Basic Information

Insect: Bombus polaris
Gene Symbol: Rreb1
Assembly: GCA_014737335.1
Location: JACXIO010000160.1:765833-772269[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.01 1 10.2 0.1 1 23 60 82 60 82 0.96

2 16 0.00029 0.029 15.1 0.4 1 23 96 118 96 118 0.97

3 16 7e-07 7.2e-05 23.3 1.2 1 23 124 147 124 147 0.98

4 16 0.63 64 4.6 0.0 1 23 242 266 242 266 0.87

5 16 0.063 6.4 7.7 3.0 2 23 272 294 272 294 0.95

6 16 1.7 1.7e+02 3.2 0.6 1 19 350 368 350 370 0.89

7 16 0.47 48 5.0 0.1 1 23 483 505 483 505 0.96

8 16 2.5e-05 0.0025 18.4 0.3 1 23 514 536 514 536 0.98

9 16 0.0011 0.11 13.2 2.8 1 23 542 565 542 565 0.97

10 16 0.0004 0.041 14.6 3.0 1 23 946 969 946 969 0.97

11 16 0.00058 0.059 14.1 0.1 3 23 1246 1266 1244 1266 0.97

12 16 0.52 53 4.8 6.0 1 23 1272 1295 1272 1295 0.97

13 16 0.0036 0.37 11.6 2.2 1 23 1333 1357 1333 1357 0.97

14 16 5.6 5.8e+02 1.6 7.4 1 23 1441 1464 1441 1464 0.96

15 16 0.0099 1 10.2 0.4 2 23 1515 1536 1514 1536 0.94

16 16 1.2 1.2e+02 3.7 8.2 1 23 1542 1564 1542 1564 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.01	1	10.2	0.1	1	23	60	82	60	82	0.96
2	16	0.00029	0.029	15.1	0.4	1	23	96	118	96	118	0.97
3	16	7e-07	7.2e-05	23.3	1.2	1	23	124	147	124	147	0.98
4	16	0.63	64	4.6	0.0	1	23	242	266	242	266	0.87
5	16	0.063	6.4	7.7	3.0	2	23	272	294	272	294	0.95
6	16	1.7	1.7e+02	3.2	0.6	1	19	350	368	350	370	0.89
7	16	0.47	48	5.0	0.1	1	23	483	505	483	505	0.96
8	16	2.5e-05	0.0025	18.4	0.3	1	23	514	536	514	536	0.98
9	16	0.0011	0.11	13.2	2.8	1	23	542	565	542	565	0.97
10	16	0.0004	0.041	14.6	3.0	1	23	946	969	946	969	0.97
11	16	0.00058	0.059	14.1	0.1	3	23	1246	1266	1244	1266	0.97
12	16	0.52	53	4.8	6.0	1	23	1272	1295	1272	1295	0.97
13	16	0.0036	0.37	11.6	2.2	1	23	1333	1357	1333	1357	0.97
14	16	5.6	5.8e+02	1.6	7.4	1	23	1441	1464	1441	1464	0.96
15	16	0.0099	1	10.2	0.4	2	23	1515	1536	1514	1536	0.94
16	16	1.2	1.2e+02	3.7	8.2	1	23	1542	1564	1542	1564	0.98

