Basic Information

Insect: Drosophila sordidula
Gene Symbol: -
Assembly: GCA_035047465.1
Location: JAWNPQ010000219.1:292602-298306[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.8 5.7e+02 1.2 1.8 3 16 57 70 56 72 0.84

2 14 4.8 3.1e+02 2.1 1.3 1 23 169 195 169 195 0.76

3 14 0.00024 0.015 15.6 0.7 1 23 201 224 201 224 0.97

4 14 1.6e-05 0.001 19.3 2.0 1 23 229 252 229 252 0.96

5 14 0.00029 0.019 15.3 4.8 1 23 257 279 257 279 0.98

6 14 5.3 3.4e+02 1.9 5.7 2 23 286 309 285 309 0.90

7 14 0.0001 0.0067 16.7 0.6 2 23 318 340 318 340 0.95

8 14 0.0022 0.14 12.6 0.1 1 23 346 369 346 369 0.95

9 14 0.13 8.2 7.0 0.1 6 23 386 404 380 404 0.92

10 14 2.9e-05 0.0019 18.5 0.4 1 23 433 455 433 455 0.98

11 14 1.4e-05 0.00092 19.5 5.3 1 23 461 483 461 483 0.96

12 14 8.5e-06 0.00055 20.2 0.1 2 23 490 511 490 511 0.97

13 14 0.0031 0.2 12.1 3.7 1 23 518 540 518 540 0.99

14 14 0.00034 0.022 15.1 3.9 1 23 546 569 546 569 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.8	5.7e+02	1.2	1.8	3	16	57	70	56	72	0.84
2	14	4.8	3.1e+02	2.1	1.3	1	23	169	195	169	195	0.76
3	14	0.00024	0.015	15.6	0.7	1	23	201	224	201	224	0.97
4	14	1.6e-05	0.001	19.3	2.0	1	23	229	252	229	252	0.96
5	14	0.00029	0.019	15.3	4.8	1	23	257	279	257	279	0.98
6	14	5.3	3.4e+02	1.9	5.7	2	23	286	309	285	309	0.90
7	14	0.0001	0.0067	16.7	0.6	2	23	318	340	318	340	0.95
8	14	0.0022	0.14	12.6	0.1	1	23	346	369	346	369	0.95
9	14	0.13	8.2	7.0	0.1	6	23	386	404	380	404	0.92
10	14	2.9e-05	0.0019	18.5	0.4	1	23	433	455	433	455	0.98
11	14	1.4e-05	0.00092	19.5	5.3	1	23	461	483	461	483	0.96
12	14	8.5e-06	0.00055	20.2	0.1	2	23	490	511	490	511	0.97
13	14	0.0031	0.2	12.1	3.7	1	23	518	540	518	540	0.99
14	14	0.00034	0.022	15.1	3.9	1	23	546	569	546	569	0.98

