Basic Information

Insect: Xylocopa violacea
Gene Symbol: Rreb1
Assembly: GCA_963969225.1
Location: CAXAJV010000008.1:23292292-23300083[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0012 0.099 13.3 0.1 1 23 44 66 44 66 0.96

2 15 0.00024 0.02 15.5 1.2 1 23 80 102 80 102 0.97

3 15 2.3e-07 1.9e-05 25.0 1.3 1 23 108 131 108 131 0.98

4 15 0.088 7.1 7.5 0.4 1 23 226 250 226 250 0.95

5 15 1.7 1.4e+02 3.4 1.5 3 23 257 278 256 278 0.88

6 15 1.5 1.3e+02 3.5 0.4 1 19 334 352 334 354 0.89

7 15 0.21 17 6.3 0.1 1 23 468 490 468 490 0.96

8 15 5.7e-05 0.0046 17.5 0.7 1 23 499 521 499 521 0.98

9 15 0.0013 0.1 13.3 2.8 1 23 527 550 527 550 0.97

10 15 0.00047 0.038 14.6 3.0 1 23 927 950 927 950 0.97

11 15 0.00067 0.054 14.1 0.1 3 23 1231 1251 1229 1251 0.97

12 15 0.013 1.1 10.0 4.2 1 23 1318 1342 1318 1342 0.97

13 15 2.7 2.2e+02 2.8 4.8 1 23 1426 1449 1426 1449 0.94

14 15 0.011 0.93 10.3 0.4 2 23 1500 1521 1499 1521 0.94

15 15 1.4 1.1e+02 3.7 8.2 1 23 1527 1549 1527 1549 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0012	0.099	13.3	0.1	1	23	44	66	44	66	0.96
2	15	0.00024	0.02	15.5	1.2	1	23	80	102	80	102	0.97
3	15	2.3e-07	1.9e-05	25.0	1.3	1	23	108	131	108	131	0.98
4	15	0.088	7.1	7.5	0.4	1	23	226	250	226	250	0.95
5	15	1.7	1.4e+02	3.4	1.5	3	23	257	278	256	278	0.88
6	15	1.5	1.3e+02	3.5	0.4	1	19	334	352	334	354	0.89
7	15	0.21	17	6.3	0.1	1	23	468	490	468	490	0.96
8	15	5.7e-05	0.0046	17.5	0.7	1	23	499	521	499	521	0.98
9	15	0.0013	0.1	13.3	2.8	1	23	527	550	527	550	0.97
10	15	0.00047	0.038	14.6	3.0	1	23	927	950	927	950	0.97
11	15	0.00067	0.054	14.1	0.1	3	23	1231	1251	1229	1251	0.97
12	15	0.013	1.1	10.0	4.2	1	23	1318	1342	1318	1342	0.97
13	15	2.7	2.2e+02	2.8	4.8	1	23	1426	1449	1426	1449	0.94
14	15	0.011	0.93	10.3	0.4	2	23	1500	1521	1499	1521	0.94
15	15	1.4	1.1e+02	3.7	8.2	1	23	1527	1549	1527	1549	0.98

