Basic Information

Insect: Bombus skorikovi
Gene Symbol: Rreb1
Assembly: GCA_014737355.1
Location: JACXIH010000009.1:247099-254110[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.007 0.64 10.7 0.2 1 23 40 62 40 62 0.96

2 15 0.006 0.55 10.9 1.2 1 20 76 95 76 101 0.93

3 15 0.012 1.2 9.9 0.1 1 23 197 221 197 221 0.95

4 15 0.062 5.7 7.7 3.0 2 23 227 249 227 249 0.95

5 15 1.6 1.5e+02 3.3 0.6 1 19 305 323 305 325 0.89

6 15 0.46 42 5.0 0.1 1 23 438 460 438 460 0.96

7 15 2.4e-05 0.0023 18.4 0.3 1 23 469 491 469 491 0.98

8 15 0.0011 0.098 13.3 2.8 1 23 497 520 497 520 0.97

9 15 0.00039 0.036 14.6 3.0 1 23 904 927 904 927 0.97

10 15 0.00056 0.052 14.2 0.1 3 23 1204 1224 1202 1224 0.97

11 15 0.5 46 4.9 6.0 1 23 1230 1253 1230 1253 0.97

12 15 0.0035 0.33 11.6 2.2 1 23 1291 1315 1291 1315 0.97

13 15 5.5 5.1e+02 1.6 7.4 1 23 1399 1422 1399 1422 0.96

14 15 0.0096 0.89 10.3 0.4 2 23 1473 1494 1472 1494 0.94

15 15 1.1 1.1e+02 3.8 8.2 1 23 1500 1522 1500 1522 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.007	0.64	10.7	0.2	1	23	40	62	40	62	0.96
2	15	0.006	0.55	10.9	1.2	1	20	76	95	76	101	0.93
3	15	0.012	1.2	9.9	0.1	1	23	197	221	197	221	0.95
4	15	0.062	5.7	7.7	3.0	2	23	227	249	227	249	0.95
5	15	1.6	1.5e+02	3.3	0.6	1	19	305	323	305	325	0.89
6	15	0.46	42	5.0	0.1	1	23	438	460	438	460	0.96
7	15	2.4e-05	0.0023	18.4	0.3	1	23	469	491	469	491	0.98
8	15	0.0011	0.098	13.3	2.8	1	23	497	520	497	520	0.97
9	15	0.00039	0.036	14.6	3.0	1	23	904	927	904	927	0.97
10	15	0.00056	0.052	14.2	0.1	3	23	1204	1224	1202	1224	0.97
11	15	0.5	46	4.9	6.0	1	23	1230	1253	1230	1253	0.97
12	15	0.0035	0.33	11.6	2.2	1	23	1291	1315	1291	1315	0.97
13	15	5.5	5.1e+02	1.6	7.4	1	23	1399	1422	1399	1422	0.96
14	15	0.0096	0.89	10.3	0.4	2	23	1473	1494	1472	1494	0.94
15	15	1.1	1.1e+02	3.8	8.2	1	23	1500	1522	1500	1522	0.98

