Basic Information

Insect: Bombus turneri
Gene Symbol: Rreb1
Assembly: GCA_014825825.1
Location: CM026102.1:8988075-8998042[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.007 0.63 10.7 0.2 1 23 40 62 40 62 0.96

2 16 0.00028 0.025 15.1 0.4 1 23 76 98 76 98 0.97

3 16 6.9e-07 6.2e-05 23.3 1.2 1 23 104 127 104 127 0.98

4 16 0.012 1.1 9.9 0.1 1 23 222 246 222 246 0.95

5 16 0.062 5.5 7.7 3.0 2 23 252 274 252 274 0.95

6 16 1.6 1.4e+02 3.3 0.6 1 19 330 348 330 350 0.89

7 16 0.46 41 5.0 0.1 1 23 463 485 463 485 0.96

8 16 2.4e-05 0.0022 18.4 0.3 1 23 494 516 494 516 0.98

9 16 0.0011 0.096 13.3 2.8 1 23 522 545 522 545 0.97

10 16 0.00039 0.035 14.6 3.0 1 23 927 950 927 950 0.97

11 16 0.00056 0.051 14.1 0.1 3 23 1227 1247 1225 1247 0.97

12 16 0.5 45 4.8 6.0 1 23 1253 1276 1253 1276 0.97

13 16 0.0035 0.32 11.6 2.2 1 23 1314 1338 1314 1338 0.97

14 16 5.5 4.9e+02 1.6 7.4 1 23 1422 1445 1422 1445 0.96

15 16 0.0096 0.86 10.3 0.4 2 23 1496 1517 1495 1517 0.94

16 16 1.1 1e+02 3.7 8.2 1 23 1523 1545 1523 1545 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.007	0.63	10.7	0.2	1	23	40	62	40	62	0.96
2	16	0.00028	0.025	15.1	0.4	1	23	76	98	76	98	0.97
3	16	6.9e-07	6.2e-05	23.3	1.2	1	23	104	127	104	127	0.98
4	16	0.012	1.1	9.9	0.1	1	23	222	246	222	246	0.95
5	16	0.062	5.5	7.7	3.0	2	23	252	274	252	274	0.95
6	16	1.6	1.4e+02	3.3	0.6	1	19	330	348	330	350	0.89
7	16	0.46	41	5.0	0.1	1	23	463	485	463	485	0.96
8	16	2.4e-05	0.0022	18.4	0.3	1	23	494	516	494	516	0.98
9	16	0.0011	0.096	13.3	2.8	1	23	522	545	522	545	0.97
10	16	0.00039	0.035	14.6	3.0	1	23	927	950	927	950	0.97
11	16	0.00056	0.051	14.1	0.1	3	23	1227	1247	1225	1247	0.97
12	16	0.5	45	4.8	6.0	1	23	1253	1276	1253	1276	0.97
13	16	0.0035	0.32	11.6	2.2	1	23	1314	1338	1314	1338	0.97
14	16	5.5	4.9e+02	1.6	7.4	1	23	1422	1445	1422	1445	0.96
15	16	0.0096	0.86	10.3	0.4	2	23	1496	1517	1495	1517	0.94
16	16	1.1	1e+02	3.7	8.2	1	23	1523	1545	1523	1545	0.98

