Basic Information

Insect: Bombus vancouverensis
Gene Symbol: Rreb1
Assembly: GCA_011952275.1
Location: NW:8831992-8937921[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0056 0.35 10.7 0.2 1 23 39 61 39 61 0.96

2 16 0.00022 0.014 15.1 0.4 1 23 75 97 75 97 0.97

3 16 5.5e-07 3.5e-05 23.3 1.2 1 23 103 126 103 126 0.98

4 16 3.5 2.2e+02 1.9 0.1 1 8 221 228 221 245 0.78

5 16 0.049 3.1 7.7 3.0 2 23 251 273 251 273 0.95

6 16 1.3 82 3.3 0.6 1 19 329 347 329 349 0.89

7 16 0.36 23 5.0 0.1 1 23 462 484 462 484 0.96

8 16 1.9e-05 0.0012 18.4 0.3 1 23 493 515 493 515 0.98

9 16 0.00085 0.054 13.3 2.8 1 23 521 544 521 544 0.97

10 16 0.00031 0.02 14.6 3.0 1 23 926 949 926 949 0.97

11 16 0.00045 0.029 14.1 0.1 3 23 1226 1246 1224 1246 0.97

12 16 0.4 26 4.9 6.0 1 23 1252 1275 1252 1275 0.97

13 16 0.0028 0.18 11.6 2.2 1 23 1313 1337 1313 1337 0.97

14 16 4.4 2.8e+02 1.6 7.4 1 23 1421 1444 1421 1444 0.96

15 16 0.0077 0.49 10.3 0.4 2 23 1495 1516 1494 1516 0.94

16 16 0.91 58 3.7 8.2 1 23 1522 1544 1522 1544 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0056	0.35	10.7	0.2	1	23	39	61	39	61	0.96
2	16	0.00022	0.014	15.1	0.4	1	23	75	97	75	97	0.97
3	16	5.5e-07	3.5e-05	23.3	1.2	1	23	103	126	103	126	0.98
4	16	3.5	2.2e+02	1.9	0.1	1	8	221	228	221	245	0.78
5	16	0.049	3.1	7.7	3.0	2	23	251	273	251	273	0.95
6	16	1.3	82	3.3	0.6	1	19	329	347	329	349	0.89
7	16	0.36	23	5.0	0.1	1	23	462	484	462	484	0.96
8	16	1.9e-05	0.0012	18.4	0.3	1	23	493	515	493	515	0.98
9	16	0.00085	0.054	13.3	2.8	1	23	521	544	521	544	0.97
10	16	0.00031	0.02	14.6	3.0	1	23	926	949	926	949	0.97
11	16	0.00045	0.029	14.1	0.1	3	23	1226	1246	1224	1246	0.97
12	16	0.4	26	4.9	6.0	1	23	1252	1275	1252	1275	0.97
13	16	0.0028	0.18	11.6	2.2	1	23	1313	1337	1313	1337	0.97
14	16	4.4	2.8e+02	1.6	7.4	1	23	1421	1444	1421	1444	0.96
15	16	0.0077	0.49	10.3	0.4	2	23	1495	1516	1494	1516	0.94
16	16	0.91	58	3.7	8.2	1	23	1522	1544	1522	1544	0.98

