Basic Information

Insect: Bombus sibiricus
Gene Symbol: Rreb1
Assembly: GCA_014737505.1
Location: JACXIM010000052.1:8849784-8855938[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0068 0.76 10.7 0.2 1 23 37 59 37 59 0.96

2 15 0.0058 0.65 10.9 1.2 1 20 73 92 73 98 0.93

3 15 0.0096 1.1 10.2 0.0 1 23 193 217 193 217 0.95

4 15 0.06 6.7 7.7 3.0 2 23 223 245 223 245 0.95

5 15 1.6 1.8e+02 3.3 0.6 1 19 301 319 301 321 0.89

6 15 0.44 50 5.0 0.1 1 23 434 456 434 456 0.96

7 15 2.4e-05 0.0027 18.5 0.3 1 23 465 487 465 487 0.98

8 15 0.001 0.12 13.3 2.8 1 23 493 516 493 516 0.97

9 15 0.00038 0.043 14.7 3.0 1 23 898 921 898 921 0.97

10 15 0.00055 0.061 14.2 0.1 3 23 1198 1218 1196 1218 0.97

11 15 0.49 55 4.9 6.0 1 23 1224 1247 1224 1247 0.97

12 15 0.0034 0.39 11.6 2.2 1 23 1285 1309 1285 1309 0.97

13 15 5.3 6e+02 1.6 7.4 1 23 1393 1416 1393 1416 0.96

14 15 0.0093 1 10.3 0.4 2 23 1467 1488 1466 1488 0.94

15 15 1.1 1.2e+02 3.8 8.2 1 23 1494 1516 1494 1516 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0068	0.76	10.7	0.2	1	23	37	59	37	59	0.96
2	15	0.0058	0.65	10.9	1.2	1	20	73	92	73	98	0.93
3	15	0.0096	1.1	10.2	0.0	1	23	193	217	193	217	0.95
4	15	0.06	6.7	7.7	3.0	2	23	223	245	223	245	0.95
5	15	1.6	1.8e+02	3.3	0.6	1	19	301	319	301	321	0.89
6	15	0.44	50	5.0	0.1	1	23	434	456	434	456	0.96
7	15	2.4e-05	0.0027	18.5	0.3	1	23	465	487	465	487	0.98
8	15	0.001	0.12	13.3	2.8	1	23	493	516	493	516	0.97
9	15	0.00038	0.043	14.7	3.0	1	23	898	921	898	921	0.97
10	15	0.00055	0.061	14.2	0.1	3	23	1198	1218	1196	1218	0.97
11	15	0.49	55	4.9	6.0	1	23	1224	1247	1224	1247	0.97
12	15	0.0034	0.39	11.6	2.2	1	23	1285	1309	1285	1309	0.97
13	15	5.3	6e+02	1.6	7.4	1	23	1393	1416	1393	1416	0.96
14	15	0.0093	1	10.3	0.4	2	23	1467	1488	1466	1488	0.94
15	15	1.1	1.2e+02	3.8	8.2	1	23	1494	1516	1494	1516	0.98

