Drel014024.1
Basic Information
- Insect
- Drosophila rellima
- Gene Symbol
- -
- Assembly
- GCA_035043635.1
- Location
- JAWNMV010000811.1:16769437-16773389[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00031 0.021 15.3 1.0 1 23 203 226 203 226 0.97 2 12 5.2e-05 0.0036 17.7 2.7 1 23 231 254 231 254 0.95 3 12 0.00042 0.029 14.8 4.5 1 23 259 281 259 281 0.98 4 12 5.3 3.7e+02 1.9 5.7 2 23 288 311 287 311 0.90 5 12 0.00047 0.033 14.7 1.0 3 23 321 342 320 342 0.95 6 12 0.0022 0.16 12.6 0.1 1 23 348 371 348 371 0.95 7 12 0.35 24 5.7 0.1 5 23 387 406 382 406 0.86 8 12 6.8e-06 0.00048 20.5 0.3 1 23 435 457 435 457 0.98 9 12 1.4e-05 0.001 19.5 5.3 1 23 463 485 463 485 0.96 10 12 8.6e-06 0.0006 20.2 0.1 2 23 492 513 492 513 0.97 11 12 0.00071 0.049 14.1 1.5 1 23 520 542 520 542 0.99 12 12 0.00034 0.024 15.1 3.9 1 23 548 571 548 571 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACTTGTGCAAAGTGCGATTTcgaaaatggcaacaacaactattattGGCTGGACTTGTTCCATCCAACCCGTTGGCAGCGTGAAATGGCCCAAATTCGCATGGAGTTTGTTAACTGGAAGTTACTGATCTCACCCAACGATGGACTGCCACAGAAAATATGCAGCGATTGCTTTACTAAATTCTGCTCCATTTACACATTTCGCATGGCCTGTCAGGATGCGCAATTAAAGCTGtcgaatatttttgataaaatcgATGCCAGCATACTGTATGACAAAACTGAAGAAGACCAAGTCGATGAGGATGAGGGAACAGATGCGATaacagagacaacaacaacaacaacaacacaaaacactGCCATTATTGAGGCCAAATCGCCAACGCCCATAGAAATCTATGTGGAAACGATAAACATCAACGAAACACAAGCCTTGCAATTGGACAAGGGAGATGAGAATTGCTCAACAGATTTCAGCTCGTTGAGCATCACGTATGCGTGTAAGTTTTGCTACAAGCCACAGGAGAGCTATGAACTGCAGCATATGCTTTTGGAGCACATCAGTAGCGCCCATGATCCGGATCAGCCATACAACTGTCCGGAGTGCACCGAATGTTTCCAAGATGCCGCCTCTCGTACCGTGCACATGAAGAGCTCCCATGTCGTTAAGCACTACGCCTGCGATGTGTGCGGCAAAAAGTACGGCGATCGTCATAATTTACGCCATCATGTTGAGAAATATCACTCGGAAACGGACTTCGAGTGCAGTCTGTGCGAGAAGCGTTTCTTTACCCGCAAAAGTTTGCACTACCACATGAATTGGCACAAGCCGGAGCGTCAGTTGAGATGCAGACACAGCGGTTGCGATAGATTGTTCATCAATCAGCGACATCTCAAGTGTCACGAAGCGACGCACACCACGGGATCCCGAAAGAGTGAATATTGCGGTTTTTGTGGCAAAGCTTTCATACATGTAAAAACCTTACGCTGGCATATCTATAGACAACACGGCGGGGAGAAGCCTTTTAAATGTGCCATTTGCACTGAGGTTTTTGCCTCTTATGCTGAGAAACGCATCCATATGCTAGAGTTGCATACGGAAAATCTGACACATCAGGAACGCAGCGAGTGCATGTTCCAGTCCTGCCGCCAGGAATTCGATACCGAGCAGGACCTCATCCAGCACATGGCTGCTGAGCATCTGCAGCGCGAGCCAGCAGCTCCAATCATTGCCAACAATAAGCGGGTCCTTCAGCGGAAGCGGGAGCGACAATATACGGGACTTTTCCAGTGCGACAGTTGCCCACAGCGCTTCAATATGAAGTCGGCCCTGGAACGCCACATGGCAGTGCACTCGACCGATCGGTTGCACGCCTGTTCCCACTGCTCCAAGCGCTATAAGCGTGCCCAGGACTTGAAGTGGCATATGAAGACACATGCCAATGAGAAACCCAATGTTTGTGATGTTTGTGGCAAagcatttgctttaaaatatgtGCTAACTCAGCATATGCGTAGTCACGAGGTTCTTGAGAAGAACTTCAAGTGTGAGACCTGTGGACGTTCCTATCTATTTGAGAAGTCGCTTCGTCTACATCAACGCGTTCACACCGGCAATACTTACTATAAATGCGATTTGTGTCAAGAACGATTTGTGACTCATATCaagtttaaaaCTCACATGAAGAAGGCACACGACGATACAAGCCAGTCCCATACTAAGGACTCGGTGGATGATTTGATCAGCATTGTGATTTCCTAA
- Protein Sequence
- METCRTCAKCDFENGNNNYYWLDLFHPTRWQREMAQIRMEFVNWKLLISPNDGLPQKICSDCFTKFCSIYTFRMACQDAQLKLSNIFDKIDASILYDKTEEDQVDEDEGTDAITETTTTTTTQNTAIIEAKSPTPIEIYVETININETQALQLDKGDENCSTDFSSLSITYACKFCYKPQESYELQHMLLEHISSAHDPDQPYNCPECTECFQDAASRTVHMKSSHVVKHYACDVCGKKYGDRHNLRHHVEKYHSETDFECSLCEKRFFTRKSLHYHMNWHKPERQLRCRHSGCDRLFINQRHLKCHEATHTTGSRKSEYCGFCGKAFIHVKTLRWHIYRQHGGEKPFKCAICTEVFASYAEKRIHMLELHTENLTHQERSECMFQSCRQEFDTEQDLIQHMAAEHLQREPAAPIIANNKRVLQRKRERQYTGLFQCDSCPQRFNMKSALERHMAVHSTDRLHACSHCSKRYKRAQDLKWHMKTHANEKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFKCETCGRSYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKTHMKKAHDDTSQSHTKDSVDDLISIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502704;
- 90% Identity
- iTF_00507070;
- 80% Identity
- -