Sequence Information

Coding Sequence: ATGGACGACGCGCAACGCTGTCTTACTGTTAAGAACGGACCCACCCAGGAAAATGAGAACGAAACACCAGCTGACGCTGCATCCTCACCATCTAGCGTTGAACTACCAGAAAGCGCACACCCATGTCCAGCTTGTTCCACCGTTTTGCCCACCTCCAGGGAGTTAACGAACCACCTACGCGGCCATAATTCGCCTCGCAGCACAGACTGTAGCGGCGAGGATGACTATTGCTGCGGCGTGTGCAACAAGGTGCTGAGCTCTGCGAGTTCCCTCGACAGACACGTGCATTTGAGGACAGCGCACAGAGGCGCCTCGCCCAACAGCTGCACCGACTCCGAGGGTAGCAGCGACTCGGACAAATCATCCAGACAGCAGCGACATCTCGAGGAATACAACAACAACGAGATCACGAAAAGAAACTCGCCAAATATCGGGGACAAACGGGACGAGGAACAGACCTCGTCGTTAACCGGAAAGAGAAAGTGCCCCAACTACGCGAGCGACAGCGAAACACAGAAGAGGCACAAGATTCTTCTAAATAGTTCGAGAAGCGAGATGAAATCAAGACCGGACGACAACCAGAACATTTACAATTGTCCGGTATGCGGGCGGCAGGATTTTGCCACTAGCGCCCTCTTAGAAACGCATCTGGAACGAAGTCATCCGGAATTCCCTGCGAAATGCGACACGTGCAACTTGTCGTTCAAAAATCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTCGCGGAACACTCGATGGGAAATACCGCGAGAAATCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTCTCGTCCGATAAGTTCCCAGCAATAGCGAGAGCTGTCTGCGAACAATCGCTTCATCGGCCAGCATCTGGCGAGCTAACCAAATTCCAATGTTCCAAGTGTCTGCGAGCATTCCCTTGCAGATCCGCGTTGGACGCCCACGAAACTGACTGCGGCACCACGAATTTGCAAAGCAGAACAACCGACGATAGCCAATCGAGAAGAGACGATTTCTTCGCCGGCTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAGGAAGGCAAAGATCTTGCCGATATCCAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAGTTTTCGATCGGACGCCAGTACACCCGAGAACAACGTCAAATTTAATAACAGCGTAAACTCTTCTGGCAGTTCGAGTACGTATTGCGCGGAGTACCACGAGGAGGAAGCTCAAGACGCGTTTTCCGCTGAATTCAGAAAAATGAAATTGAAAGGGGAGTTCCCTTGCAGGCTCTGTTCCTCCATATTTCCTAATCTAAGAGCGCTGAAAGGTCACAACAGGGCGCACATGGGCGTGGCACCTGGCATGCCGTATCCTTGTAATATGTGCCCTTATACCAGCACCGATAAAGCCACTCTGGTCAGGCATCTGAGGTCTCACAATGGCGACAGACCTTACGAATGCTCTCTCTGCAATTACGCTTTCACGACCAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGAGAAGATATTAAGAGCGTTCTCATTTATCATCCAAACGAAGATTCTACGAACGAGAACGTGGAACGTGGCAACTCACCCAGAGTTTTGAAGGATGAAGCGAGAAAGAGCCTGGTATATCCGCCAGAACGCGAAGATCTTCACCACCAGGCGCAAATACATTATCCTTCGGTTTCTATGGAGGTAAGAGGCGGCGAGATCAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCCATGTCGATATACAGCACCAGCCACTTTGAAAAAAATGATGCGTTTTCAAGGCATGGTCAGCCTTTGGAGTTGACCCAAAGGAACTGCGAGGAGACGAAACCTGGTCAAGATGCCAAATCGGATTATTCCAAGTTGGACGACGATTTGGAGTCGAGGTCGTCCGAGGGTAGCGTATCTCTTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTAAAGAAAGGTCTCGACATATCGGATAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTGGATCTCAGCAAGAAGTCGAAGGAGAAGGAGGACAATAACATGGCCGCGGCTCACGAACAATTTGGAAATAGCCAAAAAGATTTGTACAGTGCTACCAGTCAATTATTGTTGACCGAGGCTTTGTTGAAGGCTGGCCAGGGTAGCTCTCAACCCACGTCTCTGGAAGCTCTGTACGCTAACGCGATCTACAGAAACTTCGGTACATTCCCTGGTGGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAATCCTCATGTTTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGCCTACAGTTGACAAGCGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCACGGGATTTACCACCTTCTCTCAAAATAGAGACACGAATTCCCAGTCTCGTTCAACCACCGACCAAAGCGAATATGCCAAATTAATATCTTCCAAGATGGCCAACAAGAGTCTGACAAACCGCGATAAACCAGACAATCTGCCCTCGTCCAATTCTGTGAAGATGGTGATCAAAAATGGAGTCCTGATGCCGAAACAAAAACAACGAAGGTACAGAACTGAGAGGCCTTTTACCTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAACAACATCCTCAGCACTGGAGCCAGAGACCCAGAGGAGGTCACTCGACAAGGGGAAGGCCACCTTCCAGTCATCCTACGCTGATTCAAAACCTTGGACAGGCAACTTCTCAAGGCAGTCAATCGTACAACAACATCCTGCCAAAAGTGGAACAGTCAACGAATCCGGAATTTACGAGGCATTCTATCTCCGACCAAGTGAAGTACGCTATCCTGGCACAGCAATTAAAGGCAAACAAAATGGAAGACAATGACTCTGAAGAGGAACTGGTGATAGACGAAGGGCCCCAAGAGAAGGAAACTCAAGAATCTCAGGATCAAAGGGAGAAGAGTTTGTTGAGAGGACAATTGGAAGCTGCAGAATCTACGAAGGAAACTGTAGTGAAAGAAGAACCCATGGAATGTTCAAACGATGCCGCTAACCGGACAAACGTTAACCCGGAGAAGAACGAACAAACTGTTAGCGAACAACAGAAAAAATCTGACACGGAGAAGGCTACTGTGACGGAAAATTCGGTTGATAAGAATCCTGACAGAGTGATCAAAACGGAATCGGTTAATACGAACAGCGAAAAGATGGAGGATGGAGCACCTGATCTCGCCAGCGTGTCAGAACTGTTAGACAATGCCTCCCAACAGTACCAGCAGTTTCGACCCCAATATTTAAGCGACGAAGAAGGTCTGGTAGCATCGAACAGCGATTGCAATAATTCTGGCAGTGATGAGAAATCCGACTCTGTAAATTCGTCGCATTCGACGAACGCGTCGAAGAAAAAGAAAAAAAAGAAGAAAAAAAAGAAGAAATCGGCATATTCAATGGCCCCGAATAGAGTAATCTGTCCATACTGTGAAAGACCATTTCCATGGACCTCGTCGCTCAGACGACATATTTTGACACACACTGGACAGAAACCTTATCAATGCGTTCACTGTTCGTTGCTATTCACAACGAAATCCAACTGCGACCGTCATTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTTAGAAACTCTTCTTCTCCAGATTCTCAAGCGGTCATCAACAATAGTAACTCGTTCTCCATGAGGAACGTTCCTGAAAGACCCTACAAGTGCAATCAGTGTCCCAGCTCAACATTTTCAACGTTGGGCAACCTAAAGAAACATCGTTCCACTAAACACGCTCGGAAGATGAAGACCAGGTCGGACACTCCATCCAGCGAACCTCAAGCCAGCCCACGGGAATGTCCAAAGCCGAATAACGAACAAACTGATTATGACAGTCAGTCTTCGAGCGTGTCTGAAGGGATAGAAACTTCTTCGATGCCAGGACTTACCAAATCGAATTCTAACGCTTCGCAATTGGCCAACGAAACAGCTAGGTCGAGGAAACCTTCGCCGAGATCGTCACCCGGGCCCAGTGATGTTCCTTTTAAGTGCCACTTGTGCGACTGTGGTTTCGCAGAACGACACGATTGCCTCGAACACATAAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGACATGGACATCGACGCGGTCGAAGACCAGCAACAACCGCCGCCCCAACATCATACCAGCGACGGAGAGGAAAAACGGGGACGTTTCCCAGACTACAGTAACAGGAAGGTTGTATGTGCATTCTGTATGAGGCGATTCTGGTCTGCGGAGGATCTCCGGCGCCATATGAGAACACACACCGGAGAACGACCTTTCTCCTGCGATATATGCTGCAGAAGATTCACCTTGAAGCATAGTATGCTGCGGCACAGAAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAACTCACCCGCACAGCCACCTACGATCACACCACGAAGCCAACAACAGCAACAAATTCTGGTGACAGCCAACAACGGAAATTCCCGTATTCAAGACAGAATCTCTTTGCCAACTGTTACTCCAGTCGCGACCGGCGATGCAGCCCCCAGTGGATTAATAAGATTCAATCCATACGAGAAATTAACCACTCTGACAGGGAAATTGGCCAGTATTCCATCAAACGCAAATCCAGATGCAGAGAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCCGCCAAGTTATTAGGAGTAAAGCGTAGCCATGAGTGA
Protein Sequence: MDDAQRCLTVKNGPTQENENETPADAASSPSSVELPESAHPCPACSTVLPTSRELTNHLRGHNSPRSTDCSGEDDYCCGVCNKVLSSASSLDRHVHLRTAHRGASPNSCTDSEGSSDSDKSSRQQRHLEEYNNNEITKRNSPNIGDKRDEEQTSSLTGKRKCPNYASDSETQKRHKILLNSSRSEMKSRPDDNQNIYNCPVCGRQDFATSALLETHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSMGNTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGELTKFQCSKCLRAFPCRSALDAHETDCGTTNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQSFRSDASTPENNVKFNNSVNSSGSSSTYCAEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVAPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEARKSLVYPPEREDLHHQAQIHYPSVSMEVRGGEIRIIEEAKLQNSSMSIYSTSHFEKNDAFSRHGQPLELTQRNCEETKPGQDAKSDYSKLDDDLESRSSEGSVSLLVTETKTDSHQRIQASPMNLKKGLDISDNIGEDGPLDLSMDVLDLSKKSKEKEDNNMAAAHEQFGNSQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFGTFPGGVGAGILPPYMFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSTGFTTFSQNRDTNSQSRSTTDQSEYAKLISSKMANKSLTNRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGSQSYNNILPKVEQSTNPEFTRHSISDQVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKETQESQDQREKSLLRGQLEAAESTKETVVKEEPMECSNDAANRTNVNPEKNEQTVSEQQKKSDTEKATVTENSVDKNPDRVIKTESVNTNSEKMEDGAPDLASVSELLDNASQQYQQFRPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSDTPSSEPQASPRECPKPNNEQTDYDSQSSSVSEGIETSSMPGLTKSNSNASQLANETARSRKPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQQILVTANNGNSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: -
80% Identity: -