Sequence Information

Coding Sequence: ATGGACGACGCGCAACGCTGTCTTACTGTTAAGAACGGACCCACCCAGGAAAATGAGAACGAAACACCAGCTGACGCTGCATCCTCACCGTCTAGCGTTGAACTACCAGAAAGCGCACACCCATGTCCAGCTTGTTCGACCGTTTTGCCCACCTCCAGGGAGTTAACGAACCACCTACGCGGCCATAATTCGCCTCGCAGCACCGACTGTAGCGGCGAGGATGACTATTGCTGCGGCGTGTGCAACAAGGTGCTGAGCTCTGCGAGTTCCCTCGACAGACACGTGCTGGTGCACTCCGGGGAACGGCCGTTCAAATGCAAGTACTGTGAGATGGCGTTCACCACGAACGGCAATATGAACAGGCATTTGAGGACAGCGCACAGAGGCGCCTCGCCCAACAGCTGCACCGACTCCGAGGGTAGCAGCGACTCGGACAAATCATCCAGGCAACGACATCTCGAGGAATACAACAACAACGAGATCACGAAAAGAAACTCGCCAAATATCGGGGAGAAACGGGACGAGGAACAGACCTCGTCGTTAACCGGAAAGAGAAAGTGCCCCGACTATCCGAGCGACAGCGAAACACGCAAGAGGCACAAGATTCTTCTAAATAGTTCGAGAAGCGAGATGAAATCGAGACCGGACGACAACCAGAACATTTACAATTGTCCAGTATGCGGGCGACAGGATTTTGCCACTAGCGCCCTCTTAGAAACGCATCTGGAACGAAGTCATCCGGAATTCCCGGCGAAATGCGACACGTGCAACTTGTCGTTCAAAAACCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTCGCGGAACACTCGATCGGAAATACCGCGAGAAATCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACGTTCGTCGATTTCTCGTCCGATAAGTTCCCGGCGATAGCGAGAGCTGTCTGCGAACAATCGCTTCACCGGCCAGCTTCCGGCGAGGTAGCCAAATTCCAATGTTCCAAATGTCTGCGAGCATTCCCTTGCAGATCCGCGTTGGACGCCCACGAAACTGACTGCGGCACGATGAATTCGCAAAGCAGAACGACCGACGATAGCCAATCGAGAAGAGACGATTTCTTCGCCGGCTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAGGAAGGCAAAGATCTTGCCGATATCCAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAGTTTTCGATCAGACGCCAGTACACCCGAGAACAACGTCAAATTTAATACCAGCGTAAACTCTTCTGGTAGTTCGAGTACGTATTGCCCCGAGTACCACGAGGAGGAAGCTCAAGACGCGTTTTCCGCCGAATTCAGAAAAATGAAATTGAAAGGGGAGTTCCCTTGCAGGCTCTGTTCCTCCATATTTCCTAATCTAAGAGCGCTAAAAGGGCACAACAGGGCGCACATGGGCGTCGCACCTGGCATGCCGTATCCTTGTAATATGTGCCCTTATACCAGCACCGATAAAGCCACTCTGGTCAGGCATCTGAGGTCTCACAATGGCGACAGACCTTACGAATGCTCTCTCTGCAATTACGCTTTCACAACCAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGAGAAGATATTAAGAGCGTTCTCATTTATCATCCAAACGAAGATTCTACGAACGAGAACGTGGAACGTGGCAACTCACCCAGAGTATTGAAGGATGAAGTGAGAAAGAGCCTGGTATATCCGCCAGAACGCGAAGATCTTCACCACCAGACGCAAATACATTATCCTTCGGTTTCTATGGAGGTAAGAGGCGAGATCAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCCATGTCGATATACAGCACCAGCCACTTTGAAAAAAATGATGCGTTTTCGAGGCATGGTCAGCCTTTGGAGCTGACCCAAAGGAACTCCGAGGAGACGAAACCTGGTCAGGATGCCAAATCCGATTATTCCAAGTTGGACGACGATTTGGAGTCGAGGTCGTCCGAGGGTAGCGTATCTCTAGTCACGGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTGAAGAAAGGTCTCAACATATCGGACAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTGGATCTCAGCAAGAAGTCGAAGGAGAAGCAGGACAATAACTTCGCCGTGGCTCACGAACAATTTGGGAATAGCCAAAAAGATTTGTACAGTGCTACCAGTCAATTATTGTTGACCGAGGCTTTGTTGAAGGCTGGCCAGGCTAGCTCTCAACCTACATCTCTGGAAGCTCTGTACGCTAACGCGATCTACAGAAACTTCGGTACATTCCCTGGTGGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAATCCTCATGTTTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGCCTACAGTTGACAAGTGGAGGTACCTTGGTGGAGCCACCCATAGGTAGCACGGGATTTACCACCTTCTCTCAAAATAGAGACACGAATTCCCAGTCTCGTTCAACCACCGACCAAAGTGAATATGCCAAATTAATATCTTCCAAGATGGCCAACAAGAGTCTGACAAACCGCGATAAACCAGACAATCTGCCCTCGTCCAATTCTGTGAAGATGGTGATCAAAAATGGAGTCCTGATGCCTAAACAAAAGCAACGAAGGTACAGAACTGAGAGGCCTTTTACCTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAACAACATCCTCAGCACTGGAGCCAGCGACCCAGAGGAGGTCACTCGACAAGGGGAAGGCCACCTTCCAGCCATCCTACGCTGATTCAAAACCTTGGACAGGCGACATCTCAAGGCGGCCAATCGTACAACAACATCCTGCCAAAAGTGGAACAGTCAACGAATCCGGAATTTACCAGGCATTCTATCTCCGACCAAGTGAAGTACGCTATACTGGCACAGCAATTAAAGGCAAACAAAATGGATGACAATGACTCTGAAGAAGAACTGGTAATAGACGAAGGGCCCCAAGAGAAGGAAAATCAAGAATCTCAGGATCAAAGGGAGAAGAGTCTGTTGAGAGGACAACTGGAAGCTGCAGAATCTACGAAGGAAACTGTAGTGAAAGAAGAACCTATGGAATGTTCAAACGATCGCACTAACGAGACAAATGTTAACCTGCAGAAGAACGAACAAACCGTTACTGAACAACAGAAAAAATCTGACACGGAGAAGGCTACTGTGACGGAAAATTCGGTTGATAAGAATCCTGACAGAGCGATCAAAACGGAATCGGTTAATATGAACAGCGAAAAGATGGAGGATGGAGCACCTGATCTCGCCAGCGTGTCGGAACTGTTAGACAACGCCTCCCAACAATACCAGCAGTTTCGACCCCAATATTTAAGCGACGAAGAAGGTCTAGTAGCATCGAACAGTGATTGCAATAATTCTGGCAGTGATGAGAAATCCGACTCTGTAAATTCGTCGCATTCGACGAACGCGTCGAAGAAAAAGAAAAAAAAGAAGAAAAAAAAGAAGAAATCGGCATATTCAATGGCCCCGAATAGAGTAATCTGTCCATACTGTGAAAGACCATTTCCATGGACCTCGTCTCTCAGACGACATATTTTGACACACACTGGACAGAAACCTTATCAATGCGTTCACTGTTCCTTGCTATTCACAACGAAATCCAACTGCGACCGTCATTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTTAGAAACTCTTCTTCTCCAGATTCTCAAGCGGTCATCAACAATAGCAACTCGTTCTCCATGAGGAACGTTCCTGAAAGACCCTACAAGTGCAATCAGTGTCCCAGCTCGACATTTTCAACCTTGGGTAACCTAAAGAAACATCGTTCCACTAAACACGCTCGGAAGATGAAGACCAGGTCGGACACTCCATCCAGCGAACCTCAAGCCAGCCCACGGGAATGTCCAAAGCCGAATAACGAACAAACTGATTATGACAGTCAGTCTTCGAGCGTGTCTGAAGGGATAGAAACTTCTTCGATGCCAGGACTTACCAAATCGAATTCTAACGCTTCACAATTGGCCAACGAAACAGCTAGGTCAAGGAAACCTTCGCCGAGATCGTCACCCGGGCCCAGTGATGTTCCTTTTAAGTGCCACTTGTGCGACTGTGGTTTCGCAGAACGACACGATTGCCTCGAACACATAAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGACATGGACATCGACGCGGTCGATGACCAGCAACAACCGCCGCCCCAACATCATACCAGCGACGGAGAGGAAAAACGGGGACGTTTCCCAGACTATAGTAACAGGAAGGTTGTATGTGCATTCTGTATGAGGCGATTCTGGTCTGCAGAGGATCTCCGGCGCCATATGAGAACACACACCGGAGAACGACCTTTCTCCTGCGATATATGCTGCAGAAGATTCACCTTGAAGCATAGTATGCTGCGGCACAGAAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAACTCACCCGCACAGCCACCTACGATCACACCACGAAGTCAACAGCAGCAACAAATTCTGGTGACAGCCAACAACGGAAATTCCCGTATTCAAGACAGAATCTCTTTGCCAACTGTTACTCCAGTCGCGACCGGCGATGCAGCCCCGAGTGGATTAATAAGATTCAATCCATACGAGAAATTAACCACTCTGACAGGAAAATTGGCCAGTATTCCGTCAAACGCAAATCCAGATGCAGAGAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCCGCCAAGTTATTAGGAGTAAAGCGTAGCCATGAGTGA
Protein Sequence: MDDAQRCLTVKNGPTQENENETPADAASSPSSVELPESAHPCPACSTVLPTSRELTNHLRGHNSPRSTDCSGEDDYCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGEKRDEEQTSSLTGKRKCPDYPSDSETRKRHKILLNSSRSEMKSRPDDNQNIYNCPVCGRQDFATSALLETHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSIGNTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNSQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQSFRSDASTPENNVKFNTSVNSSGSSSTYCPEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVAPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEVRKSLVYPPEREDLHHQTQIHYPSVSMEVRGEIRIIEEAKLQNSSMSIYSTSHFEKNDAFSRHGQPLELTQRNSEETKPGQDAKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNISDNIGEDGPLDLSMDVLDLSKKSKEKQDNNFAVAHEQFGNSQKDLYSATSQLLLTEALLKAGQASSQPTSLEALYANAIYRNFGTFPGGVGAGILPPYMFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSTGFTTFSQNRDTNSQSRSTTDQSEYAKLISSKMANKSLTNRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGGQSYNNILPKVEQSTNPEFTRHSISDQVKYAILAQQLKANKMDDNDSEEELVIDEGPQEKENQESQDQREKSLLRGQLEAAESTKETVVKEEPMECSNDRTNETNVNLQKNEQTVTEQQKKSDTEKATVTENSVDKNPDRAIKTESVNMNSEKMEDGAPDLASVSELLDNASQQYQQFRPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSDTPSSEPQASPRECPKPNNEQTDYDSQSSSVSEGIETSSMPGLTKSNSNASQLANETARSRKPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVDDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQQILVTANNGNSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00214579;
80% Identity: -