Basic Information

Insect: Bombus pascuorum
Gene Symbol: Rreb1
Assembly: GCA_905332965.1
Location: HG995270.1:9070536-9100374[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00082 0.086 13.7 0.2 1 23 39 61 39 61 0.96

2 16 0.031 3.3 8.7 0.0 1 23 75 97 75 97 0.97

3 16 1.8e-06 0.00019 22.0 1.0 1 23 103 126 103 126 0.98

4 16 0.013 1.3 9.9 0.1 1 23 221 245 221 245 0.95

5 16 0.063 6.6 7.7 3.0 2 23 251 273 251 273 0.95

6 16 1.6 1.7e+02 3.3 0.6 1 19 329 347 329 349 0.89

7 16 0.46 49 5.0 0.1 1 23 462 484 462 484 0.96

8 16 2.5e-05 0.0026 18.4 0.3 1 23 493 515 493 515 0.98

9 16 0.0011 0.11 13.3 2.8 1 23 521 544 521 544 0.97

10 16 0.0004 0.042 14.6 3.0 1 23 925 948 925 948 0.97

11 16 0.00057 0.061 14.1 0.1 3 23 1221 1241 1219 1241 0.97

12 16 0.51 54 4.9 6.0 1 23 1247 1270 1247 1270 0.97

13 16 0.0036 0.38 11.6 2.2 1 23 1308 1332 1308 1332 0.97

14 16 5.6 5.9e+02 1.6 7.4 1 23 1416 1439 1416 1439 0.96

15 16 0.0098 1 10.3 0.4 2 23 1490 1511 1489 1511 0.94

16 16 1.2 1.2e+02 3.7 8.2 1 23 1517 1539 1517 1539 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00082	0.086	13.7	0.2	1	23	39	61	39	61	0.96
2	16	0.031	3.3	8.7	0.0	1	23	75	97	75	97	0.97
3	16	1.8e-06	0.00019	22.0	1.0	1	23	103	126	103	126	0.98
4	16	0.013	1.3	9.9	0.1	1	23	221	245	221	245	0.95
5	16	0.063	6.6	7.7	3.0	2	23	251	273	251	273	0.95
6	16	1.6	1.7e+02	3.3	0.6	1	19	329	347	329	349	0.89
7	16	0.46	49	5.0	0.1	1	23	462	484	462	484	0.96
8	16	2.5e-05	0.0026	18.4	0.3	1	23	493	515	493	515	0.98
9	16	0.0011	0.11	13.3	2.8	1	23	521	544	521	544	0.97
10	16	0.0004	0.042	14.6	3.0	1	23	925	948	925	948	0.97
11	16	0.00057	0.061	14.1	0.1	3	23	1221	1241	1219	1241	0.97
12	16	0.51	54	4.9	6.0	1	23	1247	1270	1247	1270	0.97
13	16	0.0036	0.38	11.6	2.2	1	23	1308	1332	1308	1332	0.97
14	16	5.6	5.9e+02	1.6	7.4	1	23	1416	1439	1416	1439	0.96
15	16	0.0098	1	10.3	0.4	2	23	1490	1511	1489	1511	0.94
16	16	1.2	1.2e+02	3.7	8.2	1	23	1517	1539	1517	1539	0.98

