Basic Information

Insect: Scaptomyza caliginosa
Gene Symbol: -
Assembly: GCA_035044725.1
Location: JAWNNR010000510.1:893301-896149[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.7 6.3e+02 1.1 1.9 3 16 58 71 57 73 0.84

2 14 9.8 6.4e+02 1.0 2.5 1 23 169 195 169 195 0.80

3 14 0.0006 0.039 14.3 0.3 1 23 201 224 201 224 0.97

4 14 6.7e-06 0.00044 20.4 2.7 1 23 229 252 229 252 0.97

5 14 0.0003 0.019 15.3 4.6 1 23 257 279 257 279 0.98

6 14 4.9 3.2e+02 2.0 5.7 2 23 286 309 285 309 0.89

7 14 0.00018 0.012 16.0 1.5 3 23 319 340 318 340 0.95

8 14 0.0032 0.21 12.0 0.1 1 23 346 369 346 369 0.95

9 14 0.54 35 5.0 0.2 5 23 385 404 380 404 0.86

10 14 2.9e-05 0.0019 18.5 0.4 1 23 433 455 433 455 0.98

11 14 1.4e-05 0.00089 19.5 5.3 1 23 461 483 461 483 0.96

12 14 8.2e-06 0.00053 20.2 0.1 2 23 490 511 490 511 0.97

13 14 0.00067 0.044 14.1 1.5 1 23 518 540 518 540 0.99

14 14 0.00048 0.031 14.6 3.4 1 23 546 569 546 569 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.7	6.3e+02	1.1	1.9	3	16	58	71	57	73	0.84
2	14	9.8	6.4e+02	1.0	2.5	1	23	169	195	169	195	0.80
3	14	0.0006	0.039	14.3	0.3	1	23	201	224	201	224	0.97
4	14	6.7e-06	0.00044	20.4	2.7	1	23	229	252	229	252	0.97
5	14	0.0003	0.019	15.3	4.6	1	23	257	279	257	279	0.98
6	14	4.9	3.2e+02	2.0	5.7	2	23	286	309	285	309	0.89
7	14	0.00018	0.012	16.0	1.5	3	23	319	340	318	340	0.95
8	14	0.0032	0.21	12.0	0.1	1	23	346	369	346	369	0.95
9	14	0.54	35	5.0	0.2	5	23	385	404	380	404	0.86
10	14	2.9e-05	0.0019	18.5	0.4	1	23	433	455	433	455	0.98
11	14	1.4e-05	0.00089	19.5	5.3	1	23	461	483	461	483	0.96
12	14	8.2e-06	0.00053	20.2	0.1	2	23	490	511	490	511	0.97
13	14	0.00067	0.044	14.1	1.5	1	23	518	540	518	540	0.99
14	14	0.00048	0.031	14.6	3.4	1	23	546	569	546	569	0.97

