Deoh010975.1
Basic Information
- Insect
- Drosophila eohydei
- Gene Symbol
- -
- Assembly
- GCA_035045825.1
- Location
- JAWNOT010000073.1:708247-712352[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0009 0.062 13.8 1.2 1 23 220 243 220 243 0.97 2 12 4.5e-05 0.0031 17.9 2.2 1 23 248 271 248 271 0.97 3 12 3.2e-05 0.0022 18.4 2.9 1 23 276 298 276 298 0.98 4 12 7.1 4.9e+02 1.5 5.6 2 23 305 328 304 328 0.90 5 12 0.00011 0.0073 16.7 0.6 2 23 337 359 337 359 0.95 6 12 0.44 30 5.3 0.2 1 23 365 388 365 388 0.94 7 12 0.26 18 6.0 1.6 5 23 404 423 399 423 0.88 8 12 3e-05 0.002 18.5 0.4 1 23 453 475 453 475 0.98 9 12 2.8e-06 0.00019 21.7 4.2 1 23 481 503 481 503 0.97 10 12 8.8e-06 0.0006 20.1 0.1 2 23 510 531 510 531 0.97 11 12 0.0023 0.16 12.5 1.2 1 23 538 560 538 560 0.98 12 12 0.00025 0.017 15.5 3.8 1 23 566 589 566 589 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCTAGGTGCGATTTCGAAAATGGCAACAACTATTGGCTGGATATGTTTCATCCAACGCGTTGGCAGAGTGAAATGGCACAAATACGCGCAGAGTTTGTCAACTGGAAGTTACAGATCGCACCGAATGATGGACTGCCACAAAAAATTTGTAGCGATTGCTTTTCAAAGTTTTGCTCAGTTTACACGTTTCGCATGGCATGCCAGGACGCACAATTAAAATTGTCGaacatttttgataaaatcGACGCGAATCTGCTGTACGATAGAAATGATGAAGAAATTATAGaagttgatgctgatgatgaacCAGAAGCACGGACGAAAATATGTACAgtaacagaaacagcaacagaaacagaaacagcagcaacaacaacaacaacaacaacaacaatagataATACTGCCATTATTGACGCCAAATCGTCCACGCCCATAAAAATCTTTGTGGAATCAATTAACATTATCGAAACCGAATCCTTGCAACCAGTAGTTGAAGAACCCGATTTAGATTCAGATTATAATTCATTTAGCGTAAGCTATGCTTGTAAATTCTGCTATAAGCCACAAGAAAGCTATGAACTACAGCACCAGTTACTAGAGCACATAAGCGTCTGCCACGATCCGGATCAACCCTACAACTGCCCAGAATGTACTGAATGTTTTCAAGATACCGCATCGCGCACCGTCCACATGAAGAGTGTTCATGTGGTCAAGCACTATGTCTGTGAGGTGTGTGGTAAGAAGTATGGAGATCGCCACAATCTCGACCATCACATTGAGAAGTATCACTCGGAAACGGACTTCGAGTGCAGCATGTGCGAGAAACGTTTCTTTACGCGCAAAAGCCTGCGCTACCACATGAACTGGCACAAGCCGGAGCGTCAGCTCCGATGCCGCCACAGCGGCTGTGACCGGCTTTTCATCAGTCAACGACATCTCAAATGTCATGAGGCAACTCACTCAACGGGCTGTCGTAAGAGCGAGTATTGCGGGATTTGTGGTAAAGCGTTCATACATGTAAAAACCCTACGTTGGCATATCTATCGACAGCATGGCGGCGAGAAGCCCTTTAAATGCGCCATCTGCACTGATGTTTTCGGCTCCTATGTGGAAAAGCGCATTCATATGCTTGAGCGGCACACGGAAAATCTTACCCATCAGCAGCGAAGCGAGTGTATGTTTCAGTCCTGCCACCAAGAGTTTGACCACGAGCAGGAGCTCATCCAGCACATGACCCTAGATCATACACATCGCGAGGCGTCCTCTACTCCAATCATTGCAAACAATAAGCGAGTGATCCAATGCAAACGGGAACGACAGTATACGGGTCTTTTCCAGTGCGGTAGCTGCACTCAGCGTTTCAACATGAAGTCCGCCTTGGAGCGTCACATGGCTGTTCACTCGACGGATCGGCTGCATGCATGTCCGCACTGCTCCAAGCGCTATAAACGTGCTCAGGATCTGAAGTGGCATATGAAGACCCATGTCAATGAAAAGCCCAATGTTTGCGATGTTTGCGGCAAGGCTTTTGCCTTGAAATATGTCCTAACTCAGCATATGCGCAGCCATGAGGTTCTTGAGAAGAATTTCAACTGTGAGACCTGTGGACGGTCGTATCTGTTTGAAAAGTCATTGCGCCTGCATCAACGAGTACATACGGGGAATACATACTACAAATGTGATCTGTGCCAAGAGCGCTTTGTCACCCACatcaaatttaaaaATCATATGAAGAAGGCACATACTGGTAACCAGTCGCTGGATGGTTTGATCAATATTGTGATTAACTAA
