Drub002054.1
Basic Information
- Insect
- Drosophila rubida
- Gene Symbol
- -
- Assembly
- GCA_035046165.1
- Location
- JAWNOF010000012.1:17098748-17101764[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0002 0.012 15.9 0.2 1 23 216 239 216 239 0.97 2 12 7.2e-05 0.0043 17.2 2.4 3 23 246 267 244 267 0.96 3 12 0.00032 0.019 15.2 4.6 1 23 272 294 272 294 0.98 4 12 5.3 3.1e+02 1.9 5.7 2 23 301 324 300 324 0.89 5 12 0.00047 0.028 14.7 1.0 3 23 334 355 333 355 0.95 6 12 0.0023 0.13 12.5 0.1 1 23 361 384 361 384 0.95 7 12 0.14 8 6.9 0.9 5 23 400 419 395 419 0.88 8 12 1.3e-05 0.00078 19.6 0.2 1 23 448 470 448 470 0.98 9 12 1.4e-05 0.00081 19.5 5.4 1 23 476 498 476 498 0.96 10 12 8.8e-06 0.00051 20.1 0.1 2 23 505 526 505 526 0.97 11 12 0.0012 0.07 13.4 0.9 1 23 533 555 533 555 0.99 12 12 0.0006 0.035 14.3 4.6 1 23 561 584 561 584 0.98
Sequence Information
- Coding Sequence
- atGGAAACGTGTCGCACTTGTGCCAAGTGCGATTTcgaaaatggcaacaacaactattggTTGGACTTGTTCCATCCAGCCCGTTGGCAGAGCGAAATGGCGCAAATTCGCATGGAGTTTGTTAACTGGAAGTTACAGATCGCACCTAACGATGGACTGCCACAGAAAATATGCAGCGATTGTTTTACAAAATTCTGCTCGATTTACACGTTTCGCATGGCCTGTCAGGATGCGCAATTAAAGCTCTCAAATATCTTTGATAAAATCGATGCCAATTTACTCTATGACAAAAACGACGAAGAGCAGCACGTTGATGAGCAcgttgatgttgctgatgcCAACGTTGCTGGGGATGCGATAACAgagacaacaactgcaacacaaAACACTGCCAATATTGAGGCCAAGTCGCCAACGCCCATAGAAATCTATGTAGAAACGATTAACATCAACgaaacagcaaatgcaactgaaactgaaaccgaaacatTGCAATTAGATGAGGGAGTAGATGATTTTTCTACAGATTTCAATTCCCTGAACATCAGCTTTGCTTGTAAATTTTGTTACAAGCCCGACGAAAGCTACGAACTGCAGCATCTGCTCTTAGAGCATATCAGTAGCGCCCACGATCCGGATCAGCCATACAATTGTCCGGAATGTACAGAATCTTTCCAAGACGCCGCTTCGCGTACGGTGCACATGAAGAGCAGCCATGTTGTAAAGCATTATGGCTGCGAGGTGTGCGGCAAGAAGTACGGCGATCGACATAACTTACGTCATCATATTGAGAAATATCACTCGGAGACGGACTTTGAGTGCAGCATGTGCGAGAAGCGTTTCTTTACCCGCAAAAGTTTGCATTACCACATGAATTGGCACAAACCCGAGCGCCAACTGAGATGTCGGCACAACGGTTGCGACAGACTGTTCATCAATCAACGCCATCTCAAGTGTCACGAGGCAACTCACACCACGGGCTCCCGTAAGAGCGAATACTGTGGCTTTTGTGGCAAAGCTTTTATACATGTGAAGACCTTGCGATGGCATATCTATCGACAGCATGGCGGTGAGAAGCCCTTCAAGTGCGCAATCTGCACAGAGGTTTTCGCATCGTATGCTGAGAAACGCATTCATATGCTTGAGCTGCACACGGAGAATCTAACGCACCAGGAACGTAGTGAGTGTATGTTTCAATCCTGTCGACAGGAGTTCGACAACGAACATCAGCTAATTCAGCACATGAGTCTCGAGCATCTGCAGCGCGAACCAGCAACTCCCATCATTGCCAACAATAAACGTGTGCTCCAAAGGAAGCGGGAGCGACAGTACACAGGACTCTTTCAGTGCGGCAGTTGTCCGCAACGTTTCAATATGAAGTCCGCTTTGGAGCGCCACATGGCGGTGCACTCGGCAGATCGGTTGCATGCGTGTACGCACTGTTCCAAACGCTATAAGCGGGCCCAGGACTTGAAGTGGCATATGAAGACCCATGACAATGAGAAGCCCAATGTTTGCGATGTCTGCGGCAAAGCATTTGCCCTGAAATATGTGCTTACCCAGCATATGCGTAGTCATGAGGTTCTCGAGAAGAACTTCAAGTGTGAGACCTGTGGACGTGCCTATCTATTTGAAAAGTCGCTGCGACTTCATCAGCGTGTCCACACGGGCAACACTTACTATAAATGTGATTTGTGCCAGGAGCGATTTGTGACCCACATCAagtttaaaaCTCACATGAAAAAGATGCACGATACCAACCAGTCCCATACTAAGGATTCTCTTGATGATTTGATCAACATTGTGATTTCCTAA
- Protein Sequence
- METCRTCAKCDFENGNNNYWLDLFHPARWQSEMAQIRMEFVNWKLQIAPNDGLPQKICSDCFTKFCSIYTFRMACQDAQLKLSNIFDKIDANLLYDKNDEEQHVDEHVDVADANVAGDAITETTTATQNTANIEAKSPTPIEIYVETININETANATETETETLQLDEGVDDFSTDFNSLNISFACKFCYKPDESYELQHLLLEHISSAHDPDQPYNCPECTESFQDAASRTVHMKSSHVVKHYGCEVCGKKYGDRHNLRHHIEKYHSETDFECSMCEKRFFTRKSLHYHMNWHKPERQLRCRHNGCDRLFINQRHLKCHEATHTTGSRKSEYCGFCGKAFIHVKTLRWHIYRQHGGEKPFKCAICTEVFASYAEKRIHMLELHTENLTHQERSECMFQSCRQEFDNEHQLIQHMSLEHLQREPATPIIANNKRVLQRKRERQYTGLFQCGSCPQRFNMKSALERHMAVHSADRLHACTHCSKRYKRAQDLKWHMKTHDNEKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFKCETCGRAYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKTHMKKMHDTNQSHTKDSLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502704;
- 90% Identity
- iTF_00507070;
- 80% Identity
- -