Dfla010235.1
Basic Information
- Insect
- Drosophila flavopinicola
- Gene Symbol
- -
- Assembly
- GCA_035042425.1
- Location
- JAWNLL010000442.1:1934089-1938058[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.9 4.3e+02 1.7 2.2 1 23 180 206 180 206 0.82 2 13 0.00017 0.011 16.2 0.6 1 23 212 235 212 235 0.97 3 13 1.5e-05 0.00094 19.5 2.4 1 23 240 263 240 263 0.96 4 13 0.00035 0.022 15.2 4.6 1 23 268 290 268 290 0.98 5 13 6.4 4e+02 1.8 5.8 2 23 297 320 296 320 0.90 6 13 0.00021 0.013 15.9 1.5 3 23 330 351 329 351 0.95 7 13 0.0037 0.23 12.0 0.1 1 23 357 380 357 380 0.95 8 13 0.21 13 6.5 0.3 5 23 396 415 391 415 0.90 9 13 4.9e-05 0.0031 17.9 0.4 1 23 444 466 444 466 0.98 10 13 1.6e-05 0.001 19.4 5.3 1 23 472 494 472 494 0.96 11 13 9.6e-06 0.0006 20.1 0.1 2 23 501 522 501 522 0.97 12 13 0.00078 0.049 14.1 1.5 1 23 529 551 529 551 0.99 13 13 0.00038 0.024 15.1 3.9 1 23 557 580 557 580 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACTTGTGCAAGGTGCGATTTcgaaaatggcaacaacaactattggCTGGACTTGTTCCATCCGACGCGTTGGCAGAGCGAAATGGCGCAAATACGCTTGGAGTTTGTCAACTGGAAGTTACAGATCTCACCTAACGATGGACTGCCGCAAAAAATATGTAGCGATTGTTTTACAAAATTCTGCTCCATTTACACGTTTCGCATGTCCTGCCAGGATGCGCAATTAAAGCTCTcgaatatttttgataaaatcGATGCCCATATGCTGTATGACAAAGCCGATGAAGAGCACATAggcgctgatgctgatgctgatgaaatcgaaacagcaacagtattagaaacaacaacaacaacaacaacatcgacagAAACACAAAACACTGCCATTATTGAGGCCACATTGCCAACGCCCATAGAAATATTTGTGGAAACGATAGATATCAACGAACCGGAGGTGCTCGCCTCTCAACTAGATAATGAAACAGTTTTCGCTTCAGATTACAACTCATTGAACATTAGCTATGCCTGCAAGTTTTGCCACAAGCCACAGGAGAGCTATGAGCTGCAGCATTTGCTGCTGGAGCACATTAGCAGTGCCCATGATGCGGATCAGCCGTACAACTGTCCGGATTGCACGGAATGCTTTCAGGATGCCGCCTCCCGTACCGTGCACATGAAGAGCGCCCATGTGATTAAGCACTACGCGTGCGAGGTGTGCGGCAAAAAGTACGGAGATCGCCACAATCTGCAGCATCACATCGAGAAGTATCATTCGGAAACGGACTTcgagtgcagcatgtgtgagaaGCGTTTCTTTACGCGCAAGAGCCTCCACTACCACATGAACTGGCACAAACCGGAGCGCCAGCTGCGATGTCGCCACACTGGCTGCGACAGGCTGTTCATCAATCAACGCCATCTCAAGTGCCACGAGGCGACGCATTCAACGGGCTCCCGCAAAACGGAATACTGCGGCTTTTGTGGCAAAGCATTCACACATGTCAAGACCCTACGCTGGCATATCTATCGACAGCATGGCGGCGAGAAGCCTTTCAAATGTGCCATCTGCACTGAGGTGTTTGACTCGTATGCTGAAAAGCGCATTCACATGCTCGAGTTGCATACGGAAAATCTGACGCATCAGGAGCGCAGCGAGTGCATGTTCCAGTCCTGTCGCCAGGAGTTCGACAGCGAACAGGAGCTCGTCCAGCACATGACCACCGAGCATCTGCAGCGCGAGCCGCCGGCTCCGGTTATCGCGAACAATAAGCGTGTGCTCCAGCGGAAGCGGGAGCGACAGTTTACGGGTCTCTTCCAGTGCGCCAGCTGCACTCAGCGCTTCAACATGAAGTCCGCTCTGGAGCGGCACATGGCAGTGCATTCGGCCGATCGACTGCACGCATGCAGCCACTGTTCCAAGCGCTATAAGCGTGCCCAGGATCTGAAGTGGCATATGAAGACGCACGCCAACGAGAAGCCGAATGTCTGTGATGTTTGCGGCAAGGCATTTGCCCTCAAATATGTGCTTACCCAGCATATGCGCAGTCATGAGGTTCTTGAGAAAAACTTTAAGTGTGAGACCTGTGGGCGCTCATATCTATTCGAGAAGTCGCTGCGGCTACATCAACGTGTCCACACTGGCAACACCTACTACAAATGTGATTTGTGCCAGGAGCGTTTTGTCACTcacatcaaatttaaaaCTCATATGAAAAAGGCACATGATACCGACCAGTCGCATGCCAAAGATTCGCTGGATGATTTGATCAACATTGTGATTTCCTAA
- Protein Sequence
- METCRTCARCDFENGNNNYWLDLFHPTRWQSEMAQIRLEFVNWKLQISPNDGLPQKICSDCFTKFCSIYTFRMSCQDAQLKLSNIFDKIDAHMLYDKADEEHIGADADADEIETATVLETTTTTTTSTETQNTAIIEATLPTPIEIFVETIDINEPEVLASQLDNETVFASDYNSLNISYACKFCHKPQESYELQHLLLEHISSAHDADQPYNCPDCTECFQDAASRTVHMKSAHVIKHYACEVCGKKYGDRHNLQHHIEKYHSETDFECSMCEKRFFTRKSLHYHMNWHKPERQLRCRHTGCDRLFINQRHLKCHEATHSTGSRKTEYCGFCGKAFTHVKTLRWHIYRQHGGEKPFKCAICTEVFDSYAEKRIHMLELHTENLTHQERSECMFQSCRQEFDSEQELVQHMTTEHLQREPPAPVIANNKRVLQRKRERQFTGLFQCASCTQRFNMKSALERHMAVHSADRLHACSHCSKRYKRAQDLKWHMKTHANEKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFKCETCGRSYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKTHMKKAHDTDQSHAKDSLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502704;
- 90% Identity
- iTF_01322820;
- 80% Identity
- -