Sequence Information

Coding Sequence: ATGGAAACGTGTCGCACTTGTGCCAGGTGCGATTTCGAAAATGGCAACAACTATTGGCTGGACTTGTTCCATCCAACGCGTTGGCAGAGCGAAATGGCGCAAATACGCCTGGAGCTTGTCAACTGGAAGTTACAGATCTCACCAAACGATGGACTGCCACAGAAAATATGTAGCGATTGCTTCACAAAATTCTGCTCCATTTACACGTTTCGTATATCCTGCCAGGACGCGCAGTTAAAGTTGTCGAATATTTTCGACAAGATCGATGCCAATTTGCTCTATGACAAAAACGATGAGGAGGACCACATTGAAGAGGACACCGATGAAATAGAAATAGCGAAagcaacgacgacaacaacaacacaagacACTGCCACTATTGAGGCCACAACGCCAACGCCCATAGAAATCTTTGTGGAAACGATTAGCATCAACGAACCCGACTCCTTGCAACTAGACGACACAACTGATTTAACTTCCGATTATAATTCGCTGAACATTAGCTACGCTTGTAAATTCTGTCACAAGCCAGAGGAGAGCTACGAGTTGCAGCATTTGCTGCTGGAGCACATTAGCAATTCACACGACCCGGACCAGCCATACAATTGTCCGGAGTGCACGGAATGTTTCCAAGACGCCGCCTCGCGCACGGTGCACATGAAGAGCGTGCACGTGATCAAGCACTACGCCTGCGACGTGTGCGGCAAAAAGTATGGGGATCGTCACAATCTTGAGCATCACATCGAGAAATACCACTCGGAGACGGACTTCGAATGCACTATGTGCGAGAAGCGTTTCTTCACGCGGAAGAGCCTGCACTATCACATGAACTGGCACAAGCCGGAACGCCAGCTCAGGTGTCGCCACAGCGGCTGCGACAGGCTGTTCATCAACCAGCGACATCTCAAGTGTCACGAAGCAACCCACTCAACGGGCTCCCGCAAGAGCGAATACTGCGGCATTTGCGGTAAAGCTTTCATACATGTGAAAACTCTGCGCTGGCACATCTATCGACAGCACGGCGGCGAGAAGCCCTTCAAATGCGCCATCTGCACTGAGGTGTTTGCCTCCTATGCGGAAAAGCGGATACACATGCTCGAGGCGCATACGGAAAACCTGACGCATCAGGAGCGCAGCGAGTGCATGTTTCAGGCCTGCCGACGGGAGTTCGACAGCGAACAGGAGCTCATCCAGCACATGAGTGTCGAGCATATGCAGCGGGAACCGGCCGCCCCGATCATTGCGAATAATAAGCGCGTGCTCCAGCGCAAGCGGGAGCGCCAGTATACGGGTCTCTTTCAGTGCGGCAGCTGCACGCAACGCTTCAACATGAAGTCGGCCCTGGAGCGCCATATGGCTGTGCACTCGGCCGATCGGCTGCACGCCTGCAGCCACTGCTCCAAGCGCTACAAACGTGCCCAGGACCTCAAGTGGCACATGAAGACCCATGTCAATGAGAAGCCCAACGTGTGCGATGTGTGCGGCAAGGCCTTTGCCCTCAAATACGTTCTCACCCAGCATATGCGCAGTCATGAGGTTCTCGAGAAGAACTTCAAGTGCGAGACCTGCGGACGTTGCTATCTGTTCGAGAAGTCGCTGCGACTGCATCAACGCGTCCACACGGGCAACACCTACTACAAATGCGATCTGTGCCAGGAGCGTTTTGTCAcgcacattaaatttaaaaCTCACATGAAAAAGGCACATGATAGCAGCCAGACGCACGCCAAAGATACGCTGGATGATTTGATCAATATTGTGATTTCCTAA
Protein Sequence: METCRTCARCDFENGNNYWLDLFHPTRWQSEMAQIRLELVNWKLQISPNDGLPQKICSDCFTKFCSIYTFRISCQDAQLKLSNIFDKIDANLLYDKNDEEDHIEEDTDEIEIAKATTTTTTQDTATIEATTPTPIEIFVETISINEPDSLQLDDTTDLTSDYNSLNISYACKFCHKPEESYELQHLLLEHISNSHDPDQPYNCPECTECFQDAASRTVHMKSVHVIKHYACDVCGKKYGDRHNLEHHIEKYHSETDFECTMCEKRFFTRKSLHYHMNWHKPERQLRCRHSGCDRLFINQRHLKCHEATHSTGSRKSEYCGICGKAFIHVKTLRWHIYRQHGGEKPFKCAICTEVFASYAEKRIHMLEAHTENLTHQERSECMFQACRREFDSEQELIQHMSVEHMQREPAAPIIANNKRVLQRKRERQYTGLFQCGSCTQRFNMKSALERHMAVHSADRLHACSHCSKRYKRAQDLKWHMKTHVNEKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFKCETCGRCYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKTHMKKAHDSSQTHAKDTLDDLINIVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00502704;
90% Identity: iTF_00530403;
80% Identity: -