Sequence Information

Coding Sequence: ATGATATCGTTCTCGGAAGTTTGCTCCAACGGTAGTCCACAGAATAGAAAAGACTTAGTAAATAAGGACGATTGTGGTTCAATTACTGTTAAGAACGGACCCACCCAGGAAAATGAGAACGAAACACCAGCTGATGCTGCATCCTCACCATCTAGTGTTGAACTACCAGAAAGCGCACACCCATGTCCAGCTTGTTCGACCGTTTTGCCCTCCTCCAGGGAGTTAACGAACCACCTACGCGGCCATAATTCGCCTCGCAGCACAGACTGTAGCGGCGAGGATGACTATTGCTGCGGCGTGTGCAATAAGGTGCTGAGCTCTGCAAGTTCCCTTGACAGACATGTATTGGTGCACTCCGGGGAACGGCCGTTCAAATGCAAGTACTGTGAGATGGCGTTCACCACGAATGGTAATATGAACAGGCATTTGAGGACAGCGCACAGAGGCGCCTCGCCTAACAGCTGCACCGACTCCGAGGGTAGCAGCGACTCGGACAAATCATCCAGGCAGCGACATCTCGAGGAATACAACAACAACGAGATCACAAAAAGAAACTCGCCAAATATCGGGGACAAACGGGACGAGGAACAGACCTCGTCGTTAACTGGAAAGAGAAAGTGCCCTAACTATGCAAGCGACAGCGAAACACAGAAGAGGCATAAGATTCTTCTAAATAGTTCGAGGAGCGAGATGAAATCAAGACCGGATGACAACCAGAACATTTACAATTGTCCAGTATGCGGGCGACAGGATTTTGCCACTAGCGCCATCTTAGAAGCACATCTGGAACGAAATCATCCGGAATTCCCTGCGAAGTGCGACACGTGCAACTTGTCTTTTAAAAACCACAGAGTACTGAATCTGCATCGGTTCATGATACATTTCGCGGATCACTCGATGGGAAATACCGCGAGAAATCTGAGAAACTCGATAGTAGGTTTCAACGATTTAACGTTCGTTGATTTTTCGTCCGATAAGTTCCCAGCAATAGCGAGAGCTGTCTGTGAACAATCGCTTCACCGGCCAGCTTCTGGCGAGGTAGCCAAATTCCAATGCTCCAAATGTCTGCGAGCATTCCCTTGTAGATCCGCGTTGGATGCCCACGAAACTGACTGCGGCACGATGAATTTGCAAAGCAGAACAACCGACGATAGCCAATCGAGAAGAGACGATTTCTTCGCTGGCTTGGATCTTCAAAACAAGGCTGCTTTGAGGGAAGCGAAGGAAGGCAAAGATCTTGCCGATATCCAGAGTATCATATCTGTCACCTCTGGACCTATCTTACAGAATTTTCGATCAGACGCCAGCACACCCGAGAACAACATCAAATTTAATACCAGTGTAAACTCTTCTGGTAGTTCAAGTACGTATTGCACAGAGTACCACGAGGAGGAAGCTCAAGACGCGTTTTCTGCGGAGTTCAGAAAAATGAAATTGAAAGGGGAGTTCCCTTGCAGGCTCTGTTCCTCGATATTTCCTAATCTAAGAGCCTTAAAAGGTCACAACAGGGCGCACATGGGCGTAGGACCTGGCATGCCATATCCTTGTAATATGTGCCCTTATACCAGCACTGATAAAGCGACTCTGGTGAGGCATCTGAGGTCTCACAATGGCGACAGACCTTACGAATGCTCTCTCTGCAATTACGCTTTCACAACTAAAGCAAATTGTGAGCGCCATGTACGAAACCGACATGGAAAATTGACAAGAGAAGACATTAAGAGCGTTCTCATCTATCATCCAAATGAAGATTCTACGAACGAGAACGTGGAACGTGGAAACTCACCCAGAGTTTTGAAGGATGAAGTGAGGAAGAGCCTGGTATATCCGCCAGAACGCGAAGATCTTCACCACCAGCAAATACATTATCCTCCAGTTTCTATGGAGGTAAGAGGTGAGATCAGAATAATAGAAGAGGCGAAGCTGCAAAATTCCTCGATGTCGATATACAGTACTAGCCACTTTGAAAAAAATGATGCGTTTTCAAGGCATGGTCAGCCATTGGAGCTGACCCAAAGGAACTCCGAGGAGACAAAACCTGGTCAAGATGCCAAATCGGATTATTCGAAGTTGGACGACGATTTGGAGTCGAGGTCGTCCGAGGGTAGCGTATCTCTAGTCACAGAAACCAAAACAGATTCGCACCAAAGAATACAAGCTAGTCCTATGAATTTAAAGAAAGGTCTCAACATATCGGAAAACATAGGCGAAGACGGTCCGTTGGACCTTTCCATGGACGTACTGGATCTCAGCAAAAAGTCGAAGGAGAAGGAGGACGATAACTTCGCCGTGGCTCACGAACAATTTGGAAAAAACCAAAAAGATTTGTACAGTGCCACCAGTCAATTATTGTTGACCGAGGCTTTGTTGAAGGCTGGCCAGGGTAGCTCTCAACCTACATCTCTGGAAGCTCTGTACGCTAACGCAATCTACAGAAACTTCAGTACATTCCCTGGTAGCGTAGGAGCTGGAATATTGCCACCGTACATGTTCAATCCTCATGTCTTTGGCCAGGATTTCTCCATGAAGGAAAGATTACAGAAGGAATTGGTCAGAGGTCTACAGTTGACAAGTGGAGGTACTTTGGTGGAGCCACCCATAGGTAGCGCGGGATTTACCGCCTTTTCTCAAAATAGAGACATGAATTCCCAGTCTCATTCAACAACCGACCAAAGTGAATATGCCAAATTAATATCTTCTAAGATGGCCAACAAGAGTCTGGCAGCTCGTGATAAACCAGACAATCTACCTTCGTCCAATTCTGTGAAGATGGTAATCAAAAATGGAGTCCTGATGCCTAAACAAAAGCAACGAAGGTACAGAACTGAGAGGCCTTTTACCTGTGAACATTGCTCAGCGAGATTTACCTTGAGGAGCAATATGGAAAGGCACATTAAACAACAACATCCCCAGCACTGGAGCCAGCGACCCAGAGGAGGTCACTCGACAAGGGGAAGACCACCTTCCAGCCATCCTACGCTGATTCAAAACCTTGGACAGGCAACTTCTCAAGGCAGTCAATCGTACAACAACATCCTGTCAAAAGTGGAACAGTCAACGAATCCGGAATTTACGAGGCATTCTATCTCCGACCAGGTGAAGTACGCTATCCTGGCACAGCAATTAAAGGCAAACAAAATGGAAGACAATGACTCTGAAGAAGAACTGGTCATAGACGAAGGGCCACAGGAGAAAGAAAATCAAGAATCTCAGGATCAAAAGGAGAAGAGTCTGTTGAGAGGACAATTGGAAGCTACAGAATCTACGAAAGAAACTGTAATGAAAGAAGAAGCCATGGAATGTACAAACGATGACCCAAACGAGACAAATGTTGAGCTGCAGAACAACGAAGAAATTATTACTGAACAACAGTTAAAATCTGACACGGAGAAGACTACTGTGACGGAAAATTCGGTTGAAAAGAATCCTGACAGAGTGATCAAAACGGAATCAGTTAGTATGAACAGCGAGAAGATGGAGGATGGAACACCTGATCTCGCTAGCGTGTCAGAACTGTTAGACAATGCCTCCCAACAATACCAGCAGTTTCAACCCCAGTATTTAAGCGATGAAGAAGGTCTGGTAGCATCGAACAGTGATTGCAATAATTCTGGCAGTGATGAGAAATCCGACTCTGTAAATTCATCACATTCGACGAACGCGTCGAAGAAAAAGAAAAAAAAGAAGAAAAAAAAGAAGAAATCAGCATATTCAATGGCCCCGAACAGAGTAATCTGTCCGTACTGTGAACGACCATTTCCATGGACTTCGTCTCTCAGACGACATATTTTGACACATACTGGGCAAAAACCTTATCAATGCGTTCACTGTTCGTTGCTATTCACAACGAAATCCAACTGCGACCGTCATTTGCTCCGAAAACATAAAGCAAATCCGAACAAGATACGTAGAGTTAGAAACTCTTCTTCTCCAGATTCTCAAGCGGTCATCAACAATAGTAACTCATTCTCCATGAGGAACGTTCCTGAAAGACCCTACAAGTGCAATCAGTGTCCCAGCTCAACATTTTCAACGTTGGGTAACCTAAAGAAACATCGTTCCACTAAACACGCTCGGAAGATGAAGACCAGGTCGGACACTCCATCCAGTGAACCTCAAACCAGTCCACAGGAGTGTCCAAAACCGAATAACGAACAAACCGATTATGATAGTCAGTCTTCGTGCGTGTCTGAAGGGATAGAAACTTCTTCGATGCCAGGACTTACTAAATCGAATTCTAACGCTTCACAATTGGCCAACGAAACAGCTAGGTCAAGGAGACCTTCACCGAGATCATCACCTGGGCCCAGTGATGTGCCTTTTAAGTGCCACTTGTGCGATTGTGGTTTCGCAGAACGACACGACTGCCTCGAACACATCAAAATGAACCACAAAAAATCCTACGAAATGTTAGTGGCGAAAGGGGCACTGGACATGGACATCGACGCGGTTGAAGACCAGCAACAACCGCCACCACAGCATCATACCAGCGATGGAGAAGAAAAACGGGGACGCTTTCCAGACTATAGTAACAGGAAGGTTGTATGTGCTTTCTGTATGAGGCGGTTCTGGTCTGCAGAGGATCTCCGGCGCCATATGAGAACACACACCGGAGAAAGACCTTTCTCCTGTGATATATGCTGCAGAAGATTCACCTTGAAACATAGCATGCTGCGGCACAGAAAGAAGCACGAGTCCATTGATTCTACCATGTATGTTGGTACAAGCGGAGATGAAGAAAATTCACCTGCACAGCCACCTACGATCACACCACGAAGTCAACAGCAACAGCAAATTCTGGTGACAGCCAACAATGGAAATTCCCGTATTCAAGACAGAATCTCTTTACCAACTGTTACTCCAGTCGCGACCGGTGATGCAGCCCCGAGTGGATTAATAAGATTCAATCCATACGAGAAATTAACTACTCTGACAGGAAAATTGGCCAGTATTCCATCAAACGCAAATCCAGATGCAGAGAGCACGGATAATGATTTGATCTCGAACCTGCTGGGAATAAGAGACAAGAGTTTCATCGACAGAGTACTACAGGCATCCGCTGATGACGCCGCCAAGCTATTAGGAGTAAAGCGTAGCCATGAGTGA
Protein Sequence: MISFSEVCSNGSPQNRKDLVNKDDCGSITVKNGPTQENENETPADAASSPSSVELPESAHPCPACSTVLPSSRELTNHLRGHNSPRSTDCSGEDDYCCGVCNKVLSSASSLDRHVLVHSGERPFKCKYCEMAFTTNGNMNRHLRTAHRGASPNSCTDSEGSSDSDKSSRQRHLEEYNNNEITKRNSPNIGDKRDEEQTSSLTGKRKCPNYASDSETQKRHKILLNSSRSEMKSRPDDNQNIYNCPVCGRQDFATSAILEAHLERNHPEFPAKCDTCNLSFKNHRVLNLHRFMIHFADHSMGNTARNLRNSIVGFNDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTMNLQSRTTDDSQSRRDDFFAGLDLQNKAALREAKEGKDLADIQSIISVTSGPILQNFRSDASTPENNIKFNTSVNSSGSSSTYCTEYHEEEAQDAFSAEFRKMKLKGEFPCRLCSSIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERGNSPRVLKDEVRKSLVYPPEREDLHHQQIHYPPVSMEVRGEIRIIEEAKLQNSSMSIYSTSHFEKNDAFSRHGQPLELTQRNSEETKPGQDAKSDYSKLDDDLESRSSEGSVSLVTETKTDSHQRIQASPMNLKKGLNISENIGEDGPLDLSMDVLDLSKKSKEKEDDNFAVAHEQFGKNQKDLYSATSQLLLTEALLKAGQGSSQPTSLEALYANAIYRNFSTFPGSVGAGILPPYMFNPHVFGQDFSMKERLQKELVRGLQLTSGGTLVEPPIGSAGFTAFSQNRDMNSQSHSTTDQSEYAKLISSKMANKSLAARDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPSSHPTLIQNLGQATSQGSQSYNNILSKVEQSTNPEFTRHSISDQVKYAILAQQLKANKMEDNDSEEELVIDEGPQEKENQESQDQKEKSLLRGQLEATESTKETVMKEEAMECTNDDPNETNVELQNNEEIITEQQLKSDTEKTTVTENSVEKNPDRVIKTESVSMNSEKMEDGTPDLASVSELLDNASQQYQQFQPQYLSDEEGLVASNSDCNNSGSDEKSDSVNSSHSTNASKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCVHCSLLFTTKSNCDRHLLRKHKANPNKIRRVRNSSSPDSQAVINNSNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKMKTRSDTPSSEPQTSPQECPKPNNEQTDYDSQSSCVSEGIETSSMPGLTKSNSNASQLANETARSRRPSPRSSPGPSDVPFKCHLCDCGFAERHDCLEHIKMNHKKSYEMLVAKGALDMDIDAVEDQQQPPPQHHTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQQQILVTANNGNSRIQDRISLPTVTPVATGDAAPSGLIRFNPYEKLTTLTGKLASIPSNANPDAESTDNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKRSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: iTF_00214579;
80% Identity: -