Basic Information

Insect: Scaptomyza flava
Gene Symbol: -
Assembly: GCA_003952975.1
Location: RKRM01000115.1:48545-52348[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.3 6.3e+02 1.1 1.9 3 16 58 71 57 73 0.84

2 14 8.2 6.3e+02 1.1 2.8 1 23 167 193 167 193 0.81

3 14 0.00013 0.0096 16.2 0.6 1 23 199 222 199 222 0.97

4 14 1.1e-05 0.00087 19.5 2.5 1 23 227 250 227 250 0.96

5 14 0.00034 0.026 14.9 4.5 1 23 255 277 255 277 0.98

6 14 4.3 3.3e+02 1.9 5.7 2 23 284 307 283 307 0.90

7 14 0.00015 0.012 16.0 1.5 3 23 317 338 316 338 0.95

8 14 0.024 1.8 9.0 0.2 1 23 344 367 344 367 0.95

9 14 0.46 35 5.0 0.2 5 23 383 402 378 402 0.86

10 14 2.4e-05 0.0019 18.5 0.4 1 23 431 453 431 453 0.98

11 14 1.2e-05 0.00088 19.5 5.3 1 23 459 481 459 481 0.96

12 14 3e-06 0.00023 21.3 0.2 2 23 488 509 488 509 0.97

13 14 0.00057 0.043 14.2 1.5 1 23 516 538 516 538 0.99

14 14 0.0004 0.031 14.6 3.4 1 23 544 567 544 567 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.3	6.3e+02	1.1	1.9	3	16	58	71	57	73	0.84
2	14	8.2	6.3e+02	1.1	2.8	1	23	167	193	167	193	0.81
3	14	0.00013	0.0096	16.2	0.6	1	23	199	222	199	222	0.97
4	14	1.1e-05	0.00087	19.5	2.5	1	23	227	250	227	250	0.96
5	14	0.00034	0.026	14.9	4.5	1	23	255	277	255	277	0.98
6	14	4.3	3.3e+02	1.9	5.7	2	23	284	307	283	307	0.90
7	14	0.00015	0.012	16.0	1.5	3	23	317	338	316	338	0.95
8	14	0.024	1.8	9.0	0.2	1	23	344	367	344	367	0.95
9	14	0.46	35	5.0	0.2	5	23	383	402	378	402	0.86
10	14	2.4e-05	0.0019	18.5	0.4	1	23	431	453	431	453	0.98
11	14	1.2e-05	0.00088	19.5	5.3	1	23	459	481	459	481	0.96
12	14	3e-06	0.00023	21.3	0.2	2	23	488	509	488	509	0.97
13	14	0.00057	0.043	14.2	1.5	1	23	516	538	516	538	0.99
14	14	0.0004	0.031	14.6	3.4	1	23	544	567	544	567	0.97