Sequence Information

Coding Sequence: ATGGATTACTCGACAAAAGTTACTGTTAAGAACGGACCCACCCAGGAAAATGAGAACGAAGCACCAGCTGATGCTGCATCCTCACCATCTAGTGTTGAACTACCAGAAAGCGCACACCCATGTCCAGCTTGTTCGACCGTTTTGCCCACCTCCAGGGAGTTAACGAACCACCTACGCGGCCATAATTCGCCTCGCAGCACAGACTGTAGCGGCGAGGATGACTATTGCTGCGGCGTGTGCAATAAGGTGCTGAGCTCTGCAAGTTCCCTCGACAGACATGTGTTGGTGCACTCCGGGGAACGGCCGTTCAAATGCAAGTACTGTGAGATGGCGTTCACTACGAACGGCAATATGAACAGGCATTTGAGGACAGCGCACAGAGGCGCCTCGCCTAACAGCTGCACCGACTCCGAGGGTAGCAGCGACTCGGACAAATCATCCAGGCAGCGACATCTCGAGGAATACAACAACAACGAGATCACAAAAAGAAACTCGCCAAATATCGGGGACAAACGGGACGAGGAACAGACCTCGTCGTTAACTGGAAAGAGAAAGTATCCTAACTATGCGAGCGACAGCGAAACACAAAAGAGGCACAAGATTCTTCTAAGTAGCTCGAGAAGCGAGATGAAATCGAGATCGGACGACAACCAGAACGTTTACAATTGTCCAGTATGCGGGCGACAGGATTTTGCCACTGGCGCCATCTTAGAATCGCATCTGGAACGAAGTCATCCGGAATTCCCCGCGAAATGCGACACGTGCAACTTGTCGTTCAAAAACCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTCGCGGAACACTCGTTGGGAAATACCACGAGAAATCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTCTCGTCCGATAAGTTCCCAGCAATAGCTAGAGCTGTCTGCGAACAATCGCTTCACCGGCCAGCTTCTGGCGAGGTAGCCAAATTCCAATGCTCGAAATGTCTGCGAGCATTCCCTTGTAGATCCGCGTTGGACGCCCACGAAACTGACTGCGGCACGATGAATTTGCAAAGCAGAACAACCGACGATAGCCAATCGAGAAGAGACGATTTCTTCGCTGGCTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAGGAAGGCAAAGATCTTGCCGATATCCAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAATTTTCGATCAGACACCAGCACACCCGAGAACAACATCAAATTTAATACCAGTGTAAACTCTTCTGGTAGTTCAAGTACGTATTGCACAGAGTACCACGAGGAGGAAGCTCAAGACGCGTTTTCTGCAGAGTtcagaaaaatgaaattgaaaggGGAGTTCCCTTGCAGGCTCTGTTCCTCGATATTCCCTAATCTAAGAGCCCTAAAAGGTCACAACAGGGCGCACATGGGCGTGGGACCTGGCATGCCATATCCTTGTAATATGTGCCCTTATACCAGCACTGATAAAGCGACTCTGGTGAGGCATCTGAGGTCTCACAATGGCGACAGACCTTACGAATGCTCTCTCTGCAATTACGCTTTCACAACTAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGAGAAGACATTAAGAGCGTTCTCATCTATcatccaaatgaagattctaCGAACGAGAACGTGGAACGTGGAAACTCACCCAGAGTTTTGAAGGATGAAGTGAGGAAGAGCCTGGTATATCCGCAAGAACGCGAAGATCTTCACCACCAGGCGCAAATGCATTATCCTCCGGTTTCTATGGAGGTAAGAGGTGAGATCAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCGATGTCGATATACAGCACTAGCCACTTTGAAAAAAATGATGCGTTTTCAAGACATGGTCAGCCTTTGGAGCTGACCCAAAGGAACTCCGAGGAGACAAAACCTGGTCAAGATGCCAAATCGGATTATTCGAAGTTGGACGACGATTTGGAGTCGAGATCGTCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTAAAGAAAGGTCTCAACATATCGGAAAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTGGATCTCAGCAAGAAGTCGAAGGAGAAGGAGGACGATAACTTCGCCGCGGCTCACGAACATTTTGGAAAAAACCAAAAAGATTTGTACAGTGCTACCAGTCAATTATTGTTGACCGAGGCTTTGTTGAAGGCTGGCCAGGGTAGCTCTCAACCTACATCTCTGGAAGCTCTGTACGCTAACGCAATCTACAGAAACTTCGGTACATTCCCTGGTAGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAATCCTCATGTCTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGTCTACAGTTGACAAGTGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCGCGGGATTTACCACCTTTTCTCAAAACAGAGACATGAATTCCCAGTCTCATTCAACAACCGACCAAAGTGAATATGCCAAATTAATATCTTCTAAGATGGCCAACAAGAGTCTAACAACCCGTGATAAATCAGACAATCTCCCCTCGTCCAATTCTGTGAAGATGGTGATCAAAAATGGAGTCCTGATGCCTAAACAAAAGCAACGAAGGTACAGAACTGAGAGGCCTTTTACCTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAACAACATCCTCAGCACTGGAGCCAGCGACCCAGAGGAGGTCATTCGACAAGGGGAAGACCACCTTCCAGCCATCCTACGCTGATTCAAAACCTTGGACAGGCAACTTCTCAAGGCAGTCAATCGTACAACAACATCCTGCCAAAAGTGGAACAGTCAACGAATCCGGAATTTACGAGGCATTCTATCTCCGACCATGTGAAGTACGCTATCCTGGCACAGCAATTAAAGGCAAACAAAATGGAAGACAATGACTCTGAAGAAGAACTGGTCATAGACGAAGGGCCACAGGAGAAAGAAAATCAAGAATCTCAGGATCAAAAGGAGAAGAGTCTGTTGAGAGGACAATTGGAAGCCACAGAATCTACGAAAGAAACTGTAGTGAAAGAAGAAGCCATGGAATGTTCAGACGATGGCCCAAACGAGACAAATGTTGAGCTGGAGAAGAACAAACAAACTGTTACTGAACAACAGAAAAAATCTGACACGGAGAAGGCTACTGTGACGGAAAATTCAGTTGAAAAGAATCCTGACAGAGTGATCAAAACGGAATCAGTTAATATGAACAGCGAGAAGATGGAGGATGGAGCACCTGATCTCGCTAGCGTGTCAGAACTGTTAGACAATGCCTCCCAACAATACCAGCAGTTTCAACCCCAGTATTTAAGCGATGAAGAAGGTCTAGTAGCATCGAACAGTGATTGCAATAATTCTGGCAGTGATGAGAAATCCGACTCTGTAAATTCATCACATTCGACGAACGcgtcgaagaaaaaaaagaaaaagaagaaaaaaaagaagaaatctgCATATTCAATGGCCCCGAACAGAGTAATCTGTCCATACTGTGAACGACCATTTCCATGGACCTCGTCTCTCAGACGACATATTTTGACACACACTGGACAGAAACCTTATCAATGCGTTCACTGTTCGTTGCTATTCACAACGAAATCCAACTGTGACCGTCATTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTTAGGAACTCTTCTTCTCCAGATTCTCAAGCGGTCATCAGCAATAGTAACTCGTTCTCCATGAGGAACGTTCCTGAAAGACCCTACAAGTGCAATCAGTGTCCCAGCTCAACATTTTCAACGTTGGGTAACCTAAAGAAACATCGTTCTACTAAACACGCTCGGAAGATGAAGACCAGATCGGACACTCCATCCAGTGAACCTCAAACCAGTCCACAGGAGTGTCCAAAGCCGAATAACGAACAAACTGATTACGATAGTCAGTCTTCGAGCGTGTCTGAAGGGATAGAAACTTCTTCGATGCCAGGACTTACCAAATCGAATTCTGGCGCTTCACAATTGGCCAACGAAACAGCTAGGTCAAGGAGACCTTCACCGAGATCATCACCTGGGCCCAGTGATGTGCCTTTTAAGTGCCACTTGTGCGATTGTGGTTTCGCAGAACGACACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGACATGGACATCGACGCGGTTGAAGACCAACAACAACCACCGCCGCAACATCATACCAGCGACGGAGAAGAAAAACGGGGACGTTTCCCAGACTATAGTAACAGGAAGGTTGTATGTGCATTCTGTATGAGGCGGTTCTGGTCTGCAGAGGATCTACGGCGCCATATGAGAACACACACCGGAGAACGACCTTTCTCCTGCGATATATGCTGCAGGAGATTCACCTTGAAACATAGTATGCTGCGGCACAGAAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAATTCACCTGCACAGCCACCTACGATCACACCACGAAGTCAACAGCAGCAACAAATTCTGGTGACAGCCAACAACGCAAATTCCCGTATTCAAGACAGAATCTCTTTACCAACTGTTACTCCAGTCGCGACCGGTGATGCAGCCCCGAGTGGATTAATAAGATTCAATCCATACGAGAAATTAACCACTCTGACAGGAAAATTGGCCAGTATTCCATCAAACGCAAATCCAGATGCAGAGAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCCGCCAAGTTATTAGGAGTAAAGCGTAGCCATGAGTGA
Protein Sequence: MDYSTKVTVKNGPTQENENEAPADAASSPSSVELPESAHPCPACSTVLPTSRELTNHLRGHNSPRSTDCSGEDDYCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDKRDEEQTSSLTGKRKYPNYASDSETQKRHKILLSSSRSEMKSRSDDNQNVYNCPVCGRQDFATGAILESHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSLGNTTRNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQNFRSDTSTPENNIKFNTSVNSSGSSSTYCTEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEVRKSLVYPQEREDLHHQAQMHYPPVSMEVRGEIRIIEEAKLQNSSMSIYSTSHFEKNDAFSRHGQPLELTQRNSEETKPGQDAKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNISENIGEDGPLDLSMDVLDLSKKSKEKEDDNFAAAHEHFGKNQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFGTFPGSVGAGILPPYMFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFTTFSQNRDMNSQSHSTTDQSEYAKLISSKMANKSLTTRDKSDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGSQSYNNILPKVEQSTNPEFTRHSISDHVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKENQESQDQKEKSLLRGQLEATESTKETVVKEEAMECSDDGPNETNVELEKNKQTVTEQQKKSDTEKATVTENSVEKNPDRVIKTESVNMNSEKMEDGAPDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVISNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSDTPSSEPQTSPQECPKPNNEQTDYDSQSSSVSEGIETSSMPGLTKSNSGASQLANETARSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQQILVTANNANSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00214579;
80% Identity: -