	1272	1295	1272	1295	0.97
13	16	0.0041	0.38	11.6	2.2	1	23	1333	1357	1333	1357	0.97
14	16	6.4	6e+02	1.6	7.4	1	23	1441	1464	1441	1464	0.96
15	16	0.011	1	10.2	0.4	2	23	1515	1536	1514	1536	0.94
16	16	1.3	1.2e+02	3.7	8.2	1	23	1542	1564	1542	1564	0.98

Sequence Information

Coding Sequence: ATGATATCGTTCTCGGAAGTTTGCTCCAACGGTAGCTTGCAGAATAGAAAAGACTTAGTAAATAAGAACGATTGTGTTACTGTTAAGAACGGACCCACCCAGGAAAATGAGAACGAAACACCAGCTGATGCTGCGTCCTCACCATCTAGTGTTGAACTACCAGAAAGCGCACACCCATGTCCAGCTTGTCCGACCGTTTTGCCCACCTCCAGGGAGTTAACGAACCACCTACGCGGCCATAATTCGCCTCGCAGCACAGACTGTAGCGGCGAGGATGACTATTGCTGCGGCGTGTGCAATAAAGTGCTGAGCTCTGCAAGTTCCCTCGACAGACATGTGTTGGTGCACTCCGGGGAACGGCCGTTCAAATGCAAGTACTGTGAGATGGCGTTCACCACGAACGGCAATATGAACAGGCATTTGAGGACAGCGCACAGAGGCGCCTCGCCTAACAGCTGCACCGATTCCGAGGGTAGCAGCGACTCGGACAAATCATCCAGACAGCGACATCTCGAGGAATACAACAACAACGAGATCACAAAAAGAAACTCGCCAAATATAGGGGACAGACGGGACGAGGAACAGACCTCGTCGTTAACTGGAAAGAGAAAATGCCCTAATTATGCGAGCGACGGCGAAACACAGAAGAGGCACAAGATTCTTCTAAATAGTTCGAGAAGCGAGATGAAATCGAGACCGGACGACAACCAGAACATTTACAATTGTCCAGTATGCGGGCGACAGGATTTTGCCACTAGCGCCCTCTTAGAAACGCATCTGGAACGAAGTCATCCGGAATTCCCTGCAAAATGCGACACGTGCAACTTGTCGTTCAAAAATCACAGAGTACTGAATCTGCATCGATTCATGATACATTTCGCGGAACACTCGATGGAAAATACCGCGAGAAATCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTCTCGTCCGATAAGTTCCCAGCAATAGCGAGAGCTGTCTGCGAACAATCGCTTCATCGGCCAGCTTCTGGCGAGGTAGCAAAATTCCAATGCTCCAAATGTCTGCGAGCATTCCCTTGTAGATCCGCGTTGGACGCCCACGAAACTGACTGCGGCACGATGAATCTGCAAAGCAGAACAACCGACGATAGCCAATCGAGAAGAGACGATTTCTTCGCTGGCTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAAGAAGGCAAAGATCTTGCCGATATCCAGAGCATCATATCTGTCACCTCTGGACCTATCTTACAGAATTTTCGATCAGACACCAGCACACCCGAGAACAACGTCAAATTTAATACCAGCGTAAACTCTTCTGGTAGTTCAAGTACGTATTGCGCAGAGTACCACGAGGAAGAAGCTCAAGACGCGTTTTCTGCGGAGttcagaaaaatgaaattgaaaggGGAGTTCCCTTGCAGGCTCTGTTCCTCGATATTTCCTAATCTAAGAGCCCTAAAAGGTCACAATAGGGCGCACATGGGCGTGGGACCTGGCATGCCATACCCTTGTAATATGTGCCCTTATACCAGCACTGATAAAGCGACTCTGGTGAGGCATCTGAGGTCTCACAATGGCGACAGACCGTACGAATGCTCTCTCTGCAATTACGCTTTCACAACTAAAGCAAATTGCGAGCGCCATGTACGAAACCGACATGGAAAATTGACGAGAGAAGACATTAAGAGCGTTCTCATTTATCATCCGAATGAAGATTCTACGAACGAGAACGTGGAACGTGGAAACTCACCCAGAGTTTTGAAGGACGAAGTGAGGAAGAGCCTGGTATATCCGCCAGAACGCGACGATCTTCACCACCAGGCGCAAATACATTATCCTCCGGTTTCTATGGAGGTAAGAGGTGAGATCAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCGATGTCGATATACAGCACTAGCCACTTCGAAAAAAATGATGCGTTTTTAAGGCATGGTCAGCCTTTGGAGCTGACCCAAAGGAACTCCGAGGAGACAAAACCTGGTCAAGATGCCAAATCGGATTATTCGAAGTTGGACGACGATTTGGAGTCGAGATCGTCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTAAAGAAAGGTCTCAACATAACGGAAAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTGGATCTCAGCAAGAAGTCGAAGGAGAAGGATGACGATAACTTCGCCGCGGCTCACGAACAATTTGGAAATAACCAAAAAGATTTGTACAGTGCTACCAGTCAGTTATTGTTGACCGAGGCTTTGTTGAAGGCTGGCCAGGGTAGCTCTCAACCTACATCGCTGGAAGCTCTGTACGCTAACGCGATCTACAGAAACTTCAGTACATTCCCTGGTAGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAATCCTCATGTCTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGTCTACAGTTGACAAGCGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCGCGGGATTTACCACCTTTTCTCAAAACAGAGACATGAATTCCCAGTCTCATTCAACAACCGACCAAAGTGAATATGCCaaattaatatcttctaaGATGGCCAACAAGAGTCTGGCAAACCGCGATAAACCAGACAATCTGCCCTCGTCCAATTCTGTAAAGATGGTGATCAAAAATGGAGTCCTGATGCCTAAACAAAAGCAACGAAGGTACAGAACTGAGAGGCCTTTTACCTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAACAACATCCTCAGCACTGGAGCCAGCGACCCAGAGGAGGTCACTCGACAAGGGGAAGACCACCATCCAGCCATCCTACGCTGATTCAAAACCTTGGACAGGCAACTTCTCAGGGCAGTCAATCGTACAACAACATCCTGCCAAAAGTGGAACAGTCAACGAATCCGGAATTCACGAGGCATTCTATCTCCGACCAAGTGAAGTACGCTATCCTGGCACAGCAATTAAAGGCAAACAAAATGGAAGACAATGACTCTGAAGAAGAACTGGTGATAGACGAAGGGCCccaggaaaaagaaaatcaagaaTCTCAGGATCAAAGGGAGAAGAGTCTATTGCGAGGACAATTAGAAGCTACAGAATCTACGAAAGAAACTGTAGTGAAAGAAGAAGCCATGGAATGTTCAAACGATGACCAAAACGAGACGAATGTTGAGCTGGAGAAGAACGAACAAACTGTTACTGAACAACAGAAAAAATCTGACACGGAGAAGGCTACTACTGTGACGGAAAATTCGGTTGACAAGAATCTTGACAGAGTGCTCAAAACGGAATCAGTCAATATGAACAGCGAGAAGATGGAGGATGGAGCACCTGATCTCGCTAGCGTGTCAGAACTATTGGACAATGCCTCCCAACAATATCAACAGTTTCAGCCCCAATATTTAAGCGATGAAGAAGGTTTAGTAGCATCGAACAGTGATTGCAATAATTCTGGCAGCGATGAAAAATCCGACTCCGTGAATTCATCACATTCGACGAACGcatcaaagaaaaagaagaaaaagaagaaaaaaaagaagaaatcagCATATTCGATGGCCCCCAATAGAGTAATTTGTCCATACTGTGAGAGGCCATTTCCATGGACCTCGTCTCTCAGACGGCATATTTTGACACACACTGGACAGAAACCTTACCAATGCGTTCACTGTTCGTTGCTATTCACAACGAAATCCAACTGCGACCGTCATTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTTAGAAACTCTTCTTCTCCAGATTCTCAAGCGGTAATCAACAATAGTAACTCGTTCTCCATGAGGAACGTTCCTGAAAGACCCTACAAGTGCAATCAATGTCCCAGCTCGACATTCTCAACGTTGGGTAACCTAAAGAAACATCGTTCCACTAAACACGCTCGGAAGATGAAGACCAGGTCGGAGACTCCATTCAGTGAACCTCAAACCAGCCCACAGGAGTGTCCAAAGCCGAATAACGAACAAACTGATTATGATAGTCAGTCTTCGAGCGTGTCTGAAGGGATAGAAACTTCCTCGATGCCAGGACTTACCAAATCGAATTCTAGCGCTTCACAATTGGCCAACGAAACAACTAGGTCAAGGAGACCTTCACCGAGATCATCACCTGGGCCCAGTGATGTTCCCTTTAAGTGTCACTTGTGCGACTGTGGTTTCGCAGAACGACACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGACATGGACATCGACGCGGTTGAAGACCAGCAACAACCGCCGCCACAACATCATACCAGCGACGGAGAAGAAAAACGGGGACGTTTTCCAGACTATAGTAACAGGAAGGTTGTATGTGCATTCTGTATGAGGCGGTTCTGGTCTGCAGAGGATCTCCGGCGTCATATGAGAACACACACCGGAGAACGACCTTTCTCCTGCGATATATGCTGCAGAAGATTCACCTTGAAACATAGTATGCTGCGGCACAGAAAGAAACACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAGAACTCACCTGCACAGCCACCTACGATCACACCACGAAGTCAACAGCAGCAACAAATTTTGGTGACAGCCAACAACGGAAATTCCCGTATTCAAGATAGAATCTCTTTACCAACTGTTACTCCAGTCGCGACCGGTGATGCAGCTCCGAGTGGATTAATAAGATTCAATCCGTATGAGAAATTAACCACTCTAACAGGAAAATTGGCCAGTATTCCATCAAACGCAAATCCAGATGCAGAGAACACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTGCTACAGGCATCCGCTGATGACGCCGCCAAGCTATTAGGAGTAAAGCGTAGCCATGAGTGA
Protein Sequence: MISFSEVCSNGSLQNRKDLVNKNDCVTVKNGPTQENENETPADAASSPSSVELPESAHPCPACPTVLPTSRELTNHLRGHNSPRSTDCSGEDDYCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDRRDEEQTSSLTGKRKCPNYASDGETQKRHKILLNSSRSEMKSRPDDNQNIYNCPVCGRQDFATSALLETHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSMENTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQNFRSDTSTPENNVKFNTSVNSSGSSSTYCAEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEVRKSLVYPPERDDLHHQAQIHYPPVSMEVRGEIRIIEEAKLQNSSMSIYSTSHFEKNDAFLRHGQPLELTQRNSEETKPGQDAKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNITENIGEDGPLDLSMDVLDLSKKSKEKDDDNFAAAHEQFGNNQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFSTFPGSVGAGILPPYMFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFTTFSQNRDMNSQSHSTTDQSEYAKLISSKMANKSLANRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGSQSYNNILPKVEQSTNPEFTRHSISDQVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKENQESQDQREKSLLRGQLEATESTKETVVKEEAMECSNDDQNETNVELEKNEQTVTEQQKKSDTEKATTVTENSVDKNLDRVLKTESVNMNSEKMEDGAPDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSETPFSEPQTSPQECPKPNNEQTDYDSQSSSVSEGIETSSMPGLTKSNSSASQLANETTRSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQQILVTANNGNSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAENTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00214579;
80% Identity: -