Dpeg005538.1
Basic Information
- Insect
- Drosophila pegasa
- Gene Symbol
- -
- Assembly
- GCA_035046225.1
- Location
- JAWNOD010000186.1:1486269-1490039[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0037 0.23 11.9 1.6 1 23 211 234 211 234 0.96 2 12 1.6e-05 0.00097 19.3 2.0 1 23 239 262 239 262 0.96 3 12 0.00032 0.02 15.2 4.6 1 23 267 289 267 289 0.98 4 12 5.5 3.4e+02 1.9 5.7 2 23 296 319 295 319 0.90 5 12 0.00011 0.0066 16.7 0.6 2 23 328 350 328 350 0.95 6 12 0.0037 0.23 11.9 0.1 1 23 356 379 356 379 0.95 7 12 0.25 15 6.1 0.4 5 23 395 414 390 414 0.87 8 12 0.00017 0.011 16.1 0.5 1 23 444 466 444 466 0.98 9 12 1.4e-05 0.00086 19.5 5.4 1 23 472 494 472 494 0.96 10 12 8.8e-06 0.00054 20.1 0.1 2 23 501 522 501 522 0.97 11 12 0.0014 0.085 13.2 0.4 1 23 529 551 529 551 0.98 12 12 6.5e-05 0.004 17.4 3.0 1 23 557 580 557 580 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCAAGGTGCGATTTCGAAAATGGCAACAACTATTGGCTGGATATGTTTCATCCAACGCGTTGGCAGAGTGAAATGGCTCAAATACGCGCAGAGTTTGTCAACTGGAAGTTACAGATCGCTCCAAATGATGGACTGCCCCAAAAAATTTGTAGCGACTGCTTTACAAAGTTTTGCTCAGTTTACACGTTTCGCATGGCATGCCAGGATGCACAATTAAAGTTGTcgaatatttttgataaaatcGACGCGAACCTGATGTATGATAGAAACGATGAGGAAAGCCTTGAAGTTAACGCTGATGCGCCCGAATCGAGAGCGGAAATGTGCACAGTAACAgaaactgcaacaacaacgacaacaacaacaatagagaACACTGCCATTATTGAGGCCAAATCGCCCACGCCCATAGAAATCTTTGTGGAAACAGTTGATATCAACGAAACCGAATCCTTTCAACCGGCTATTGAAGAAGCCGACGTAGCTTCAGATTACAATTCATTAAACATTAGCTACGCATGCAAATTCTGTTATAGGCCAAAAGAAAGCTATGAGCTACAGCACCTGCTACTAGAGCACATAAGCGGCTGCCACGATCCGGATCAACCCTACAACTGTCCACAGTGCACTGAATGTTTTCAGGACACCGCATCGCGTACTGTCCACATGAAGAACGTTCATGTGGTCAAGCACTATGCCTGCGAGGTGTGTGGCAAGAAGTACGGAGATCGCCACAATCTCGAGCATCACATCGAGAAGTATCACTCGGAAACGGACTTCGAGTGCAGCATGTGCGAGAAGCGTTTCTTTACGCGCAAAAGTCTGCACTACCACATGAACTGGCACAAGCCGGAGCGCCAGCTCCGATGTCGCCACAGCGGCTGCGACCGGCTGTTCATCAATCAACGACATCTCAAATGTCATGAGGCAACCCACACAACGGGCTCCCGTAAGAGCGAGTATTGCGGCATTTGTGGCAAAGCATTCATACATGTAAAAACCCTACGTTGGCATATCTATCGACAGCATGGCGGAGAGAAGCCCTTCAAATGCGCCATCTGCACTGAGGTGTTTGCCTCCTATGTGGAAAAACGCATTCATATGCTTGAGCTGCACACGGAAAATCTCACCCATCAGGAGCGCAGCGAGTGCATGTTTCAGTCCTGTCGCCAGGAGTTTGACAACGAACAGCAGCTCATTCAGCACATGACCCAGGAGCATGTACATCGCGAAGCGCCCTCCACTCCGATCATTGCAAACAATAAGCGAGTGATCCAATGCAAAAGGGAACGACAGTATACGGGGCTCTTCCAGTGCGGCAGCTGCACCCAGCGCTTCAACATGAAGTCCGCCTTGGATCGTCACATGGCTGTGCACTCGACAGATCGGCTGCATGCCTGTACGCACTGCTCCAAGCGCTATAAGCGTGCGCAGGATCTCAAGTGGCATATGAAGACCCATGCCAATGAAAAGCCGAATGTGTGCGATGTTTGCGGCAAGGCGTTTGCCTTGAAATATGTCCTAACTCAGCATATGCGCAGTCATGAGGttCTCGAGAAGAATTTCAACTGCGACATCTGTGGACGGGCATATCTGTTTGAAAAGTCATTGCGCCTGCACCAACGTGTGCACACGGGCAATACCTACTATAAATGCGATCTGTGCCAAGAGCGTTTCGTCACCCACATCAAACTTAAAACTCATATGAAGAAGGCACACGATGAGAACCAGTCGCATTCCAAGGATACGCTGGATGATTTGATCAATATTGTGATTAACTGA
- Protein Sequence
- METCRTCARCDFENGNNYWLDMFHPTRWQSEMAQIRAEFVNWKLQIAPNDGLPQKICSDCFTKFCSVYTFRMACQDAQLKLSNIFDKIDANLMYDRNDEESLEVNADAPESRAEMCTVTETATTTTTTTIENTAIIEAKSPTPIEIFVETVDINETESFQPAIEEADVASDYNSLNISYACKFCYRPKESYELQHLLLEHISGCHDPDQPYNCPQCTECFQDTASRTVHMKNVHVVKHYACEVCGKKYGDRHNLEHHIEKYHSETDFECSMCEKRFFTRKSLHYHMNWHKPERQLRCRHSGCDRLFINQRHLKCHEATHTTGSRKSEYCGICGKAFIHVKTLRWHIYRQHGGEKPFKCAICTEVFASYVEKRIHMLELHTENLTHQERSECMFQSCRQEFDNEQQLIQHMTQEHVHREAPSTPIIANNKRVIQCKRERQYTGLFQCGSCTQRFNMKSALDRHMAVHSTDRLHACTHCSKRYKRAQDLKWHMKTHANEKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFNCDICGRAYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKLKTHMKKAHDENQSHSKDTLDDLINIVIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502704;
- 90% Identity
- -
- 80% Identity
- -