Basic Information

Insect: Zaprionus capensis
Gene Symbol: -
Assembly: GCA_018903675.1
Location: JAEIFN010000964.1:10562991-10566256[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.9 2.1e+02 2.6 2.9 1 23 182 208 182 208 0.81

2 13 0.0003 0.021 15.1 0.1 1 23 214 237 214 237 0.97

3 13 3.2e-05 0.0023 18.2 3.0 1 23 242 265 242 265 0.96

4 13 0.00048 0.034 14.5 4.3 1 23 270 292 270 292 0.98

5 13 4.1 2.9e+02 2.1 5.8 2 23 299 322 298 322 0.91

6 13 0.00042 0.03 14.7 1.0 3 23 332 353 331 353 0.95

7 13 0.00054 0.038 14.3 0.2 1 23 359 382 359 382 0.95

8 13 0.025 1.8 9.1 0.1 6 23 399 417 393 417 0.93

9 13 2.6e-05 0.0019 18.5 0.4 1 23 446 468 446 468 0.98

10 13 1.2e-05 0.00086 19.5 5.4 1 23 474 496 474 496 0.96

11 13 7.7e-06 0.00055 20.1 0.1 2 23 503 524 503 524 0.97

12 13 0.0028 0.2 12.1 3.7 1 23 531 553 531 553 0.99

13 13 0.00031 0.022 15.1 3.9 1 23 559 582 559 582 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.9	2.1e+02	2.6	2.9	1	23	182	208	182	208	0.81
2	13	0.0003	0.021	15.1	0.1	1	23	214	237	214	237	0.97
3	13	3.2e-05	0.0023	18.2	3.0	1	23	242	265	242	265	0.96
4	13	0.00048	0.034	14.5	4.3	1	23	270	292	270	292	0.98
5	13	4.1	2.9e+02	2.1	5.8	2	23	299	322	298	322	0.91
6	13	0.00042	0.03	14.7	1.0	3	23	332	353	331	353	0.95
7	13	0.00054	0.038	14.3	0.2	1	23	359	382	359	382	0.95
8	13	0.025	1.8	9.1	0.1	6	23	399	417	393	417	0.93
9	13	2.6e-05	0.0019	18.5	0.4	1	23	446	468	446	468	0.98
10	13	1.2e-05	0.00086	19.5	5.4	1	23	474	496	474	496	0.96
11	13	7.7e-06	0.00055	20.1	0.1	2	23	503	524	503	524	0.97
12	13	0.0028	0.2	12.1	3.7	1	23	531	553	531	553	0.99
13	13	0.00031	0.022	15.1	3.9	1	23	559	582	559	582	0.98

