Basic Information

Insect: Scaptomyza montana
Gene Symbol: -
Assembly: GCA_018904305.1
Location: JAEIGR010000001.1:2195884-2199058[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.3 7.1e+02 1.1 1.9 3 16 35 48 34 50 0.84

2 14 8.8 6.8e+02 1.2 2.7 1 23 144 170 144 170 0.81

3 14 0.00014 0.011 16.3 0.6 1 23 176 199 176 199 0.97

4 14 1.3e-05 0.00097 19.6 2.5 1 23 204 227 204 227 0.96

5 14 0.00038 0.029 14.9 4.5 1 23 232 254 232 254 0.98

6 14 4.8 3.7e+02 2.0 5.7 2 23 261 284 260 284 0.90

7 14 0.00017 0.013 16.0 1.5 3 23 294 315 293 315 0.95

8 14 0.0075 0.57 10.9 0.2 1 23 321 344 321 344 0.95

9 14 0.52 40 5.1 0.2 5 23 360 379 355 379 0.86

10 14 2.7e-05 0.0021 18.5 0.4 1 23 408 430 408 430 0.98

11 14 1.3e-05 0.00099 19.5 5.3 1 23 436 458 436 458 0.96

12 14 3.4e-06 0.00026 21.4 0.2 2 23 465 486 465 486 0.97

13 14 0.00064 0.049 14.2 1.5 1 23 493 515 493 515 0.99

14 14 0.00045 0.035 14.7 3.4 1 23 521 544 521 544 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.3	7.1e+02	1.1	1.9	3	16	35	48	34	50	0.84
2	14	8.8	6.8e+02	1.2	2.7	1	23	144	170	144	170	0.81
3	14	0.00014	0.011	16.3	0.6	1	23	176	199	176	199	0.97
4	14	1.3e-05	0.00097	19.6	2.5	1	23	204	227	204	227	0.96
5	14	0.00038	0.029	14.9	4.5	1	23	232	254	232	254	0.98
6	14	4.8	3.7e+02	2.0	5.7	2	23	261	284	260	284	0.90
7	14	0.00017	0.013	16.0	1.5	3	23	294	315	293	315	0.95
8	14	0.0075	0.57	10.9	0.2	1	23	321	344	321	344	0.95
9	14	0.52	40	5.1	0.2	5	23	360	379	355	379	0.86
10	14	2.7e-05	0.0021	18.5	0.4	1	23	408	430	408	430	0.98
11	14	1.3e-05	0.00099	19.5	5.3	1	23	436	458	436	458	0.96
12	14	3.4e-06	0.00026	21.4	0.2	2	23	465	486	465	486	0.97
13	14	0.00064	0.049	14.2	1.5	1	23	493	515	493	515	0.99
14	14	0.00045	0.035	14.7	3.4	1	23	521	544	521	544	0.97