Sequence Information

Coding Sequence: ATGGATTACTCGACGAAAGTTACTGTTAAGAACGGACCCACACAGGAAAATGAAAACGAAACACCAGCTGATGCTGCATCTTCACCATCTAGTGTTGAGCTACCAGAACGCGCACACCCATGTCCAGCTTGTCCGACCGTTTTGTCTACTTCCAAGGAGCTAACGAACCACTTACGTGGCCATAATTCGCCACGTAGCACAGACTGTAGCGTCGAGGATGACTATTCTTGCGGAGTTTGCATGAAAATACTCAGCTCCGCAAGCTCCCTCGACAGACATGTGTTAGTACACTCTGGGGAACGGCCGTTCAAATGCAAGAACTGTGAGATGGCGTTCACCACAAACGGCAATATGAACAGGCATTTAAGGACAGCGCACAGAGGCGCCTCGCCTAACAGCTGTACCGACTCCGAAGGTAGCAGCGACTCGGACAAATCATCCAGGCAGCGACATCTCGAGGAATATAACAACAACGAAATCACAAAAAGAAACTCGCCAAATATCGGGGACAAACGGAACGAGGAACAGACCTCGTCGTTAACTGGAAAAAGAAAATGCCCTAACTATGCGAGCGACAGCGAAACACAGAAGAGGCATAAGATTCTTCTAAATAGTTCGAGAAGCGAGATAAAATCGAGACAGGATGACAATCAGAACATTTACAATTGTCCAGTATGCGGGCGACAAGATTTTGCCACTAGCGCCCTCTTAGAAACGCATCTGGAACGAAGTCATCCGGAATTCCCTGCAAAATGCGACACATGTAACTTGTCGTTCAAAAACCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTTGCAGAACACTCGATGGGAAATACCGCGAGAAATCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTCTCGTCCGATAAATTCCCAGCAATAGCTAGAGCTGTCTGCGAACAATCGCTTCACCGTCCAGCTTCCGGTGAGGTAGCAAAATTCCAATGCTCCAAATGTCTGCGAGCATTCCCTTGTAGATCCGCGTTGGATGCCCACGAAACTGACTGCGGCACGATGAATTTGCAAAGTAGAACAACTGACGATAGCCAATCGCGAAGAGACGATTTCTTCGCTGGTTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAAGAAGGCAAAGATCTTGCCGATATACAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAGTTTTCGATCAGACACCAGTACACCAGAGAACAACATCAAATTTAATACCAGTGCAAATTCTTCTGGTAGTTCGAGTACGTATTGCGCAGAGTACCACGAGGAGGAAGCTCAAGACGCTTTTTCTGCGGAATTCAGAAAAATGAAATTGAAAGGGGAGTTCCCTTGTAGGCTCTGTTCCTCGATATTTCCTAATCTAAGAGCCCTAAAAGGTCACAATAGGGCGCACATGGGCGTGGGACCTGGCATGCCGTATCCTTGTAATATGTGTCCTTATACCAGCACTGATAAAGCGACTCTGGTGAGGCATCTGAGGTCTCATAATGGCGACAGACCTTACGAATGCTCTCTCTGCAATTACGCTTTCACAACTAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGAGAAGACATTAAGAGCGTTCTCATTTATCATCCAAATGAAGATTCTACGAATGAGAACGTGGAACGCGGAAACTCACCCAGAGTTTTGAAGGATGAAGCGAGGAAAAGCCTGGTATATCCGACAGAACGCGACGATCTTCACCAGGCGCAAATACACTATCCTCCGGTTTCTATGGAGGTCAGAGGTGAGATCAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCGATGTCGATGTACAGCACTAGCCACTTTGAAAAAAATGATGCGTTTTCAAGGCATGGTCAGCCTTTGGAGCTGACCCAGAGGAACTCCGAGGAGACAAAACCTGGTCAAGATGCCAAATCGGATTATTCGAAGTTGGACGACGATTTGGAGTCGAGGTCATCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTAAAGAAAGGTCTCAACATATCGGAAAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTAGATCTCAGCAAGAAGTCGAAAGAAAAGGAGGACGATAACTTCGCCGCGGCTCACGAACAATTTGGAAATAACCAAAAAGATTTGTACAGTGCTACCAGTCAATTATTGTTGACTGAGGCTTTGTTGAAGGCTGGCCAGGGTAGTTCTCAACCTACATCTCTGGAAGCTCTGTACGCTAACGCAATCTACAGAAATTTCAGTACATTCCCTGGTAGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAATCATCATATCTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGTCTACAGTTGACAAGCGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCGCGGGATTTACCACCTTTTCTCAAAATAGAGACATGAACTCCCAGTCTCATTCAACAACCGACCAAAGTGAATATGCCAAATTAATATCTTCTAAGATGGCCAACAAGAGTCTGGCAAACCGCGATAAACCAGACAATCTGCCCTCGTCCAATTCTGTAAAGATGGTGATCAAAAATGGAGTCCTGATGCCTAAACAAAAGCAACGGAGGTACAGAACTGAGAGGCCTTTTACTTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAGCAACATCCTCAGCACTGGAGTCAGCGACCAAGAGGAGGTCACTCGACAAGAGGAAGACCACCTTCCAGCCATCCTACGTTGATTCAAAACCTTGGTCAGGCAACTCCTCAAGGCAGTCAATCATATAACAATATCCTGCCAAAAGCGGAACAGTCAACGAATCCGGAATTTACGAGGCATTCTATCTCCGACCAAGTGAAGTACGCTATCCTGGCACAGCAATTAAAGGCAAACAAAATGGAAGACAATGACTCTGAAGAAGAACTGGTAATAGACGAAGGGCCCCAAGAGAAAGAAACTCAAGAATCTCAAGATCAAAGGGAGAAGAGTCTATTGCGAGGACAGTTAGAAGCTACAGATTCTACGAAAGAAATTGTAGTGAAAGAAGAAGTTATGGAATGTTCAAACGATGACCCAAACGAGACAAATGTTGAGCTGGAGAAGAACGAACGAATTGTTACTGAACAACAGAAAAAATCTGACACGGAGAGAGCTACTGTGATGGAAAATTCGATTGATAAAAATCCTGGCAAAGTGCTCAACCTGGAGAACAGCGAGAAGATAGAGGATGGAGCACCTGATCTCGCTAGCGTGTCAGAGCTGTTGGACAATGCCTCCCAACAATACCAGCAGTTTCAACCCCAATATTTAAGCGATGAAGAGGGTTTAGTAGCATCGAACAGTGATTGCAATAATTCTGGCAGTGATGAAAAATCTGACTCTGTAAATTCATCACATTCGACGAACGCATCAAAAAAAAAAAAGAAAAAGAAGAAAAAAAAGAAGAAATCAGCATATTCAATGGCCCCCAATAGAGTAATCTGTCCATACTGTGAAAGACCATTTCCATGGACCTCGTCTCTCAGACGACATATTTTGACACACACTGGACAGAAACCTTATCAATGCGTTCACTGTTCCTTGCTATTTACAACGAAATCGAACTGCGACCGTCATTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTTCGAAACTCTTCCTCTCCAGATTCTCAAGCGATTATCAACAATAGTAACTCGTTCTCCATGAGAAACGTTCCTGAAAGACCCTACAAATGCAATCAATGTCCCAGCTCAACATTTTCAACGTTGGGTAACCTAAAGAAACATCGTTCCACTAAACACGCTCGAAAGATGAAGACCAGGTCGGAGACTCCATCCAGTGAACCTCAAACCAGCCCACAGGAGTGTCCAAAGCCGAATAACGAACAAACTGATTATGATAGTCAGTCTTCGAGCGTGTCTGAAGGGATAGAAACTTCTTCGATGCCAGGACTTAGCAAATCGAATTCTGGCGCTTCGCAATTGGCCAACGAAACAGCTAGATCGAGAAGACCTTCACCGAGATCATCACCTGGGCCCAGTGATGTTCCCTTTAAGTGCCACTTGTGCGATTGTGGTTTCGCAGAAAGACACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGATATGGACATCGACGCGGTTGAAGACCAGCAACAACCACCCCCACAACACCATACCAGCGATGGAGAAGAAAAACGGGGACGTTTCCCAGACTATAGTAACAGGAAGGTTGTATGTGCATTTTGTATGAGGCGGTTCTGGTCTGCAGAGGATCTCCGGCGCCATATGAGAACACACACCGGAGAACGGCCTTTCTCCTGTGATATATGCTGCAGAAGATTCACCTTGAAACATAGTATGTTGCGGCACAGAAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAACTCACCTGCACAGCCACCTACGATCACACCACGAAGTCAACAACAACAACAAATTCTGGTGGCAGCCAACAACGGAAATTCCCGTATTCAAGATAGAATCTCTTTACCAACTGTTACTCCAGTCGCGACCGGTGATGCAGCCCCGAGTGGATTAATAAGATTCAATCCGTACGAGAAATTAACCACTCTAACAGGAAAATTGGCCAGTATTCCATCAAACGCAAATCCAGATGCAGAGAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCAGCCAAGCTATTAGGAGTAAACCGTAGCCATGAGTGA
Protein Sequence: MDYSTKVTVKNGPTQENENETPADAASSPSSVELPERAHPCPACPTVLSTSKELTNHLRGHNSPRSTDCSVEDDYSCGVCMKILSSASSLDRHVLVHSGERPFKCKNCEMAFTTNGNMNRHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDKRNEEQTSSLTGKRKCPNYASDSETQKRHKILLNSSRSEIKSRQDDNQNIYNCPVCGRQDFATSALLETHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSMGNTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQSFRSDTSTPENNIKFNTSANSSGSSSTYCAEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEARKSLVYPTERDDLHQAQIHYPPVSMEVRGEIRIIEEAKLQNSSMSMYSTSHFEKNDAFSRHGQPLELTQRNSEETKPGQDAKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNISENIGEDGPLDLSMDVLDLSKKSKEKEDDNFAAAHEQFGNNQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFSTFPGSVGAGILPPYMFNHHIFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFTTFSQNRDMNSQSHSTTDQSEYAKLISSKMANKSLANRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATPQGSQSYNNILPKAEQSTNPEFTRHSISDQVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKETQESQDQREKSLLRGQLEATDSTKEIVVKEEVMECSNDDPNETNVELEKNERIVTEQQKKSDTERATVMENSIDKNPGKVLNLENSEKIEDGAPDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAIINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSETPSSEPQTSPQECPKPNNEQTDYDSQSSSVSEGIETSSMPGLSKSNSGASQLANETARSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQQILVAANNGNSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVNRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: -
80% Identity: -