Sequence Information

Coding Sequence: ATGAATGAACGATTTACTGTTAAGAACGGACCCACCCAGGAAAATGAAAACGAAGCACCAGCTGATCCTGCATCCTCACCATCTAGTATTGAACTACCAGAAAGCGCACACCCATGTCCAGCTTGTTCGACCGTTTTGCCCACCTCCAGGGAGTTAACGAACCACCTACGCGGCCATAATTCGCCTCGCAGCACAGACTGTAGCGGCGAGGATGACTATTGCTGCGGCGTGTGCAATAAGGTGCTGAGCTCTGCAAGTTCCCTCGACAGACATGTGCATTTGAGGACAGCGCACAGAGGCGCCTCGCCTAACAGCTGCACCGACTCCGAGGGTAGCAGCGACTCGGACAAATCATCCAGGCAGCGACATCTCGAGGAATACAACAACAACGAGATCACAAAAAGAAACTCGCCAAATATCGGGGACAGACGGGACGAGGAACAGACCTCGTCGTTAACTGGAAAGAGAAAGTGCCCTAACTATGCCAGCGACGGCGAAACACAAAAGAGGCACAAGATTCTTCTAAATAGCTCGAGAAGCGAGATGAAATCGAGACCGGACGACAACCAGAACATTTACAATTGTCCAGTATGCGGGCGACAGGATTTTGCCACTAGCGCCCTCTTAGAAGCGCATCTGGAACGAAGTCATCCGGAATTCCCTGCGAAATGCGACACGTGCAACTTGTCGTTCAAAAACCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTCGCGGAACACTCGATGGGAAATACCGCGAGAAATCTGAGAAACTCCATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTCTCGTCCGATAAGTTCCCAGCAATAGCGAGAGCTGTCTGTGAACAATCGCTTCACCGGCCAGCTTCTGGCGAGGTAGCCAAATTCCAATGCTCCAAATGTCTGCGAGCATTCCCTTGTAGATCCGCGTTGGACGCCCACGAAACTGACTGCGGCACGATGAATTTGCAAAGCAGAACAACCGACGATAGCCAATCGAGAAGAGACGATTTCTTCGCTGGCTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAGGAAGGCAAAGATCTTGCCGATATCCAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAGTTTTCGATCAGACGCCAGTACACCCGAGAACAATATCAAATTTAATGCCAGTGTAAACTCTTCTGGTAGTTCAAGTACGTATTGCGCAGAGTACCACGAGGAAGAAGCTCAAGACGCGTTTTCTGCGGAGTTCAGAAAAATGAAATTGAAAGGGGAGTTCCCTTGCAGGCTCTGTTCCTCGATATTTCCTAATCTAAGAGCCCTAAAAGGTCACAACAGGGCGCACATGGGCGTGGGACCTGGCATGCCATATCCTTGTAATATGTGCCCTTATACCAGCACTGATAAAGCGACTCTGGTAAGGCATCTGAGGTCTCATAATGGCGACAGACCTTACGAATGCTCTCTCTGCAATTACGCTTTCACAACTAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGAGAAGACATTAAGAGCGTTCTCATCTATCATCCAAATGAAGATTCTACGAACGAGAACGTGGAACGTGGAAACTCACCCAGAGTTTTGAAAGATGAAGTGAGGAAGAGCCTGGTATATCCGCCAGAACGCGAAGATCTTCACCACCAGGCGCAAATACATTATCCTCCGGTTTCTATGGACGTAAGAGGTGAGATCAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCGATGTCGATATACAGCACTAGCCACTTTGAAAAAAATGATACGTTTTCAAGGCATGGTCAGCCTTTGGAGCTGACCCAAAGGAACTCCGAGGAGACGAAACCTGGTCAAGATGCCAAATCGGATTATTCGAAGTTGGACGACGATTTGGAGTCGAGGTCGTCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTAAAGAAAGGTCTCAACATATCGGAAAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTAGATCTCAGCAAGAAGTCGAAGGAGAAGGAGGACGATAACTTCGCCGCGGTTCACGAACAATTTGGAAAAAACCAAAAAGATTTGTACAGTGCTACCAGTCAATTATTGTTGACCGAGGCTTTGTTGAAGGCTGGCCAGGGTAGCTCTCAGCCTACATCTCTGGAAGCTCTGTACGCTAACGCAATCTACAGAAACTTCGGTACATTCCCTGGTAGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAATCCTCATGTCTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGTCTACAGTTGACAAGTGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCGCGGGTTTTACCACCTTTTCTCAAAATAGAGACATGAATTCCCAGTCTCATTCAACAACCGACCAAAGTGAATATGCCAAATTAATATCTTCTAAGATGGCCAACAAGAGTCTGACAACCCGCGATAAACCAGACAATCTGCCCTCGTCCAATTCTGTGAAGATGGTGATCAAAAATGGAGTCCTGATGCCTAAACAAAAGCAACGAAGGTACAGAACCGAGAGGCCTTTTACCTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAACAGCATCCTCAGCACTGGAGCCAGCGACCCAGAGGAGGTCACTCGACAAGGGGAAGACCACCTTCCAGCCATCCTACGCTGATTCAAAACCTTGGACAGGCAACTTCTCAAGGCAGTCAATCGTATAACAACATACTGCCAAAAGTGGAACAGTCAACGAATCCGGAATTTACGAGGCATTCTATTTCCGACCAAGTGAAGTACGCTATCCTGGCACAGCAATTAAAAGCAAACAAAATGGAAGACAATGACTCTGAAGAAGAACTGGTCATAGACGAAGGGCCACAGGAGAAAGAAAATCAAGAATCTCAGGATCAAAGGGAGAAGAGTCTGTTGAGAGGACAATTGGAAGCTACAGAATCTACGAAAGGAACTGTAGTGAAAGAAGAAGCCATGGAATGTTCAAACGATGGCCCAAACGAGACAAATGTTGAGCTGGAGAAGAACGAACAAACTGTTACTGAACAACAGAAAAAATCTGACACGGAGAAGGCTGCTGTGACGGAAAATTCGGTTGAAAAGATTCCTGACAGAGTGCTCAAACCGGAATCGGTTAATATGAACAACGAGAAGATGGAGGATGGAGCACCTGATCTCGCTAGCGTGTCAGAGCTGTTAGACAACGCCTCCCAACAATACCAGCAGTTTCAACCCCAGTATTTAAGCGATGAAGAAGGTCTAGTAGCATCGAACAGTGATTGCAATAATTCTGGCAGTGATGAGAAATCCGACTCTGTAAATTCATCACATTCGGCGAACGCGTCAAAAAAAAAGAAGAAAAAGAAGAAAAAAAAGAAGAAATCGGCATATTCAATGGCCCCGAACAGAGTAATCTGTCCATACTGTGAACGACCATTTCCATGGACCTCGTCTCTCAGACGACATATTTTGACACACACTGGACAGAAACCTTATCAATGCGTTCACTGTTCGTTGCTATTCACAACCAAATCCAACTGCGACCGTCATTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTTAGAAACTCTTCTTCTCCAGATTCTCAAGCGGTCATTAACAATAGTAACTCGTTCTCGATGAGGAACGTTCCTGAAAGACCCTACAAGTGCAATCAGTGTCCCAGCTCAACATTTTCGACGTTGGGTAACCTAAAGAAACATCGTTCCACTAAACACGCTAGGAAGATGAAGACCAGGTCGGACACTCCATCCAGTGAACCTCAAACCAGCCCACAGGAGTGTCCAAAGCCGAATAACGAACAAACTGATTATGATAGTCAGTCTTCGAGCGTGTCTGAAGGGATAGAAACTTCTTCGATGCCAGGGCTTACTAAATCGAATTCTAACGCTTCACAATTGACCAACGAAACAGCTAGGTCAAGGAGACCTTCACCGAGATCATCACCTGGACCCAGTGATGTGCCTTTTAAGTGCCACTTGTGCGACTGTGGTTTCGCAGAACGACACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGACATGGACATCGACGCGGTTGAAGACCAACAACAGCCACCGCCTCAACATCATACCAGCGACGGAGAAGAAAAACGGGGACGTTTCCCAGACTATAGTAACAGGAAGGTTGTATGTGCATTCTGTATGAGGCGGTTCTGGTCTGCAGAGGATCTCCGGCGCCATATGAGAACACACACCGGAGAACGACCTTTCTCCTGCGATATATGCTGCAGAAGATTCACCTTGAAACATAGTATGCTGCGGCACAGGAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAATTCACCTGCACAGCCACCTACGATCACACCACGAAGTCAACAGCAACAACAAATTCTGGTGACAGCCAACAACGGAAATTCCCGTATTCAAGACAGAATCTCTTTACCAACTGTTACTCCAGTCGCGACCGGTGATGCAGCTCCGAGTGGATTAATAAGATTCAATCCATACGAGAAATTAACCACTTTGACAGGAAAATTGGCCAGTATTCCATCAAACGCAAATCCAGATGCAGAGAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCCGCCAAGCTATTAGGAGTAAAGCGTAGCCATGAGTGA
Protein Sequence: MNERFTVKNGPTQENENEAPADPASSPSSIELPESAHPCPACSTVLPTSRELTNHLRGHNSPRSTDCSGEDDYCCGVCNKVLSSASSLDRHVHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDRRDEEQTSSLTGKRKCPNYASDGETQKRHKILLNSSRSEMKSRPDDNQNIYNCPVCGRQDFATSALLEAHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSMGNTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQSFRSDASTPENNIKFNASVNSSGSSSTYCAEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEVRKSLVYPPEREDLHHQAQIHYPPVSMDVRGEIRIIEEAKLQNSSMSIYSTSHFEKNDTFSRHGQPLELTQRNSEETKPGQDAKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNISENIGEDGPLDLSMDVLDLSKKSKEKEDDNFAAVHEQFGKNQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFGTFPGSVGAGILPPYMFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFTTFSQNRDMNSQSHSTTDQSEYAKLISSKMANKSLTTRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGSQSYNNILPKVEQSTNPEFTRHSISDQVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKENQESQDQREKSLLRGQLEATESTKGTVVKEEAMECSNDGPNETNVELEKNEQTVTEQQKKSDTEKAAVTENSVEKIPDRVLKPESVNMNNEKMEDGAPDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSANASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSDTPSSEPQTSPQECPKPNNEQTDYDSQSSSVSEGIETSSMPGLTKSNSNASQLTNETARSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQQILVTANNGNSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00214579;
80% Identity: -