- Protein Sequence
- METCRTCARCDFENGNNYWLDMFHPTRWQSEMAQIRAEFVNWKLQIAPNDGLPQKICSDCFSKFCSVYTFRMACQDAQLKLSNIFDKIDANLLYDRNDEEIIEVDADDEPEARTKICTVTETATETETAATTTTTTTTIDNTAIIDAKSSTPIKIFVESINIIETESLQPVVEEPDLDSDYNSFSVSYACKFCYKPQESYELQHQLLEHISVCHDPDQPYNCPECTECFQDTASRTVHMKSVHVVKHYVCEVCGKKYGDRHNLDHHIEKYHSETDFECSMCEKRFFTRKSLRYHMNWHKPERQLRCRHSGCDRLFISQRHLKCHEATHSTGCRKSEYCGICGKAFIHVKTLRWHIYRQHGGEKPFKCAICTDVFGSYVEKRIHMLERHTENLTHQQRSECMFQSCHQEFDHEQELIQHMTLDHTHREASSTPIIANNKRVIQCKRERQYTGLFQCGSCTQRFNMKSALERHMAVHSTDRLHACPHCSKRYKRAQDLKWHMKTHVNEKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFNCETCGRSYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKNHMKKAHTGNQSLDGLINIVIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00545410; iTF_00546824; iTF_00544659; iTF_00554547; iTF_00549717; iTF_00551764; iTF_00479646; iTF_00540544; iTF_00516442; iTF_00595425; iTF_00520808; iTF_00562635; iTF_00589716; iTF_00614365; iTF_00556677; iTF_00553873; iTF_00472525; iTF_00509278; iTF_00523162; iTF_00583905; iTF_00598307; iTF_00608643; iTF_00534020; iTF_00558123; iTF_00575805; iTF_00586143; iTF_00495297; iTF_00511457; iTF_00552482; iTF_00566978; iTF_00593282; iTF_00610082; iTF_00501956; iTF_00528228; iTF_00499749; iTF_00499046; iTF_00500487; iTF_00577224; iTF_00557353; iTF_00596106; iTF_00543915; iTF_00535500; iTF_00497581; iTF_00498318; iTF_00513614; iTF_00518606; iTF_00542606; iTF_00560463; iTF_00576495; iTF_00607248; iTF_00522386; iTF_00525332; iTF_00517141; iTF_00620031; iTF_00521569; iTF_00548993; iTF_00597569; iTF_00558919; iTF_00482421; iTF_00574235; iTF_01549025; iTF_01551905; iTF_01552615; iTF_01550445; iTF_01554132; iTF_01558454; iTF_00530403; iTF_00803812; iTF_00832356; iTF_01322820; iTF_01551172; iTF_00567688; iTF_00490953; iTF_00551049; iTF_00589002; iTF_00547499; iTF_01320619; iTF_00805388; iTF_01557005; iTF_00559662; iTF_00564814; iTF_00583137; iTF_00553189; iTF_00599023; iTF_00616344; iTF_00514330; iTF_01322094; iTF_01326612; iTF_01324315; iTF_00496016; iTF_00473233; iTF_01328049; iTF_01321353; iTF_00617074; iTF_00519379; iTF_00563347; iTF_00529012; iTF_00537684; iTF_00541908; iTF_00599764; iTF_00493842; iTF_00602004; iTF_00585398; iTF_00512885; iTF_01323541; iTF_00478934; iTF_00569163; iTF_00471069; iTF_01325814; iTF_01555575; iTF_00582424; iTF_00531129; iTF_00538406; iTF_00475386; iTF_00508506; iTF_00486011; iTF_00570547; iTF_00510715; iTF_00526747; iTF_00534747; iTF_00901691; iTF_01549723; iTF_01554875; iTF_00476796; iTF_00610844; iTF_00496797; iTF_00572765; iTF_00803037; iTF_01327325; iTF_01559901; iTF_01557723; iTF_00507070; iTF_00561184; iTF_00579456; iTF_01325088; iTF_01559200; iTF_01553406;
- 90% Identity
- -
- 80% Identity
- -