Tlon000015.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Temnothorax longispinosus
Gene Symbol
L
Assembly
GCA_004794745.1
Location
QBLH01003801.1:26499-97760[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 6.6e-06 0.00052 19.9 1.5 1 23 145 167 145 167 0.98
2 21 0.062 4.8 7.4 4.9 1 23 173 195 173 195 0.98
3 21 1.9e-06 0.00015 21.6 2.3 1 23 201 223 201 223 0.99
4 21 1.4e-05 0.0011 18.9 0.4 1 23 229 251 229 251 0.99
5 21 0.0053 0.41 10.8 2.1 1 23 418 441 418 441 0.94
6 21 0.34 26 5.1 0.0 3 23 454 475 452 475 0.88
7 21 0.95 74 3.6 0.1 3 23 543 563 542 563 0.97
8 21 0.0011 0.086 12.9 0.5 3 23 580 600 578 600 0.95
9 21 0.0012 0.093 12.8 0.6 1 23 609 632 609 632 0.92
10 21 1.8 1.4e+02 2.8 0.2 1 23 637 660 637 660 0.92
11 21 0.061 4.8 7.4 2.7 2 23 741 762 740 762 0.96
12 21 0.012 0.97 9.6 0.1 1 23 767 790 767 791 0.93
13 21 2.6 2e+02 2.3 0.1 2 23 855 878 854 878 0.81
14 21 2.7e-05 0.0021 18.0 1.0 2 23 893 915 892 915 0.96
15 21 0.0018 0.14 12.3 1.3 1 23 924 947 924 947 0.94
16 21 0.73 57 4.0 1.0 2 23 955 976 954 976 0.96
17 21 0.0087 0.68 10.1 0.0 2 23 1140 1162 1139 1162 0.92
18 21 0.058 4.6 7.5 0.3 1 23 1173 1196 1173 1196 0.96
19 21 1.1 86 3.4 0.1 2 23 1209 1230 1208 1230 0.94
20 21 0.018 1.4 9.1 0.1 2 23 1239 1261 1238 1261 0.94
21 21 0.059 4.6 7.5 2.6 1 23 1268 1291 1268 1291 0.97

Sequence Information

Coding Sequence
ATGTCCAGGAGGAAGCAGGCGAAGCCTCGATCTCTCAAACGGGACGAAGAGTGGGACGACGGTAACGAGCAGAATGTCCTGGAGGCGGCCGAACAGGATAACGAAACGACGGCGATTAAGCAGGATGatgaggaggaagaggaagaggaggagctGCAACGAGCGTTTAGTCGTCAGTCAGAAGattaTCTGCAGGATGGCAGGTCAACTTCCGTCCAAGGTCCAGATCTAGAAAATCAGAACAGTCTCGACAGCGAGGCCCTAGGGACCGGAAGTTCCTCTTGGCACAGCGAGGATGGCGGGCCCAACTCGCGTCGCGGTGGCGAGACGCCGTCCTCTTGCGCGACACCGACATCGGCCAGCTTCCCGTCGGAGCCCGAGGTCGACGCTGACGTCGGCGTCAATCCCGACGGCAACAACCCCGCTGCCCCGTACCCCTGCCAGTTCTGTGACAGGACGTTCCCGCGACTTAGCTACCTGAAGAAACACGAACAGAGCCACGGCGATCAGATGCCGTATCGATGCAGTTGGTGTAACAGACTATTCAAGCACAAACGCAGCCGAGATCGTCACGTGAAGCTGCACACCGGGGACAGGCGATACCGCTGCTCGAAATGCGAGGCCGCCTTCTCCAGGAGCGATCACCTGAAGATTCACTTGAAGACGCACGACACCCAGAGGCCTTATCAATGCACGACTTGCACGAGAGGCTACAGCTCAGCCGCGGCCTTAACGTCGCACATGCAATCCCACAAGAAGCATCCCCAATCATCGTCCTCTCAGTCGACCGGCAAGCTCCAGGACATTGACTACGGTAGGAGAAGCGTCTCCTCCCACAGCACGTCGTCCCCGCCGGTGCCGTCGTCGCCTTCGCCGTCGTTGAACCTCACTCTGAACCCGAGGAACGCCATGAAAACGTCGCAGGGTACCGGCAGCACGTCCACCACGCCGATTCTCAACTCGCCCTTGAAGCTCGCCTGCATGTACTGCACCCGGGACTCGTTCACCTGCATGCAGCAGCTACAGATGCACGTGCGCACGATGCACCAGGCGATTCTCAGCGGCGCGGAAGGTCTGGCGCGGCCGCCGTCGCCGAGCAGAACATCGAACGAGCAGCAAGCGGTGTTTTGCTCGCGCGATAAGCCACCCGATCGCCAGGACAGCTCGAAGGACTCGCGTTCAGATCGGAAATACCCGCCTGAGGAGAGAGCCGACAGGCCTGCCGGCGAACGGGACCACTACGAGAACGCCTTCACCTGCGAACAATGTACCATGAAATTCTCCACTCTGGCTTGCCTGCGCGAGCATTCGCTGTCGATACATCGAGTGGACAGTGGTTTCAGCGCGACGATGGTGATATGCCCGTTGTGCGGCATTCCGTGCACTTCGACGGCAGCCTACGCCGAGCATTACGTTCTTCAGCACTGCGAGAATCGTCGACTGGCGCCGACAACCAGCATAGATTACAGCGAGACGAAACTGAACGGCGTTTACGACAGTACTCCGTCGAGAGACTCCAGGGTACCGAGAAGCAGGGACGCCTCGGAAGCCGCTGATCTCACGAATAAACGTCCGACCAGGCCATCCGCGGACGCCGCTGGCGGCTACACCGCCGATACCCTGTTGTGCGGCCAGTGTAACGCCGCGCTGAAGGATTTCGAGTCCTTTCGCGAACACGTGGCCCGGCACCTGCAGGCCGACCATCACAATCAGGAGATATCCAGCAGGCAGCATCTGTGTCCCAAGTGCGAGACTGTTTTCCCGACCCGCGAGGACATGCTGGCCCACTTGACCAAGCACTATCTGGGCCAGGTCAGCAAGGAATTCGCGTGCGGCGCCTGCAAAAAGTTCTACCCGCATCCGGACCAGCTTCAGAGACACTTGTTGGACTCCCACGCCCATCATCTCTACCGTTGCGCTCTGTGCCGAGACACGTTCGACTCCAAGGTGGCGATACAAGTGCATTTCGCGGTCAAGCACAGCCAGGAGTGCCGGATCTACCGATGTAGCGTGTGCACTCTGTCCAACAACGAGAATTCGCCACCGGGAGGGAACGCGGGTTCCGGTGACGGTAGGAGCTTTTTCAGGAGCGAGGCCGAGATGGCGGCCCACGTGCGCAACGTACACGCGCCTCCTCCCGTCGTTCagtctttaataaataacagtcCTGTCGGAGCTGCAACAAGAAGTCCGGCCTCGACGCCCGGCATCGTCGGAACGCGCTGCGTCTTCTGTGGGACATGCTGCAGTTCGGAGCTCGAGCTTCAGCTTCACCTGGCCAGCCACTCGGCCAGTCTCTACAGATGCCCCATCTGCAGAGAAGGCTTTGCGGTGGAATTTCTGTTAGATCGACACGTCGCCCAGGTTCACCATCAGGCACCGCAGGATCATCAGGCGCCGTCAATCAGAAACAGGGAAAACGGACGTGTTCATCGACCTGCCAGAAATCAGGAAGAAGCGAAATCTCTGAAGAGGGGTCGTTCGCCAGCGTCGAGCAACAACAATTCTGTGAACCAGCGCGACAACAACAACAAACGTCCGAATTACGGCACTTCCGGTCAGCAATGCGAGCTCTGCGAACGCGGTGAATTCGCGAACGAGGCCGAGCTGCAGGCACACAAGAAACTCGCCCACACACCCCCGAAGCTGTCCAAGTCTCTATCTACCTTGAGCATGACATGTGGCTATTGCGGCGAGGTCTGTCGCTCGCGAAGCGAGCTGGAATCTCACACGAGGATTCAGCACGCGTCCAACGAACCGGGTGGTCGTCACAAGTGCAATATCTGCGACGAGGTATGCCCGTCCAGCGCGAGCCTGGCCGAGCACAAGCTCCAAAAGCACTGCAAGATCCAGCTGAGCGACACGTGCGTGGTATGTCGCGGTTGTCTGACGTCGGAGAGCCAATTCCTAGATCACGTGCAAAGGCACAGTCTGGGAAACGTGGATCCGCAACAACGACTGGACAGTACGCTGCCTCATCTGCCCGCGCCATGCGTCGTCTGCCGACAGACGCTGATCAGCGATCTGGAATGTCGTCTGCACGCGCGGTATCACCTACGAACGTCCTCGGGATCGCGCAGCGCCGGCTCCAGCCCGACCAGTCCTGGTGGCGGCAAAAGCCAGAATGGTTGCTGCCTCTGCTTGCGCGATTTCGCGGTCGAAGACTTCGTCAATCTACCACCCAATCCTGCCAGTACAAGCGGACAGCTGCTCAGAGTCTGCAAACCGTGCTACATGCGACACTCTCAGGGACTGCCTATTCTGAACTCGACAACCTACGAGCATCAGGCCAAATACGAGGCGGCCTGGCTCGCGAGCAAGGACGGCCAGTGGGACGAGGCCAAGGACAAGTGGGAACACGAAAGAGGAGTCAAGGTGGAGGATCGATCCAGGAACGAGGGAAACGCGAATAAAAAACGGTGCGAAGAGTGCGGGGTGAAATTCGAAGATCCCGAAGAGGCTGAGAAGCACAGGATCGCCGAGCATGAAAAGGCCGCCAGCGGTAACTTGAATACCTACACCTGCATACAGTGTCAAatGTCGTTTCCAACTGAAGCGAAAATTCAGCAACACGTAAGGAAGGAACACTTGGAGGCATCGGGGAAAGCATCCTTGGAGGCTTTACGGTGCCACTTGTGCTTATTTGAGGCCGCCAGTCCTATGCAGCTGCAAATTCACTTAATAGAGCACACTTTCGCCGGTTGTGCCGCCCTTAGCTGTTACATCTGCCAGTCGCTCTTCACAACTCCCATTGGCCTTCAGAATCACATGCTACAGGAACACGGACTGGACGCGCGACCGTACGATTGCTCCAAGTGCACGCTCAAGTTCTTCTTCAGCGCGGAATTGGATCATCACGTATTGACCTTCCACCGTCCAGGGGAAGAGATCCACTCTTCGTCGACCGAGAACGCTCGCGAAAAGAATCGCGAGCCTGAGAAGCGCGATGGTGTAACGGTGAAGGAGGAAGTGGTGCAAGGCGGcaaggaagaagaggaagaggaggaggaagtaAATGTGGATGATCAAGTGGGACAGGGGCAACACGATGAAGTTGGACGAGAGGAGCAGAAGCTGAAGACGGAAATAAACGGCGAGACATCCGGCAGAGTGGAATCGTGA
Protein Sequence
MSRRKQAKPRSLKRDEEWDDGNEQNVLEAAEQDNETTAIKQDDEEEEEEEELQRAFSRQSEDYLQDGRSTSVQGPDLENQNSLDSEALGTGSSSWHSEDGGPNSRRGGETPSSCATPTSASFPSEPEVDADVGVNPDGNNPAAPYPCQFCDRTFPRLSYLKKHEQSHGDQMPYRCSWCNRLFKHKRSRDRHVKLHTGDRRYRCSKCEAAFSRSDHLKIHLKTHDTQRPYQCTTCTRGYSSAAALTSHMQSHKKHPQSSSSQSTGKLQDIDYGRRSVSSHSTSSPPVPSSPSPSLNLTLNPRNAMKTSQGTGSTSTTPILNSPLKLACMYCTRDSFTCMQQLQMHVRTMHQAILSGAEGLARPPSPSRTSNEQQAVFCSRDKPPDRQDSSKDSRSDRKYPPEERADRPAGERDHYENAFTCEQCTMKFSTLACLREHSLSIHRVDSGFSATMVICPLCGIPCTSTAAYAEHYVLQHCENRRLAPTTSIDYSETKLNGVYDSTPSRDSRVPRSRDASEAADLTNKRPTRPSADAAGGYTADTLLCGQCNAALKDFESFREHVARHLQADHHNQEISSRQHLCPKCETVFPTREDMLAHLTKHYLGQVSKEFACGACKKFYPHPDQLQRHLLDSHAHHLYRCALCRDTFDSKVAIQVHFAVKHSQECRIYRCSVCTLSNNENSPPGGNAGSGDGRSFFRSEAEMAAHVRNVHAPPPVVQSLINNSPVGAATRSPASTPGIVGTRCVFCGTCCSSELELQLHLASHSASLYRCPICREGFAVEFLLDRHVAQVHHQAPQDHQAPSIRNRENGRVHRPARNQEEAKSLKRGRSPASSNNNSVNQRDNNNKRPNYGTSGQQCELCERGEFANEAELQAHKKLAHTPPKLSKSLSTLSMTCGYCGEVCRSRSELESHTRIQHASNEPGGRHKCNICDEVCPSSASLAEHKLQKHCKIQLSDTCVVCRGCLTSESQFLDHVQRHSLGNVDPQQRLDSTLPHLPAPCVVCRQTLISDLECRLHARYHLRTSSGSRSAGSSPTSPGGGKSQNGCCLCLRDFAVEDFVNLPPNPASTSGQLLRVCKPCYMRHSQGLPILNSTTYEHQAKYEAAWLASKDGQWDEAKDKWEHERGVKVEDRSRNEGNANKKRCEECGVKFEDPEEAEKHRIAEHEKAASGNLNTYTCIQCQMSFPTEAKIQQHVRKEHLEASGKASLEALRCHLCLFEAASPMQLQIHLIEHTFAGCAALSCYICQSLFTTPIGLQNHMLQEHGLDARPYDCSKCTLKFFFSAELDHHVLTFHRPGEEIHSSSTENAREKNREPEKRDGVTVKEEVVQGGKEEEEEEEEVNVDDQVGQGQHDEVGREEQKLKTEINGETSGRVES