Sequence Information

Coding Sequence: ATGCAGCATGGCGGAGGGGATAATCTAGCCATAATTACTGTTAAGAGTGGCCCCGACCAGGGACACGAGAACGAAGCGCAAGCCGATGCTGCATCCTCGCCATCGAGTGTCGAATTACCAGAAAGCGCCCACCCCTGTCCCGCCTGCCCCACAGTGTTGTCCACCTCGAGAGAGCTGACGAACCACCTGCGCGCTCACAACTCGCCCCGCAGCACCGACTGCAGCGGCGAGGATGAGTACTGCTGCGGCGTCTGCAACAAGGTGCTCAGCTCGTCGAGCTCCCTGGACAGGCACCGGCTGGTACACTCGGGCGAGCGCCCGTTCAAGTGCAAGTACTGCGACATGGCGTTCACCACCAACGGGAACATGAACAGGCACCTGAGAACGGCGCACAGCGGCGCGTCGCCGCACAGCTGCACCGACTCCGAGGGCAGCAGCGACTCCGAGAAGCCGTCCTCGAAGAGGCGCCACCTCGAGGAGTACAACAACAACGAGGTCACCAAGAGAAAGTCGCCGGACTACATCGAGAGACGGGACGAGAAGTCCCCGTTGTTGCCCGCGAAGAGGAAGTGCCCGAACTACCTGAGCGACAGCGAGGGCCAGAAGAGGCACAAGATACTGCTGAACAACTCGAGGACGGAGATGAAGCCGCGGCCGGACGACAACCAGAACGTCTACAATTGCCCCGTGTGCGGCAGACAAGACTTCGCCACCACCGCCCTGTTGGAGTCGCATCTCGAGCGGTGCCATCCGGAGTTCCCGGCCAAGTGCGTGCCCTGCGATCTCTCGTTCAAGAACCACAGGGTGTTGAATCTGCACCGGTTCATGATCCACTTCGCGGAGCACTCGATTGGGAATCCAGCGAGGAACCTGAGGAACTCGGTGGTGGGCTTCGACGATCTGACGTTCGTCGACTTCTCGTCGGACAAGTTCCCGGCGATAGCGAGGGCTGTCTGCGAGCAGTCACTCCACCGGCCTGCCTCCGGCGAGGTCGCCAAGTTCCAGTGCTCCAAGTGTCTGCGGGCGTTCCCGTGCAGATCCGCGTTGGACGCCCACGAGATAGATTGCGGCACGACGAATTCGCACGCGAGGTCGATGGACGACAGCCAGTCGAGGAGGGACGACTTCTTCGCGGGACTCGATCTTCAGAACAAAGCAGCGCTGACGGAGGCGAAGGAGGGCAAGGACCTGGCCGACATTCAGAGCATCATATCCGTGACGTCCGGCCCGATCTTGCAGAATTTCCCACGGTCGGACGCCAGCACGCCCGAGAACAACATCAAATTCAATCCCAGCGTCGGCTCGTCCGGCTCCTCCGGCACCTTCTCCTCGGAATACCACGAGGAGGAGGCCCAGGACGCGTTCGCCGCCGAGTTCAGGAAGATGAAGCTGAAAGGCGAGTTCCCCTGCCGACTCTGCTCGGCCATATTCCCGAACCTGAGGGCCCTGAAGGGTCACAACAGGGCGCACATGGGCGTCGGGTCCGGCATGCCGTTCCCCTGCAACATGTGCTCGTACACCAGCACCGACAAGGCCACTCTGATCAGGCATCTGCGGTCCCACAACGGCGACAGGCCGTACGAGTGCTCCCTCTGCAACTACGCGTTCACCACCAAAGCGAACTGCGAACGCCACGTGAGAAACCGGCACGGGAAGCTGACCAGGGAGGACATAAAGAGCGTTCTGATCTACCATCCGAACGAGGACTCGACGAACGAGAACGTGGAACGTAGCTCGCCTAGAGTGCCGAAGGACGACGTCAGGAAGAGTCTGATCTATCCCCTGGAACGCGAGAATCTCCAGCACCAGACCCAGATGCACTACCCACCGGTACCGATGGAGGTCAGGGGCGAGATCAGGATAATAGAGGAAGCGAAGCTGCACAATTCAACGATCGCGATGCACAGCGCGAGCCAGTTCGAGAAGAGCGACGCGTTCTCGAGGCCTGGCCAGCCGATGGAGCTCACACAACGGATCGTCGAAGACGGGAAGCCCGGTCAGGACGTTAAGTCGGACTATTCGAAGCTGGACGACGACCTCGAGTCGAGGTCGTCGGAGGGCAGCGTATCTCTAGTCAGTGATACCAAATCAGATTCGCACCAAAGAATACAAGCTAGTCCGATGAACTTGAAGAAGGGTCTGAACGTGTCCGAGAGCACCGGCGAGGACGGCCCGTTGGACCTCTCCATGGACGTGCTGGACCTCAGCAAGAAATCGAGGGAGAAAGAGGACAGCGACTTCCTCGCGTCCCACGAGCAGTTTGGAAAGAAGGACCTGTACAGCGCCAGTCAGCTGTGCCAGCTGACGGAGGCGTTGCTGAAGGCCGGCCAGGGCACCTCTCAACCTACCTCCTTGGAAGCTCTCTACGCCAACGCCATTTACAGGAACTTCAACGCGTTCCCAGCCGGCGTGGGCGCTGGGATCTTGCCGCCGTACATGTTTAACCCTCACGTGTTCGGTCAGGACTTCTCGATGAAGGAGAGGGTGCGGAAAGAGTTGGTCAGGGGTCTGCAGTTGACCAGCGGAGGCACTTTGGTGGAGCCGCCGATCGGCGCCGCGGGATTCACCCCTTTCTCTCAGAGCAGAGACCTGAACGCTCAGTCCGTGACGGACCAGACGGATTACGCGAAGCTGATGTCCTCCAAGATGGTGAACAAAGGCCTCTCGAGCCGCGACAAACCGGACAACTTGCCGTCCTCGAATTCGGTGAAAATGGTCATCAAAAATGGAGTGCTGATGCCTAAACAGAAGCAACGACGGTACAGAACCGAGAGACCGTTCACGTGCGAGCACTGTTCGGCGAGATTCACCTTGAGGAGCAACATGGAGAGACACATAAAGCAGCAGCACCCTCAGTATTGGAGCTCGAAACCCAGGGGAGGACACTCGACCAGAGGAAGACCACCCTCGAGCCATCCGACGTTGTTGCAGAACCTCGGACAACCTGCCTCCCAGGTCGCCCAGCCGTACACCAATATCCTGCCGAAAGTTGAGCCGGCGACGACCACCGAATTCCCGAAGCACCCGATCTCGGACCAGGTGAAGTACGCCATCTTGGCGCAGCAGCTGAAGGCCAACAAAGTGGAAGAAAATGATTCTGAAGAGGAACTAGTGATAGACGAGGATCCGCAGGAGAAGGACAACCAGGAATCTCAGGATCAAAAGGAGAAGAGCTTGTTGAGGGGACAGTTGGAGGGTACAGAATCTGTTAAAGAAGCTACGGTGTCGGAAGAGCCGAAGGAATCAGCGAGAGACGTCTCGGAGGAGACCAACGTGGAGTTTATAAAAAACGAGGAGCCCGTTGTTGAGGAAACGGAGACACCGATTGACGATGAGAAAGGCGCTGAAACGGAGAACTCGAGCGAAGAGAAGAACCTGAACAGAGCGATCAATTCGGAGGAGGTGGAGGTGAAGAACGAGAAGATGGAAGACGGGACAACCGACCTGGCCAGCGTGTCGGAATTACTGGACAACGCGTCCCAGCAGTACCAGCAGTTTCAGCCCCAATATCTGAGCGACGAGGAGGGCCTGGTGGCGTCCCACAGCGACTGCAACAACTCTGGCAGCGACGAGAAGTCTGACTCCGTCAACTCGTTAAACTCCGTCAACGCCtcgtcgaagaagaagaagaaaaagaagaagaagaagaagaagaagtccGCCTACTCGATGGCGCCGAACCGCGTCATCTGTCCGTACTGTGAGCGACCGTTTCCCTGGACCTCCTCGCTCAGGAGACACATCCTCACGCACACCGGCCAGAAACCCTACCAGTGCATCCATTGCTCGCTGCTGTTCACCACCAAGTCGAATTGCGATCGCCACTTGCTGAGGAAGCACAAAGCGAACCCGAATAAGATGCGTCGCGTGAGAAACTCATCGTCGCCCGATTCCCAGGCGGTGATCAACAACAACAACTCGTTCTCCATGAGGAACGTACCCGAGAGGCCGTACAAGTGCAACAAATGCCCCAGCTCGACTTTCTCCACGCTGGGCAATTTGAAGAAGCATCATTCCACCAAGCACGCCAGGAAGATCAAGTCAAGGTCAGACACTCCGTCCAGCGAGCCTCAGAACAGCCCCCGAGAGTGCTCGAAACAGAACAACGAACAAAGCGACTACGACAGCCAGTCTTCGAGCGTGTCCGAAGGCATGGAGACCTCCTCGTTGCCGGGGATTCCCAAGTCGGCTGCGAACACATCACCGTCCACCAACGACACGCCTAGGTCGAGGAGACCGTCGCCGAGGTCGTCGCCTGGACCCAGCGACGTACCCTTCAAGTGCCACCTGTGCGACTGCGGTTTCGCGGAGCGTCAGGATTGCTTGGAACACATCAAAGTTAACCATAAGAAGTCCTACGAGATGTTGGTGGCGAAGGGTGCGTTGGACATGGACATCGACACGGTGGAGGATCAGCAACAACTGCCGCCCCAGCAGCACGCCAGCGACGGGGAAGAGAAAAGGGGACGTTTCCCGGATTACAGCAACAGAAAGGTGGTCTGCGCCTTTTGCATGAGGCGGTTCTGGTCCGCGGAGGATCTCCGCCGCCACATGAGGACCCACACCGGGGAACGGCCATTCTCCTGCGACATTTGCTGCAGAAGGTTCACGTTGAAGCACAGCATGCTGCGGCACAGAAAGAAACACGAGTCGATCGATTCCACGATGTACGTGGGCACCAGCGGTgacgaggagaactcgccagcgcAGCCACCTACGATCACGCCACGAAGCCAACAACAGCCACCAGTATTGGTGGCAGCCAATAGCGGGAATCCCCGCATCCAAGACAGAATCTCTTTACCGACCGTCGCTCCAGTAGCGACAGGCGATGCAGCGCCAAGTGGACTGATGAGATTCAACCCGTACGAGAAGTTGACCACTCTGACGGGGAAGTTGGCCAGCATCCCGCAAAACGTGAATCCAGACGCGAGCGAGAGCGCGGATAACGATTTGATCTCCAACCTGTTGGGGATAAGGGACAAAAGTTTTATCGACCGAGTACTTCAAGCATCCGCGGATGACGCCGCCAAACTGCTGGGGGTAAAACATAGCCACGAGTGA
Protein Sequence: MQHGGGDNLAIITVKSGPDQGHENEAQADAASSPSSVELPESAHPCPACPTVLSTSRELTNHLRAHNSPRSTDCSGEDEYCCGVCNKVLSSSSSLDRHRLVHSGERPFKCKYCDMAFTTNGNMNRHLRTAHSGASPHSCTDSEGSSDSEKPSSKRRHLEEYNNNEVTKRKSPDYIERRDEKSPLLPAKRKCPNYLSDSEGQKRHKILLNNSRTEMKPRPDDNQNVYNCPVCGRQDFATTALLESHLERCHPEFPAKCVPCDLSFKNHRVLNLHRFMIHFAEHSIGNPARNLRNSVVGFDDLTFVDFSSDKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHEIDCGTTNSHARSMDDSQSRRDDFFAGLDLQNKAALTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPENNIKFNPSVGSSGSSGTFSSEYHEEEAQDAFAAEFRKMKLKGEFPCRLCSAIFPNLRALKGHNRAHMGVGSGMPFPCNMCSYTSTDKATLIRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVERSSPRVPKDDVRKSLIYPLERENLQHQTQMHYPPVPMEVRGEIRIIEEAKLHNSTIAMHSASQFEKSDAFSRPGQPMELTQRIVEDGKPGQDVKSDYSKLDDDLESRSSEGSVSLVSDTKSDSHQRIQASPMNLKKGLNVSESTGEDGPLDLSMDVLDLSKKSREKEDSDFLASHEQFGKKDLYSASQLCQLTEALLKAGQGTSQPTSLEALYANAIYRNFNAFPAGVGAGILPPYMFNPHVFGQDFSMKERVRKELVRGLQLTSGGTLVEPPIGAAGFTPFSQSRDLNAQSVTDQTDYAKLMSSKMVNKGLSSRDKPDNLPSSNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQYWSSKPRGGHSTRGRPPSSHPTLLQNLGQPASQVAQPYTNILPKVEPATTTEFPKHPISDQVKYAILAQQLKANKVEENDSEEELVIDEDPQEKDNQESQDQKEKSLLRGQLEGTESVKEATVSEEPKESARDVSEETNVEFIKNEEPVVEETETPIDDEKGAETENSSEEKNLNRAINSEEVEVKNEKMEDGTTDLASVSELLDNASQQYQQFQPQYLSDEEGLVASHSDCNNSGSDEKSDSVNSLNSVNASSKKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCIHCSLLFTTKSNCDRHLLRKHKANPNKMRRVRNSSSPDSQAVINNNNSFSMRNVPERPYKCNKCPSSTFSTLGNLKKHHSTKHARKIKSRSDTPSSEPQNSPRECSKQNNEQSDYDSQSSSVSEGMETSSLPGIPKSAANTSPSTNDTPRSRRPSPRSSPGPSDVPFKCHLCDCGFAERQDCLEHIKVNHKKSYEMLVAKGALDMDIDTVEDQQQLPPQQHASDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPAQPPTITPRSQQQPPVLVAANSGNPRIQDRISLPTVAPVATGDAAPSGLMRFNPYEKLTTLTGKLASIPQNVNPDASESADNDLISNLLGIRDKSFIDRVLQASADDAAKLLGVKHSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00625690;
90% Identity: -
80% Identity: -