Sequence Information

Coding Sequence: ATGGAAACGTTGCGTTGGCAGAGCGAAATGGTGCAAATTCGTTTAGAGTTCGTCAACTGGAAGTTACAGATCTCACCTAACGATGGACTGCCACAAAAAATATGTAGCGATTGTTTTACAAAATTTTGCTCCATTTACACATTTCGCATGGCCTGTCAGGATGCTCAATTAAAGCTTTCAAATATTTTTGATAAAATCGATGCCCATATGCTGTATGACAAAAATGAAGAAGAGCGCAATGTAGAAGATACCAATCAAATAGAAACAACGACAACAACAATACAAAACACTGCCATTACAGAGGCCACATCGCCAGCGCCCATAGAAATATATGTGGAAACCATAAATATCAACGAAACTGATGAATCCTTAGCACAAGTCGATGAGCAAGCGGATTCACCTTCAGATTACAGCACATTGAACATTAGCTATGCTTGTAAATTTTGCCACAAGCCACAGGAAAGCTATGAACTGCAGCATATGCTTCTAGAGCACATCAGTAGTGCACACGATCCGGATCAGCCCTACAACTGTCCCGACTGCACAGAATGCTTCCAGGATGCTGCTTCACGTACCGTGCACATGAAAAGCGCTCATGTCGTTAAACACTATGCTTGCGATGTGTGCGGCAAAAAGTATGGAGATCGTCACAATCTTCAGCATCACATAGAGAAATATCATTCGGAAACGGATTTCGAGTGCAGCTTGTGTGAGAAGCGTTTCTTTACACGCAAAAGCCTGCATTACCACATGAACTGGCATAAACCGGAGCGACAACTAAGATGTCGACACAGTGGCTGTGACAGGCTGTTTATTAATCAACGACATCTTAAATGTCATGAAGCAACTCACACAACCGGCTCCCGAAAGAGTGAATACTGCGGTTTTTGTGGCAAAGCTTTTACACATGTTAAAACTCTACGTTGGCATATATATAGACAGCATGGTGGTGAGAAGCCTTTTAAATGTGCCATTTGCACTGCGGTTTTTGACTCGTATGCTGAAAAGCGTACTCACATGCTTGAGTTGCATACCGAAAATCTAACGCATCAGGAGCGCAGCGAGTGCATGTTCCAATCGTGTCGCCAGGAGTTTGAAAGCGAACAGGAGCTTATACAGCATATGACTGCCGAGCATCTGCAGCGTGAACCTCCAGCTCCAGTTATTGCAAATAATAAACGTGTGCTCCAAAGAAAGCGGGAACGCCAATACACGGGTCTCTTTCAATGCGGAAGTTGCTCGCAAAGATTCAACATGAAATCAGCACTGGAGCGGCACATGGCGGTGCATTCAGCTGATCGACTGCATGCCTGTAGTCACTGTTCCAAGCGCTACAAGCGTGCCCAGGATTTGAAGTGGCATATGAAGACTCATGCCAGTGAGAAGCCAAATGTTTGTGATGTTTGTGGCAAGTCATTTGCCCTGAAATATGTTCTAACCCAGCATATGCGCAGTCATGAGGTTCTTGAGAAGAACTTCAAGTGTGAAACCTGTGGACGTTCATATTTATTTGAGAAGTCTCTGCGTCTCCATCAACGTGTGCACACGGGCAACACTTACTACAAGTGCGATTTGTGCCAGGAGCGTTTTGTGACTCACATTAAATTTAAAACTCATATGAAAAATGCACATGATGCAAACCAGTTGCATACCAAAGATTCGCTGGATGATTTGATCAACATTGTGATTTCCTAA
Protein Sequence: METLRWQSEMVQIRLEFVNWKLQISPNDGLPQKICSDCFTKFCSIYTFRMACQDAQLKLSNIFDKIDAHMLYDKNEEERNVEDTNQIETTTTTIQNTAITEATSPAPIEIYVETININETDESLAQVDEQADSPSDYSTLNISYACKFCHKPQESYELQHMLLEHISSAHDPDQPYNCPDCTECFQDAASRTVHMKSAHVVKHYACDVCGKKYGDRHNLQHHIEKYHSETDFECSLCEKRFFTRKSLHYHMNWHKPERQLRCRHSGCDRLFINQRHLKCHEATHTTGSRKSEYCGFCGKAFTHVKTLRWHIYRQHGGEKPFKCAICTAVFDSYAEKRTHMLELHTENLTHQERSECMFQSCRQEFESEQELIQHMTAEHLQREPPAPVIANNKRVLQRKRERQYTGLFQCGSCSQRFNMKSALERHMAVHSADRLHACSHCSKRYKRAQDLKWHMKTHASEKPNVCDVCGKSFALKYVLTQHMRSHEVLEKNFKCETCGRSYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKTHMKNAHDANQLHTKDSLDDLINIVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00502704;
90% Identity: iTF_01322820;
80% Identity: -