Dmay001744.1
Basic Information
- Insect
- Drosophila mayaguana
- Gene Symbol
- -
- Assembly
- GCA_037075325.1
- Location
- JBAMCG010000037.1:9878544-9882509[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.7 6.6e+02 1.1 2.0 3 16 57 70 56 72 0.84 2 13 0.00091 0.062 13.8 1.2 1 23 210 233 210 233 0.97 3 13 9.2e-05 0.0063 16.9 2.0 1 23 238 261 238 261 0.96 4 13 0.00032 0.022 15.2 4.6 1 23 266 288 266 288 0.98 5 13 5.2 3.5e+02 2.0 4.5 2 23 295 318 294 318 0.89 6 13 0.00048 0.033 14.7 1.0 3 23 328 349 327 349 0.95 7 13 0.0037 0.25 11.9 0.1 1 23 355 378 355 378 0.95 8 13 0.14 9.8 6.9 0.2 5 23 394 413 389 413 0.89 9 13 3e-05 0.002 18.5 0.4 1 23 443 465 443 465 0.98 10 13 1.5e-05 0.001 19.4 5.3 1 23 471 493 471 493 0.96 11 13 8.8e-06 0.0006 20.1 0.1 2 23 500 521 500 521 0.97 12 13 0.0012 0.082 13.4 0.9 1 23 528 550 528 550 0.99 13 13 0.00035 0.024 15.1 3.9 1 23 556 579 556 579 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCAAGGTGCGATTTCGAAAATGGCAACAACTATTGGCTGGATATGTTTCATCCAACGCGCTGGCAGAGTGAAATGGCGCAAATTCGCGCAGAGTTTGTCAACTGGAAGTTACAGaTCTCTCCAAACGATGGACTGCCACAAAAAATTTGTAGCGATTGCTTTACAAAGTTCTGCTCCGTTTACACGTTTCGCATAGCTTGCCAGGACGCACAATTAAAACTGTcgaatatttttgataaaatCGATGCTAATTTACTGTATGAtagaaatgaagaagaaagcaTTGAAGTTGATGCTGATGACTCAGaagcaacaacgaaaacacGCACAgtagcagaaacagcaacaacaacgacaacaacaatagagaACACTGCCATTAATGCGGCCAAATCACCGGCTCCCATTGAGATCTTTGTGGAAACCATTAGAATTAACGAAAGCGAATCCTTGCAGCCAGAAGATAAAGAAGCCGACTTGGGCTCAGATTGTAATTCATTGAAAATAACCTATGCTTGTAAGTTCTGTTATAAGCCGCAAGAAAGTTATGAGCTACAGCACTTGTTACTAGAGCACATTAGTGTCTGCCACGATACAGATCAACCCTACAACTGCCCGGAGTGCACTGAATGTTTTCAAGACACAGCATCGCGTACCGTCCACATGAAGAGCGTTCATGTGGTCAAGCACTATGCATGTGAAGTTTGCGGCAAAAAGTATGGAGACCGCCACAATCTCGACCATCACATTGAGAAGTATCACTCGGACACGGACTTCGAGTGCAGCATGTGCGAGAAACGGTTTTTTACGCGCAAAAGCCTGCACTACCACATGAACTGGCACAAGCCGGAGCGTCAGCTCCGATGTCGTCACAATGGATGTGACCGGCTGTTCATCAATCAACGACATCTCATATGTCACGAGGCCACCCACACAACGGGATCCCGTAAGAGCGAGTATTGCGGCTTTTGTGGTAAAGCATTCATACATGTAAAAACCCTTCGTTGGCATATCTATCGACAGCATGGCGGAGAGAAGCCTTTTAAATGTGCCATCTGCACTGAGGTGTTTGCTTCCTATGTGGAGAAGCGCATTCATATGCTTGAGCTGCACACGGAAAATCTGACGCATCAGGAGCGTAGCGAGTGCATGTTTCAGTCCTGTCGCCAGGAGTTCGATACGGAACAGGAGCTCATCCAGCACATGACCATGGAGCATGCACAGCGTGATACTTCCTCAGCTCCGATCATTGCGAACAATAAGCGAGTGATCCAGTGCAAAAGGGAACGACAATATACCGGTCTCTTCCAGTGCGGCAGCTGCACCCAACGTTTCAACATGAAGTCCGCCTTGGAGCGCCACATGGCTGTCCACTCAACGGATCGGATGCATGCCTGTTCGCACTGCTCCAAGCGCTATAAGCGTGCTCAGGATCTTAAGTGGCATATGAAGACccatgcaaatgaaaagccTAATGTGTGCGATGTATGCGGCAAGGCTTTTGCCTTGAAATATGTCCTAACTCAGCATATGCGCAGTCATGAGGTTCTTGAGAAGAATTTCAAGTGCGAGACCTGTGGACGGGCGTATCTGTTTGAAAAATCATTACGGTTGCACCAACGTGTGCACACAGGCAATACATACTATAAATGCGATCTGTGCCAAGAGCGATTTGTCACACACatcaaatttaaaaCTCACATGAAAAAGGCACATGATGGCGACCAGTCACATTCTAAGGATACGCTGAATGATTTGATCAATATTGTGATTAACTAA
- Protein Sequence
- METCRTCARCDFENGNNYWLDMFHPTRWQSEMAQIRAEFVNWKLQISPNDGLPQKICSDCFTKFCSVYTFRIACQDAQLKLSNIFDKIDANLLYDRNEEESIEVDADDSEATTKTRTVAETATTTTTTIENTAINAAKSPAPIEIFVETIRINESESLQPEDKEADLGSDCNSLKITYACKFCYKPQESYELQHLLLEHISVCHDTDQPYNCPECTECFQDTASRTVHMKSVHVVKHYACEVCGKKYGDRHNLDHHIEKYHSDTDFECSMCEKRFFTRKSLHYHMNWHKPERQLRCRHNGCDRLFINQRHLICHEATHTTGSRKSEYCGFCGKAFIHVKTLRWHIYRQHGGEKPFKCAICTEVFASYVEKRIHMLELHTENLTHQERSECMFQSCRQEFDTEQELIQHMTMEHAQRDTSSAPIIANNKRVIQCKRERQYTGLFQCGSCTQRFNMKSALERHMAVHSTDRMHACSHCSKRYKRAQDLKWHMKTHANEKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFKCETCGRAYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKTHMKKAHDGDQSHSKDTLNDLINIVIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502704;
- 90% Identity
- iTF_00573493;
- 80% Identity
- -