Sequence Information

Coding Sequence: ATGGAAACGTGTCGCACTTGTGCAAGGTGCGATTTcgaaaatggcaacaacaactattggCTGGACTTGTTCCATCCAGTGCGTTGGCAGAGCGAAATGGTGCAAATTCGTTTAGAGTTCGTCAACTGGAAGTTACAGATCTCACCTAACGATGGACTgccacaaaaaatatgtagcgattgttttacaaaattttgctCCATTTACACATTTCGCATGGCCTGTCAGGATGCTCAATTAAagctttcaaatatttttgataaaatCGATGCCCATATGCTGTATGACAAGAATGAAGAAGAGCGCAATGTAGAAGATGCAAATGAAATagaaacaacgacaacaacaatacaaaacacTGCCATTACAGAGGCCACATCGCCAACGCCCATAGAAATATATGTGGAAACCATAAATATCAACGAAACTGATGAATCCTTAGCACAAGTCGATGAGCAAGCGGATTCACCTTCAGATTACAGCACATTGAACATTAGCTATGCTTGTAAATTTTGCCACAAGCCACAGGAGAGCTATGAACTGCAGCATATGCTTCTAGAGCACATCAGTAGTGCACACGATCCGGATCAGCCCTACAACTGTCCCGATTGCACAGAATGCTTCCAGGATGCTGCTTCACGTACCGTGCACATGAAAAGCGCTCATGTCGTTAAACACTATGCTTGCGATGTGTGCGGCAAAAAGTATGGAGATCGTCACAATCTTCAGCATCACATAGAGAAATATCATTCGGAAACGGATTTCGAGTGCAGCTTGTGTGAGAAGCGTTTCTTTACACGCAAAAGCCTGCATTACCACATGAACTGGCATAAACCGGAGCGACAACTAAGATGCCGACACAGTGGCTGTGACCGGCTGTTTATTAATCAACGACATCTTAAATGTCATGAAGCAACTCACACAACCGGCTCCCGAAAGAGTGAATACTGCGGTTTTTGTGGCAAAGCTTTTACACATGTTAAAACTCTACGTTGGCATATATATAGACAGCATGGTGGTGAGAAGCCTTTTAAATGTGCAATTTGCACTTCGGTTTTCGACTCGTATGCTGAAAAACGTATTCACATGCTTGAGTTGCATACCGAAAATCTAACGCATCAGGAGCGCAGCGAGTGCATGTTCCAATCGTGTCGCCAGGAGTTTGAAAGCGAACAGGAGCTTATACAGCACATGACTGCCGAGCATCTGCAGCGTGAACCTCCAGCTCCAGTTATTGCAAATAATAAACGTGTGCTCCAAAGAAAGCGGGAACGCCAATATACGGGTCTCTTTCAATGCGGAAGCTGCTCGCAAAGATTCAACATGAAATCAGCACTGGAGCGGCACATGGCGGTGCATTCAGCGGATCGACTGCACGCCTGCAGTCACTGTTCCAAGCGCTACAAGCGTGCCCAGGATTTGAAGTGGCATATGAAGACTCATGCCAGTGAGAAGCCAAATGTTTGTGATGTTTGTGGCAAGTCATTTGCCCTGAAATATGTTCTAACCCAGCATATGCGCAGTCATGAGGTTCTTGAGAAGAACTTCAAGTGTGAAACCTGTGGACGTTCATATTTATTTGAGAAGTCTCTCCGTCTCCATCAACGTGTGCACACGGGCAACACTTACTACAAATGCGATTTGTGCCAGGAGCGTTTTGTGACtcacattaaatttaaaaCTCATATGAAAAATGCACATGATGCAAACCAGTTGCATACCAAAGATTCGCTGGATGATTTGATCAACATTGTGATTTCCTAA
Protein Sequence: METCRTCARCDFENGNNNYWLDLFHPVRWQSEMVQIRLEFVNWKLQISPNDGLPQKICSDCFTKFCSIYTFRMACQDAQLKLSNIFDKIDAHMLYDKNEEERNVEDANEIETTTTTIQNTAITEATSPTPIEIYVETININETDESLAQVDEQADSPSDYSTLNISYACKFCHKPQESYELQHMLLEHISSAHDPDQPYNCPDCTECFQDAASRTVHMKSAHVVKHYACDVCGKKYGDRHNLQHHIEKYHSETDFECSLCEKRFFTRKSLHYHMNWHKPERQLRCRHSGCDRLFINQRHLKCHEATHTTGSRKSEYCGFCGKAFTHVKTLRWHIYRQHGGEKPFKCAICTSVFDSYAEKRIHMLELHTENLTHQERSECMFQSCRQEFESEQELIQHMTAEHLQREPPAPVIANNKRVLQRKRERQYTGLFQCGSCSQRFNMKSALERHMAVHSADRLHACSHCSKRYKRAQDLKWHMKTHASEKPNVCDVCGKSFALKYVLTQHMRSHEVLEKNFKCETCGRSYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKTHMKNAHDANQLHTKDSLDDLINIVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00502704;
90% Identity: iTF_01322820;
80% Identity: -