Deng009567.1
Basic Information
- Insect
- Drosophila engyochracea
- Gene Symbol
- -
- Assembly
- GCA_035042385.1
- Location
- JAWNLK010000106.1:269659-273148[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0007 0.044 14.1 2.2 1 23 209 232 209 232 0.97 2 12 1.3e-05 0.00085 19.5 2.4 1 23 237 260 237 260 0.96 3 12 0.00031 0.02 15.2 4.6 1 23 265 287 265 287 0.98 4 12 5.3 3.4e+02 1.9 5.7 2 23 294 317 293 317 0.90 5 12 0.00019 0.012 15.9 1.5 3 23 327 348 326 348 0.95 6 12 0.0033 0.21 12.0 0.1 1 23 354 377 354 377 0.95 7 12 0.32 20 5.8 0.2 5 23 393 412 388 412 0.87 8 12 3e-05 0.0019 18.4 0.4 1 23 441 463 441 463 0.98 9 12 1.4e-05 0.0009 19.4 5.3 1 23 469 491 469 491 0.96 10 12 3.7e-06 0.00023 21.3 0.2 2 23 498 519 498 519 0.97 11 12 0.00072 0.046 14.1 1.5 1 23 526 548 526 548 0.99 12 12 6.3e-05 0.004 17.4 3.0 1 23 554 577 554 577 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACTTGTGCTAGGTGCGATTTcgaaaatggcaacaacaactattggTTGGACTTGTTCCATCCAACGAGTTGGCAGAACGAAATGGCTCAAATACGCCTCGAGTTTGCCAACTGGAAGTTACAGatctCACCTAACGATGGACtgccacaaaaaatatgtagcgATTGTTTTACCAAATTCTGCTCGATTTACACGTTTCGCATGGCTTGCCAGGATGCGCAATTGAAGCTCtcgaatatttttgataaaatcGATGCCCATATGCTGTATGACAAAAACGACGAAGCAGAGCCCATTGCAGATGATGCAGATGAAATAGAAACGTCAACAGAAATAgaagcaataacaacgacaaaagcaacacaagaCACTGCCATTATTGAGGTCACATCGCCAACACCCATAGAAATATATGTGGAAACGATAAACATCAACGAAGTAGATATATCCCCACAGCCAGTAGTAGACGAGCAAACCGATTTGGCTTCAGACTACAGCACATTGAACATTAGCTACGCTTGCAAATTTTGTTACAAGCCACAGGCGAGCTATGAACTGCAGCATGTGCTTCTAGAGCACATTAGTAGCGCACATGATCCGGATCAGCCCTACAACTGTCCGCATTGCACAGAATGCTTCCAGGACGCTGCCTCCCGCACCGTGCACATGAAGAACGCCCATGTCATCAAGCACTACGCGTGCGAGGTGTGCGGCAAAAAGTATGGAGATCGTCATAATCTTCAGCATCACATCGAGAAATATCATTCAGAAACGGATTTCGAGTGCAGCATGTGTGAGAAGCGTTTCTTTACACGCAAAAGCCTTCATTACCACATGAACTGGCACAAGCCAGAGAGGCAGCTGAGGTGTCGCCACAGTGGCTGCGACAGGCTCTTCATCAATCAACGACATCTTAAATGTCATGAGGCAACTCACACAGCCGGCTCTCGCAAGAGTGAATACTGCGGTTTCTGTGGCAAAGCTTTCACACATGTTAAAACACTACGATGGCATATCTATAGACAGCATGGCGGTGAGAAGCCCTTCAAATGTGCCATTTGCACTGAGGtttttgacTCGTATGCTGAAAAGCGTATTCACATGCTCGAGTTGCACACGGAAAATCTGACGCATCAGGAGCGCAGTGAGTGTATGTTCCAATCCTGTCGCCAGGAGTTTGACACCGAACAGGAGCTCATCCAGCACATGAGCGCCGAGCATCTGCAACGCGAACCGTCAGCTCCAGTGATATCGAACAATAAGCGAGTGCTCCAGCGGAAACGGGAGCGCCAATATACGGGTCTCTTCCAATGCGGCAGCTGTTCGCAACGATTCAACATGAAGTCCGCACTGGAGCGGCACATGGCTGTGCATTCGGCAGATCGACTGCACGCCTGCAGTCACTGTTCCAAGCGCTATAAGCGTGCCCAGGATTTGAAGTGGCATATGAAGACGCATGCCAATGAGAAGCCCAATGTTTGTGATGTTTGCGGTAAATCATTTGCCCTGAAATATGTACTTACTCAGCATATGCGCAGTCATGAGGttcTTGAGAAGAACTTCAAGTGTGACACTTGTGGACGTTCTTATCTATTTGAGAAGTCTCTGCGTCTCCATCAACGCGTTCACACTGGCAACACTTACTACAAATGCGATCTGTGTCAGGAGCGTTTTGTGACTcacatcaaattgaaaaCTCATATGAAAAAGGCACATGATACAAACCAGTCGCATGCCAAAGATTCGCTGGATAATTTGATCAACATTGTGATTTCCTAA
- Protein Sequence
- METCRTCARCDFENGNNNYWLDLFHPTSWQNEMAQIRLEFANWKLQISPNDGLPQKICSDCFTKFCSIYTFRMACQDAQLKLSNIFDKIDAHMLYDKNDEAEPIADDADEIETSTEIEAITTTKATQDTAIIEVTSPTPIEIYVETININEVDISPQPVVDEQTDLASDYSTLNISYACKFCYKPQASYELQHVLLEHISSAHDPDQPYNCPHCTECFQDAASRTVHMKNAHVIKHYACEVCGKKYGDRHNLQHHIEKYHSETDFECSMCEKRFFTRKSLHYHMNWHKPERQLRCRHSGCDRLFINQRHLKCHEATHTAGSRKSEYCGFCGKAFTHVKTLRWHIYRQHGGEKPFKCAICTEVFDSYAEKRIHMLELHTENLTHQERSECMFQSCRQEFDTEQELIQHMSAEHLQREPSAPVISNNKRVLQRKRERQYTGLFQCGSCSQRFNMKSALERHMAVHSADRLHACSHCSKRYKRAQDLKWHMKTHANEKPNVCDVCGKSFALKYVLTQHMRSHEVLEKNFKCDTCGRSYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKLKTHMKKAHDTNQSHAKDSLDNLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502704;
- 90% Identity
- iTF_00564814;
- 80% Identity
- -