Sequence Information

Coding Sequence: ATGGAAACGTGCCGCACTTGTGCCAAGTGCGATTTTGAAAATGGCAATAACAACTATTGGCTGGACTTGTTTCATCCGAATCGCTGGAAGAGCGAAATGGCGCAAATACGTTTGGAGTTTTTTAACTGGAAGTTACAGATTTCACCCAACGACGGACTACCACAGAAAATATGCAGCGACTGCTTTTCAAAGTTCTGCTCCATTTATACTTTTCGCTTGGCCTGCCAGGACGCGCAACTGAAGCTGTCGAATATTTTTGACAAAATCGATGCCAACACGTTGTACGACAGAAGTGACGACGAAGCGGAGCAGCTGGTGGAGGAACTGGGGCCAGATGATGCTGCTGATGTCGGGAGAACAGACACGCCAACTGAGACGACTGGAACAACAACAAGAACACAAAACACTGCCATTATTGAGGCCACAACGTCGCCCATTGAAATCTATGTAGAAACGATAAATATCAACGAAACAGATTCAATGCAATTAGTAGATGAGACAACAGATTTAGTTCCAACAGATTTCAACGAATTGAACATAAGTTATTCGTGTAAATATTGCTACAAACCCGAGGATAGTTTTGAACAGCAAAATCTGCTGTTGGAGCACATTAGTAGTAAACACGATGCGGACCAACCATACAACTGCCCCGAGTGCCCAGAGCGCTTTCAGGATGCCGCATCCCGTACTGTGCACATGAAGAACTCTCACGTAGTCAAGCATTTTGTCTGCGAGGTGTGCGGCAAGAAGTATGGGGATCGTCATAACCTGCGACACCATGTGGAGAAATATCACTCGGAGACCGACTTCGAGTGCAGCCTATGCGAGAAGCGTTTCTTTTCACGCAAAAGTCTGCACTACCACATGAACTGGCACAATCCGGAGCGACAGCTAAAGTGCAGACACAGTGGCTGCGATAGACTCTTCATCAATCAAAGACATCTCAAATGTCATGAGGCAACACATACCACAGGCTCCCGGAAGAGCGAATACTGCGGCTTTTGCGGCAAAGCTTTCATACATGTGAAGACCCTACGCTGGCATATCTATCGGCAACACGGTGGGGAGAAACCGTTTAAATGCGCTATCTGCACAGAGGTGTTTGCATCGTATTCCGAGAAACGAATTCACATGCTAGAGTTGCATACTGAAAATTTGACTCATCAAGAGCGCAGTGAGTGCATGTATCAGGCATGTCGCCAGGAGTTCGATAACGAGCAGGATCTCATCCGTCATATGGAAACAGACCACCTGCAAAGGGGGCCCGCAACGCCCATTATTGCAAACAATAAGAGGGTTCTGCAGCGCAAGCAGGAGAGAAAGTTCACTGGTCTTTTCCAGTGCGGTAGCTGCACCCAGCGCTTTAATATGAAATCAGCCCTGGAGCGTCACATGGCCGTACACTCGGCAGATCGTTTGCACGCCTGCACTCACTGCTCCAAGCGATATAAGCGTGCCCAGGATCTAAAGTGGCACATGAAGACACATGCCAACGAGAAGCCCAATGTTTGTGATGTCTGTGGCAAGGCCTTTGCGCTGAAATATGTACTTACCCAGCACATGCGGAGTCATGAAGTTCTTGAGAAGAACTTCAAATGTGAGACATGTGGACGATGCTATCTGTTCGAGAAGTCGCTTCGCCTTCATCAGCGTGTCCACACTGGAAATACTTACTATAAATGCGACTTGTGCCAGGAACGTTTTGTGACGCACATCAAGTTTAAAACACATATGAAGAAAGCACATGACTCCAACCAGTCCCATGATAATGATTCACTTGACGGTTTAATCAACATTGTGATTTCTTAA
Protein Sequence: METCRTCAKCDFENGNNNYWLDLFHPNRWKSEMAQIRLEFFNWKLQISPNDGLPQKICSDCFSKFCSIYTFRLACQDAQLKLSNIFDKIDANTLYDRSDDEAEQLVEELGPDDAADVGRTDTPTETTGTTTRTQNTAIIEATTSPIEIYVETININETDSMQLVDETTDLVPTDFNELNISYSCKYCYKPEDSFEQQNLLLEHISSKHDADQPYNCPECPERFQDAASRTVHMKNSHVVKHFVCEVCGKKYGDRHNLRHHVEKYHSETDFECSLCEKRFFSRKSLHYHMNWHNPERQLKCRHSGCDRLFINQRHLKCHEATHTTGSRKSEYCGFCGKAFIHVKTLRWHIYRQHGGEKPFKCAICTEVFASYSEKRIHMLELHTENLTHQERSECMYQACRQEFDNEQDLIRHMETDHLQRGPATPIIANNKRVLQRKQERKFTGLFQCGSCTQRFNMKSALERHMAVHSADRLHACTHCSKRYKRAQDLKWHMKTHANEKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFKCETCGRCYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKTHMKKAHDSNQSHDNDSLDGLINIVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00502704;
90% Identity: iTF_01553406;
80% Identity: -