Dnav005363.1
Basic Information
- Insect
- Drosophila navojoa
- Gene Symbol
- -
- Assembly
- GCA_001654015.2
- Location
- NW:78951-83706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.8 4.5e+02 1.1 2.0 3 16 57 70 56 72 0.84 2 13 0.00073 0.042 13.8 1.2 1 23 207 230 207 230 0.97 3 13 7.4e-05 0.0042 16.9 2.0 1 23 235 258 235 258 0.96 4 13 0.00026 0.015 15.2 4.6 1 23 263 285 263 285 0.98 5 13 4.2 2.4e+02 2.0 4.5 2 23 292 315 291 315 0.89 6 13 0.00038 0.022 14.7 1.0 3 23 325 346 324 346 0.95 7 13 0.003 0.17 11.9 0.1 1 23 352 375 352 375 0.95 8 13 0.063 3.6 7.7 0.3 5 23 391 410 386 410 0.90 9 13 1.5e-05 0.00085 19.1 0.8 1 23 440 462 440 462 0.98 10 13 1.2e-05 0.00068 19.5 5.3 1 23 468 490 468 490 0.96 11 13 7.1e-06 0.00041 20.1 0.1 2 23 497 518 497 518 0.97 12 13 0.00096 0.055 13.4 0.9 1 23 525 547 525 547 0.99 13 13 0.00028 0.016 15.1 3.9 1 23 553 576 553 576 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCAAGGTGCGATTTCgaaaatggcaacaattaTTGGCTGGATATGTTTCATCCAACGCGCTGGCAGAGTGAAATGGCGCAAATTCGCGCAGAGTTTGTTAACTGGAAATTACAGATCTCTCCAAACGATGGACTCCCACAAAAAATTTGTAGCGATTGCTTTACAAAGTTCTGTTCCGTTTACACGTTTCGCATTGCTTGCCAGGACGCACAATTAAAGCTTTcgaatatttttgataaaatcGATGCTAACTTACTATATGATAGACATGAAGAAAGCATTGAAGTTGAAGCTCATGATTCAGAAGCaacaacgaaaatatatacagtagcagaaacagcaacaacgacaacaacagagaCCACTGCCATTAATGCGGACAAATCGCCCGCGCCCATTGAAATCTTTGTGGAAACCATTAGTATTAACGAAAGCGAATCCTTGCAGGCAGAAGATAAAGAAGCCAACTTAGGCTCAGattgtaatttattgaatataagcTATGCTTGCAAGTTCTGTTACAAGCCGCAAGAAAGCTACGAGCTACAGCATTTGTTACTAGAGCACATCAGCGTCTGCCACGATCCAGATCAACCCTACAACTGCCCGGAGTGCACTGAATGTTTTCAAGACACAGCATCGCGTACCGTCCACATGAAGAGCGTTCATGTAGTCAAGCACTATGCCTGTGAAGTTTGCGGTAAAAAGTACGGAGACCGCCACAATCTCGACCATCACATCGAGAAGTACCACTCGGACACGGACTTCGAGTGCAGCATGTGCGAGAAGCGATTTTTTACGCGCAAAAGCCTCCACTACCACATGAACTGGCACAAGCCGGAGCGTCAGCTCCGATGTCGTCACAACGGCTGTGACCGGCTGTTCATCAATCAACGACATCTCATATGTCACGAGGCCACCCACACAAAGGGCTCCCGTAAGAGCGAGTATTGTGGCTTTTGTGGTAAAGCATTCATACATGTAAAAACCCTTCGTTGGCATATCTATCGACAGCATGGCGGAGAGAAGCCTTTCAAATGTGCCATCTGTACTGAGGTGTTTGCCTCCTATGTGGAGAAGCGCATTCATATGCTTGAGATGCACACCGAAAATCTGACGCATCAGGAGCGTAGCGAGTGTATGTTTCAGTCCTGTCGCCAGGAGTTTGATACGGAGCAGGAGCTCATCCAACACATGACCACGGAGCATGCTCAGCGTGAGAGTTCCTCAGCTCCGATCATTGCCAACAATAAGCGAGTGATCCAGTGCAAACGGGAACGACAATATACGGGACTCTTtcagtgcagcagctgcactcaACGTTTCAACATGAAGTCCGCCTTGGAGCGTCACATGGCTGTCCACTCAACGGATCGGCTGCATGCCTGCTCGCACTGCTCCAAGCGCTATAAGCGTGCTCAGGATCTTAAGTGGCATATGAAGACCCATGCCAATGTAAAGCCTAATGTGTGCGATGTATGCGGCAAAGCTTTTGCCTTGAAATATGTCTTGACTCAGCATATGCGAAGTCATGAAGTTCTTGAGAAGAATTTCAAGTGTGAGACCTGTGGACGGGCGTATTTGTTCGAGAAGTCATTACGGTTGCATCAACGTGTACACACAGGCAATACCTATTATAAATGCGATCTGTGCCAAGAGCGATTTGTCActcatatcaaatttaaaaCTCACATGAAGAAGGCACATGATGGCGACCAGTCGCATTCAAAGGATACGCTGGATGATTTGATCAATATTGTGATTAACTAA
- Protein Sequence
- METCRTCARCDFENGNNYWLDMFHPTRWQSEMAQIRAEFVNWKLQISPNDGLPQKICSDCFTKFCSVYTFRIACQDAQLKLSNIFDKIDANLLYDRHEESIEVEAHDSEATTKIYTVAETATTTTTETTAINADKSPAPIEIFVETISINESESLQAEDKEANLGSDCNLLNISYACKFCYKPQESYELQHLLLEHISVCHDPDQPYNCPECTECFQDTASRTVHMKSVHVVKHYACEVCGKKYGDRHNLDHHIEKYHSDTDFECSMCEKRFFTRKSLHYHMNWHKPERQLRCRHNGCDRLFINQRHLICHEATHTKGSRKSEYCGFCGKAFIHVKTLRWHIYRQHGGEKPFKCAICTEVFASYVEKRIHMLEMHTENLTHQERSECMFQSCRQEFDTEQELIQHMTTEHAQRESSSAPIIANNKRVIQCKRERQYTGLFQCSSCTQRFNMKSALERHMAVHSTDRLHACSHCSKRYKRAQDLKWHMKTHANVKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFKCETCGRAYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKTHMKKAHDGDQSHSKDTLDDLINIVIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502704;
- 90% Identity
- iTF_00573493;
- 80% Identity
- -