Zind003111.1
Basic Information
- Insect
- Zaprionus indianus
- Gene Symbol
- -
- Assembly
- GCA_018904595.1
- Location
- JAEIHA010000320.1:8497995-8501176[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.97 69 4.1 3.6 1 23 181 207 181 207 0.93 2 13 0.00017 0.012 15.9 0.1 1 23 213 236 213 236 0.97 3 13 5.6e-05 0.004 17.4 3.0 1 23 241 264 241 264 0.95 4 13 0.00048 0.034 14.5 4.3 1 23 269 291 269 291 0.98 5 13 4.1 2.9e+02 2.1 5.8 2 23 298 321 297 321 0.91 6 13 0.00042 0.03 14.7 1.0 3 23 331 352 330 352 0.95 7 13 0.0034 0.24 11.8 0.3 1 23 358 381 358 381 0.95 8 13 0.025 1.8 9.1 0.1 6 23 398 416 392 416 0.93 9 13 1.6e-05 0.0012 19.1 0.8 1 23 445 467 445 467 0.98 10 13 1.2e-05 0.00087 19.5 5.4 1 23 473 495 473 495 0.96 11 13 3.3e-06 0.00024 21.3 0.2 2 23 502 523 502 523 0.97 12 13 0.0028 0.2 12.1 3.7 1 23 530 552 530 552 0.99 13 13 0.00031 0.022 15.1 3.9 1 23 558 581 558 581 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGCCGCACTTGTGCCAAGTGCGATTTTGAAAATGGCAATAACAACTATTGGCTGGACTTGTTTCATCCGAATCGCTGGAAGAGCGAAATGGCGCAAATACGTTTGGAGTTTTTAAACTGGAAGTTACAGATTTCACCCAACGACGGACTACCACAGAAAATATGCAGCGACTGTTTTTCAAAGTTCTGCTCCATTTATACATTTCGTTTGGCCTGCCAGGACGCACAATTGAAGCTGTCGAATATTTTTGACAAAATCGATGCCAACACGTTGTACGACAGAAGTGACGACGAAGCGGAGCTGGTGGAGGAACTGGGACAGAATGATCCTGCTGATGTCGGGAGAACAGACACGCCAACTGAGACAACTGAAACAACAACAACAACACAAAACACTGCCATTATTGAGGCCACAGAGACGCCCATTGAAATCTATGTAGAAACGATAAATATCAACGAAACAGATTCACTGCAATTAGTAGATGAAACAACAGATTTAGTTCCAACAGATTTCAACGAATTGAACATTAGTTATTCGTGTAAATATTGCTACAAAACCGAAGAGTGTTTTGAACAGCAAAATTTTCTGTTGGAGCACATCAGTAGTAAACACGACGCGGACCAACCGTACAACTGCCCCGAGTGCCCAGAGCGCTTTCAGGATGCCGCATCCCGAACTGTGCACATGAAGAGCTCTCACGTAGTCAAGCATTTCATCTGCGAGGTGTGCGGCAAGAAGTATGGGGATCGGCATAACCTGCGACACCATGTGGAGAAATATCACTCGGAAACGGACTTCGAGTGCAGCCTATGTGAGAAGCGCTTCTTCTCACGCAAAAGTCTGCACTACCACATGAACTGGCACAATCCAGAGCGACAGCTAAAGTGTAGACACAATGGCTGCGATAGACTCTTCATCAATCAAAGACATCTCAAGTGTCATGAGGCAACACATACCACAGGCTCCCGGAAGAGCGAATACTGCGGCTTTTGTGGCAAAGCTTTTATACATGTAAAGACCCTACGCTGGCATATCTATCGACAACACGGAGGGGAGAAACCGTTTAAATGCGCTATATGCACAGAGGTCTTTGCATCATATTTCGAGAAACGAATTCACATGCTGGAGCTGCATACTGAAAATCTGACTCATCAAGAGCGCAGTGAATGCATGTATCAGGCATGTCGCCAGGAGTTCGATAACGAACAGGATCTCATCCGTCATATGGAAACAGACCACCTGCAGAGAGGACCTGCAACGCCCATTATTGCAAATAATAAAAGAGTTCTTCAGCGCAAACAGGAGAGAAAGTTTACAGGTCTCTTCCAGTGCAGTAGCTGCACCCAGCGCTTTAATATGAAGTCAGCCCTGGAGCGTCACATGGCCGTACACTCGGCTGATCGTTTACACGCCTGCACTCACTGCTCTAAGCGATATAAGCGTGCCCAGGATCTAAAGTGGCACATGAAGACACATGCTAACGAGAAGCCCAATGTTTGTGATGTCTGTGGCAAATCCTTTGCGCTGAAATATGTACTCACCCAGCACATGCGAAGTCATGAAGTTCTTGAAAAGAATTTCAAATGTGAGACATGTGGACGATGCTATCTGTTCGAGAAGTCGCTTCGCCTTCATCAACGTGTCCACACTGGAAATACTTACTATAAATGTGACTTGTGCCAGGAACGTTTTGTGACGCACATCAAGTTTAAAACTCATATGAAGAAAGCACATGACACCAACCAGTCCCATGATAATGATTCGCTTGAAGGTTTAATCAACATTGTGATTTCTTAA
- Protein Sequence
- METCRTCAKCDFENGNNNYWLDLFHPNRWKSEMAQIRLEFLNWKLQISPNDGLPQKICSDCFSKFCSIYTFRLACQDAQLKLSNIFDKIDANTLYDRSDDEAELVEELGQNDPADVGRTDTPTETTETTTTTQNTAIIEATETPIEIYVETININETDSLQLVDETTDLVPTDFNELNISYSCKYCYKTEECFEQQNFLLEHISSKHDADQPYNCPECPERFQDAASRTVHMKSSHVVKHFICEVCGKKYGDRHNLRHHVEKYHSETDFECSLCEKRFFSRKSLHYHMNWHNPERQLKCRHNGCDRLFINQRHLKCHEATHTTGSRKSEYCGFCGKAFIHVKTLRWHIYRQHGGEKPFKCAICTEVFASYFEKRIHMLELHTENLTHQERSECMYQACRQEFDNEQDLIRHMETDHLQRGPATPIIANNKRVLQRKQERKFTGLFQCSSCTQRFNMKSALERHMAVHSADRLHACTHCSKRYKRAQDLKWHMKTHANEKPNVCDVCGKSFALKYVLTQHMRSHEVLEKNFKCETCGRCYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKTHMKKAHDTNQSHDNDSLEGLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502704;
- 90% Identity
- iTF_01553406;
- 80% Identity
- -