Basic Information

Insect: Bombus opulentus
Gene Symbol: Rreb1
Assembly: GCA_034509555.1
Location: CM067410.1:8993495-9001609[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00097 0.076 13.6 0.2 1 23 80 102 80 102 0.96

2 15 0.48 38 5.2 0.2 1 20 116 135 116 141 0.93

3 15 0.015 1.2 9.9 0.1 1 23 236 260 236 260 0.95

4 15 0.074 5.8 7.7 3.0 2 23 266 288 266 288 0.95

5 15 1.9 1.5e+02 3.3 0.6 1 19 344 362 344 364 0.89

6 15 0.55 43 5.0 0.1 1 23 477 499 477 499 0.96

7 15 2.9e-05 0.0023 18.4 0.3 1 23 508 530 508 530 0.98

8 15 0.0013 0.1 13.3 2.8 1 23 536 559 536 559 0.97

9 15 0.00047 0.037 14.6 3.0 1 23 940 963 940 963 0.97

10 15 0.00068 0.053 14.1 0.1 3 23 1236 1256 1234 1256 0.97

11 15 0.61 47 4.8 6.0 1 23 1262 1285 1262 1285 0.97

12 15 0.0043 0.33 11.6 2.2 1 23 1323 1347 1323 1347 0.97

13 15 6.6 5.2e+02 1.6 7.4 1 23 1431 1454 1431 1454 0.96

14 15 0.012 0.91 10.3 0.4 2 23 1505 1526 1504 1526 0.94

15 15 1.4 1.1e+02 3.7 8.2 1 23 1532 1554 1532 1554 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00097	0.076	13.6	0.2	1	23	80	102	80	102	0.96
2	15	0.48	38	5.2	0.2	1	20	116	135	116	141	0.93
3	15	0.015	1.2	9.9	0.1	1	23	236	260	236	260	0.95
4	15	0.074	5.8	7.7	3.0	2	23	266	288	266	288	0.95
5	15	1.9	1.5e+02	3.3	0.6	1	19	344	362	344	364	0.89
6	15	0.55	43	5.0	0.1	1	23	477	499	477	499	0.96
7	15	2.9e-05	0.0023	18.4	0.3	1	23	508	530	508	530	0.98
8	15	0.0013	0.1	13.3	2.8	1	23	536	559	536	559	0.97
9	15	0.00047	0.037	14.6	3.0	1	23	940	963	940	963	0.97
10	15	0.00068	0.053	14.1	0.1	3	23	1236	1256	1234	1256	0.97
11	15	0.61	47	4.8	6.0	1	23	1262	1285	1262	1285	0.97
12	15	0.0043	0.33	11.6	2.2	1	23	1323	1347	1323	1347	0.97
13	15	6.6	5.2e+02	1.6	7.4	1	23	1431	1454	1431	1454	0.96
14	15	0.012	0.91	10.3	0.4	2	23	1505	1526	1504	1526	0.94
15	15	1.4	1.1e+02	3.7	8.2	1	23	1532	1554	1532	1554	0.98