Sequence Information

Coding Sequence: ATGGAAACGTGTCGCACTTGTGCAAGGTGCGATTTcgaaaatggcaacaacaactattggCTGGACTTGTTCCATCCAGTGCGTTGGCAGAGCGAAATGGCGCAAATACGCTTAGAGTTTGTCAACTGGAAGTTAcagATCTCACCTAACGATGGACTgccacaaaaaatatgtagcGATTGTTTTACAAAGTTTTGCTCGATTTACACGTTTCGCATGGCCTGTCAGGATGCTCAATTAAAGCTTTCGAATATTTTTGACAATATCGAAGCCCATATGCTGTACGACAAGAACGAAGATGCTGAAGGCatagaaacagcaacaaatatagaaacaacaacaacgacaacaacaacacaaaacactgCCATTATTGAGGAAACAACGCCAATGCCCATAGAAATATATGTGGAGAGCGTTAATATCAACGAAACATCAGAAACCTTACCACAACTAGAGCAGCACACCGATCTAGCTGCAGATTACAACACATTAAACATAAGCTTTGCTTGTAAATTCTGCCACAAGCCACAGGAGAGCTATGAACTGCAGCACATGCTGCTGGAGCACATCAGCAGCGCCCACGATCCGGATCAGCCCTACAACTGTCCGGATTGTGCTGAATGCTTTCAGGATGCTGCCTCGCGTACCGTGCACATGAAGAGCGCCCATGTCGTCAAACACTATGTGTGCGATGTGTGCGGCAAAAAGTACGGAGATCGTCATAATCTACAGCATCACATTGAGAAATATCATTCGGAAACCGATTTCGAGTGCAGCATGTGCGAGAAGCGTTTCTTTACACGCAAAAGCCTGCACTATCACATGAACTGGCATAAGCCGGAGCGGCAGCTAAGATGTCGTCACAATGGCTGTGACAGGCTGTTTATCAATCAACGGCATCTGAAATGCCATGAAGCAACGCATTCAACTGGTTCCCGCAAAAGTGAATACTGtggtttttgtggcaaagCTTTTACACATGTTAAAACTCTACGTTGGCATATCTATAGACAGCATGGCGGTGAGAAGCCCTTTAAATGTGCCATTTGCACCGAGGTATTCGACTCGTATGCCGAAAAGCGTATACACATGCTGGAGCTGCATACGGAAAACCTAACACATCAGGAGCGCAGCGAATGCATGTTTCAATCGTGTCGCCAGGAGTTTGACAGCGAACAGGAGCTCATACAGCACATGACTGCCGAGCATTTGCAGCGGGAGCCGGCGGCTCCCGTTAtagcaaacaataaacgtGTGCTGCAACGGAAACGGGAACGCCAATATACGGGTCTCTTCCAATGCGGAAGCTGTTCGCAACGGTTTAACATGAAATCCGCACTGGAGCGGCACATGGCAGTGCATTCGGCGGATCGACTGCACGCCTGCAGTCACTGTTCCAAGCGCTACAAGCGTGCCCAGGATTTGAAATGGCATATGAAGACTCATGCCAATGAGAAGCCCAATGTTTGTGATGTTTGCGGCAAGGCATTTGCCCTGAAATATGTGTTGACCCAGCATATGCGCAGTCATGAGGtTCTTGAGAAGAACTTCAAGTGTGAGACTTGTGGACGTTCATATCTATTTGAGAAGTCTTTGCGGCTCCATCAACGTGTCCACACGGGCAACACCTACTACAAGTGCGATTTGTGCCAGGAGCGTTTTGTGACGCACATTAAGTTTAAAACTCATATGAAAAACGCACATGATACAAACCAGTCGCATACCAAAGATTCGCTGGATGATTTGATTAACATTGTGATTTCCTAA
Protein Sequence: METCRTCARCDFENGNNNYWLDLFHPVRWQSEMAQIRLEFVNWKLQISPNDGLPQKICSDCFTKFCSIYTFRMACQDAQLKLSNIFDNIEAHMLYDKNEDAEGIETATNIETTTTTTTTQNTAIIEETTPMPIEIYVESVNINETSETLPQLEQHTDLAADYNTLNISFACKFCHKPQESYELQHMLLEHISSAHDPDQPYNCPDCAECFQDAASRTVHMKSAHVVKHYVCDVCGKKYGDRHNLQHHIEKYHSETDFECSMCEKRFFTRKSLHYHMNWHKPERQLRCRHNGCDRLFINQRHLKCHEATHSTGSRKSEYCGFCGKAFTHVKTLRWHIYRQHGGEKPFKCAICTEVFDSYAEKRIHMLELHTENLTHQERSECMFQSCRQEFDSEQELIQHMTAEHLQREPAAPVIANNKRVLQRKRERQYTGLFQCGSCSQRFNMKSALERHMAVHSADRLHACSHCSKRYKRAQDLKWHMKTHANEKPNVCDVCGKAFALKYVLTQHMRSHEVLEKNFKCETCGRSYLFEKSLRLHQRVHTGNTYYKCDLCQERFVTHIKFKTHMKNAHDTNQSHTKDSLDDLINIVIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00502704;
90% Identity: iTF_01322820;
80% Identity: -