Sequence Information

Coding Sequence: ATGAATCGAGTCACCTGGCCGACGCGTTTGTCAGCGGAATGCCAGGCGTGTGAGACCGGCTTTAATCGCACCTGTTCCTCTCGTCCTGCCATCGAATCGACGAAGACCGGGCCTGTCCTTGTGCCAGCAATTTGTCCGCTAGTTACTGTTAAGAACGGACCCACAcaggaaaatgaaaacgaaacacCAGCTGATGCTGCATCTTCACCATCTAGTGTTGAGCTACCAGAACGCGCACACCCATGTCCAGCTTGTCCGACCGTTTTGTCTACTTCCAAAGAGCTAACGAACCACTTACGTGGCCATAATTCGCCACGCAGCACAGACTGTAGCGTCGAGGATGACTATTCTTGCGGAGTTTGCATGAAAATACTCAGCTCCGCAAGCTCCCTCGACAGACATGTGCATTTAAGGACAGCGCACAGAGGCGCCTCGCCTAACAGCTGTACCGACTCCGAAGGTAGCAGCGACTCGGACAAATCATCCAGGCAGCGACATCTCGAGGAATATAACAACAACGAAATCACAAAAAGAAACTCGCCAAATATCGGGGACAGACGGAACGAGGAACAGACCTCGTCGTTAACTGGAAAAAGAAAGTGCCCTAACTATGCGAGCGACGGCGAAACACAGAAGAGGCATAAGATTCTTCTAAATAGTTCGAGAAGCGAGATAAAATCGAGACAGGATGACAACCAGAACATTTACAATTGTCCAGTATGCGGGCGACAAGATTTTGCCACTAGCGCCCTCTTAGAAACGCATCTGGAACGAAGTCATCCGGAATTCCCTGCAAAATGCGACACGTGCAACTTGTCGTTCAAAAACCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTTGCAGAACACTCGATGGGAAATACCGCGAGAAATCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTCTCGTCCGATAAATTCCCAGCAATAGCGAGAGCTGTCTGCGAACAATCGCTTCACCGGCCAGCTTCCGGTGAGGTAGCAAAATTCCAATGCTCCAAATGTCTGCGAGCATTCCCTTGTAGATCCGCGTTGGATGCCCACGAAACTGACTGCGGCACGATGAATTTGCAAAGCAGAACAACTGACGATAGCCAATCGCGAAGAGACGATTTCTTCGCTGGTTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAAGAAGGCAAAGATCTTGCCGATATACAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAGTTTTCGATCAGACACCAGTACACCCGAGAACAACATCAAATTTAATACCAGTGCAAATTCTTCTGGTAGTTCGAGTACGTATTGCGCAGAGTACCACGAGGAGGAAGCTCAAGACGCTTTTTCTGCGGAattcagaaaaatgaaattgaaagggGAGTTCCCTTGTAGGCTCTGTTCCTCGATATTTCCTAATCTAAGAGCCCTAAAAGGTCACAATAGGGCGCACATGGGCGTGGGACCTGGCATGCCGTATCCTTGTAATATGTGCCCTTATACCAGCACTGATAAAGCGACTCTGGTGAGGCATCTGAGGTCTCATAATGGCGACAGACCTTACGAATGCTCTCTCTGCAATTACGCTTTCACAACTAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGAGAAGACATTAAGAGCGTTCTCATTTATCATCCAAATGAAGATTCTACAAACGAGAACGTGGAACGTGGAAACTCACCCAGAGTTTTGAAGGATGAAGCGAGGAAAAGCCTGGTATATCCGACAGAACGCGACGATCTTCACCAGGCGCAAATACACTATCCTCCGGTTTCTATGGAGGTCAGAGGTGAGATCAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCGATGTCGATGTACAGCACTAGCcactttgaaaaaaatgacGCGTTTTCAAGGCATGGTCAGCCTTTGGAGCTGACCCAGAGGAACTCCGAGGAGACAAAACCTGGTCAAGATGCCAAATCGGATTATTCGAAGTTGGACGACGATTTGGAGTCGAGGTCATCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCtatgaatttaaagaaaggTCTCAACATGTCGGAAAACATAAGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTAGATCTCAGCAAGAagtcgaaagaaaaggaggacGATAACTTCGCCGCGGCTCACGAACAATTTGGAAATAACCAAAAAGATTTGTACAGTGCTACCAGTCAATTATTGTTGACTGAGGCTTTGTTGAAGGCTGGCCAGGGTAGCTCTCAACCTACATCTCTGGAAGCTCTGTACGCTAACGCAATCTACAGAAATTTCAGTACATTCCCTGGTAGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAATCATCATATCTTTGGCCAGGATTTCTCTATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGTTTACAGTTGACAAGCGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCGCGGGATTTACCACCTTCTCTCAAAATAGAGACATGAATTCCCAGTCTCATTCAACAACCGACCAAAGTGAATATGCcaaattaatatcttctaaGATGGCCAACAAGAGTCTGGCAAACCGCGATAAACCAGACAATCTGCCCTCGTCCAATTCTGTAAAGATGGTGATCAAAAATGGAGTCCTTATGCCTAAACAAAAGCAACGGAGGTACAGAACTGAGAGGCCTTTTACTTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAGCAACATCCTCAGCACTGGAGCCAGCGACCGAGAGGAGGTCACTCGACAAGAGGAAGACCACCTTCCAGCCATCCTACATTGATTCAAAACCTTGGTCAGGCAACTTCTCAAGGCAGTCAATCATATAACAACATCCTGCCAAAAGCGGAACAGTCAACGAATCCGGAATTTACGAGGCATTCTATCTCCGACCAAGTGAAGTACGCTATCCTGGCACAGCAATTAAAGGCAAACAAAATGGAAGACAATGACTCTGAAGAAGAACTGGTAATAGACGAAGGGCCCCAAGAGAAAGAAACTCAAGAATCTCAAGATCAAAGGGAGAAGAGTCTATTGCGAGGACAGTTAGAAGCTACAGATTCtacgaaagaaattgtagTGAAAGAAGAAGTCATGGAATGTTCAAACGATGACCCAAACGAGACAAATGTTGAGCTggagaagaacgaacgaattgTTACTGAACAACAGAAAAAATCTGACACGGAGAGGGCTACTGTGATGGAAAATTCGATTGATAAAAATCCTGACAAAGTGCTCAACCTGGAGAACAGCGAGAAGATAGAGGATGGAACACCTGATCTCGCTAGCGTGTCAGAGCTGTTGGACAATGCCTCCCAACAATACCAGCAGTTTCAACCCCAATATTTAAGCGATGAAGAGGGTTTAGTAGCATCGAACAGTGATTGCAATAATTCTGGCAGTGATGAGAAATCTGACTCTGTAAATTCATCACATTCGACGAACgcatcaaaaaaaaaaaagaaaaagaagaaaaaaaagaagaaatcagCATATTCAATGGCCCCCAATAGAGTAATCTGTCCATACTGTGAAAGACCATTTCCATGGACCTCGTCTCTCAGACGACATATTTTGACACATACTGGACAGAAACCTTACCAATGCGTTCACTGTTCTTTGCTATTTACAACGAAATCGAACTGCGACCGTCATTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATGCGTAGAGTTCGAAACTCTTCGTCTCCAGATTCTCAAGCGATTATCAACAATAGTAACTCGTTCTCCATGAGAAACGTTCCTGAAAGACCCTACAAATGCAATCAATGTCCCAGCTCAACATTTTCAACGTTGGGTAACCTAAAGAAACATCGTTCCACTAAACACGCTCGAAAGATGAAGACCAGGTCGGAGACTCCATCCAGTGAACCTCAAACCAGCCCACAGGAGTGTCCAAAGCCGAATAACGAACAAACTGATTATGATAGTCAGTCTTCGAGCGTGTCTGAAGGGATAGAAACTTCTTCGATGCCAGGACTTAGCAAATCGAATTCTGGCGCTTCGCAATTGGCCAACGAAACAGCTAGATCGAGAAGACCTTCACCGAGATCATCACCTGGGCCCAGTGATGTTCCCTTTAAGTGCCACTTGTGCGATTGTGGTTTCGCAGAAAGACACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGATATGGACATCGACGCGGTTGAAGACCAGCAACAACCACCCCAGCAACATCATACCAGCGATGGAGAAGAAAAACGGGGACGTTTCCCAGACTATAGTAACAGGAAGGTTGTATGTGCATTTTGTATGAGGCGGTTCTGGTCTGCAGAGGATCTCCGGCGCCATATGAGAACACACACCGGAGAACGGCCTTTCTCCTGTGATATATGCTGCAGAAGATTCACCTTGAAACATAGTATGTTGCGGCACAGAAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAACTCACCTGCACAGCCACCTACGATCACACCACGAtcacaacaacaacaacaaattCTGGTGGCAGCCAACAACGGAAATTCCCGTATTCAAGACAGAATCTCTTTACCAACTGTTACTCCAGTCGCGACCGGTGATGCAGCCCCGAGTGGATTAATAAGATTCAATCCATACGAGAAATTAACCACTCTAACAGGAAAATTGGCCAGTATTCCATCAAACGCAAATCCAGATGCAGAGAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCAGCCAAGCTATTAGGAGTAAACCGTAGCCATGAGTGA
Protein Sequence: MNRVTWPTRLSAECQACETGFNRTCSSRPAIESTKTGPVLVPAICPLVTVKNGPTQENENETPADAASSPSSVELPERAHPCPACPTVLSTSKELTNHLRGHNSPRSTDCSVEDDYSCGVCMKILSSASSLDRHVHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDRRNEEQTSSLTGKRKCPNYASDGETQKRHKILLNSSRSEIKSRQDDNQNIYNCPVCGRQDFATSALLETHLERSHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFAEHSMGNTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQSFRSDTSTPENNIKFNTSANSSGSSSTYCAEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEARKSLVYPTERDDLHQAQIHYPPVSMEVRGEIRIIEEAKLQNSSMSMYSTSHFEKNDAFSRHGQPLELTQRNSEETKPGQDAKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNMSENISEDGPLDLSMDVLDLSKKSKEKEDDNFAAAHEQFGNNQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFSTFPGSVGAGILPPYMFNHHIFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFTTFSQNRDMNSQSHSTTDQSEYAKLISSKMANKSLANRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGSQSYNNILPKAEQSTNPEFTRHSISDQVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKETQESQDQREKSLLRGQLEATDSTKEIVVKEEVMECSNDDPNETNVELEKNERIVTEQQKKSDTERATVMENSIDKNPDKVLNLENSEKIEDGTPDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAIINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSETPSSEPQTSPQECPKPNNEQTDYDSQSSSVSEGIETSSMPGLSKSNSGASQLANETARSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPQQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQQILVAANNGNSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVNRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: -
80% Identity: -