Basic Information

Insect: Pogonomyrmex barbatus
Gene Symbol: znf423
Assembly: GCA_000187915.1
Location: NW:436159-513556[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 6.2e-06 0.00043 19.9 1.5 1 23 144 166 144 166 0.98

2 21 0.058 4 7.4 4.9 1 23 172 194 172 194 0.98

3 21 1.8e-06 0.00012 21.6 2.3 1 23 200 222 200 222 0.99

4 21 0.0001 0.007 16.1 0.2 1 23 228 250 228 250 0.99

5 21 0.006 0.42 10.5 1.8 1 23 418 441 418 441 0.94

6 21 0.11 7.4 6.5 0.0 3 23 454 475 452 475 0.89

7 21 0.89 62 3.6 0.1 3 23 547 567 546 567 0.97

8 21 0.0027 0.19 11.6 0.3 3 23 584 604 582 604 0.95

9 21 0.0041 0.29 11.0 0.2 1 23 613 636 613 636 0.92

10 21 1.7 1.2e+02 2.8 0.2 1 23 641 664 641 664 0.92

11 21 0.43 30 4.6 1.4 2 23 748 769 748 769 0.96

12 21 0.012 0.81 9.6 0.1 1 23 774 797 774 798 0.93

13 21 2.5 1.7e+02 2.3 0.1 2 23 862 885 861 885 0.81

14 21 0.00015 0.011 15.5 1.2 2 23 901 923 900 923 0.95

15 21 0.021 1.5 8.7 0.9 1 23 932 955 932 955 0.93

16 21 0.68 48 4.0 1.0 2 23 963 984 962 984 0.96

17 21 0.035 2.4 8.1 0.1 2 23 1149 1171 1148 1171 0.92

18 21 0.077 5.3 7.0 0.3 1 23 1182 1205 1182 1205 0.96

19 21 1 72 3.4 0.1 2 23 1218 1239 1217 1239 0.94

20 21 0.017 1.2 9.1 0.1 2 23 1248 1270 1247 1270 0.94

21 21 0.055 3.8 7.4 2.6 1 23 1277 1300 1277 1300 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	6.2e-06	0.00043	19.9	1.5	1	23	144	166	144	166	0.98
2	21	0.058	4	7.4	4.9	1	23	172	194	172	194	0.98
3	21	1.8e-06	0.00012	21.6	2.3	1	23	200	222	200	222	0.99
4	21	0.0001	0.007	16.1	0.2	1	23	228	250	228	250	0.99
5	21	0.006	0.42	10.5	1.8	1	23	418	441	418	441	0.94
6	21	0.11	7.4	6.5	0.0	3	23	454	475	452	475	0.89
7	21	0.89	62	3.6	0.1	3	23	547	567	546	567	0.97
8	21	0.0027	0.19	11.6	0.3	3	23	584	604	582	604	0.95
9	21	0.0041	0.29	11.0	0.2	1	23	613	636	613	636	0.92
10	21	1.7	1.2e+02	2.8	0.2	1	23	641	664	641	664	0.92
11	21	0.43	30	4.6	1.4	2	23	748	769	748	769	0.96
12	21	0.012	0.81	9.6	0.1	1	23	774	797	774	798	0.93
13	21	2.5	1.7e+02	2.3	0.1	2	23	862	885	861	885	0.81
14	21	0.00015	0.011	15.5	1.2	2	23	901	923	900	923	0.95
15	21	0.021	1.5	8.7	0.9	1	23	932	955	932	955	0.93
16	21	0.68	48	4.0	1.0	2	23	963	984	962	984	0.96
17	21	0.035	2.4	8.1	0.1	2	23	1149	1171	1148	1171	0.92
18	21	0.077	5.3	7.0	0.3	1	23	1182	1205	1182	1205	0.96
19	21	1	72	3.4	0.1	2	23	1218	1239	1217	1239	0.94
20	21	0.017	1.2	9.1	0.1	2	23	1248	1270	1247	1270	0.94
21	21	0.055	3.8	7.4	2.6	1	23	1277	1300	1277	1300	0.97

Sequence Information

Coding Sequence: ATGTCCAGGAGGAAGCAGGCGAAGCCTCGATCTCTCAAACGGGACGAAGAGTGGGACGACGGTAACGAGCAGAATGTCCTGGAAGCGGCCGAACAGGATAACGAAACGACGGCGATTAAGCATGatgaagaggaggaggaagaggaggagttACAACGAGCGTTCAGCCGTCAGTCAGAAGATTACCTGCAGGATGGTAGGTCGACTTCCGTCCAAGGCCCGGATCTAGAAAATCAGAACAGCCTCGACAGCGAGGCCCTGGGAACCGGAAGTTCCTCATGGCACAGCGAGGATGGCGGGCCCAACTCGCGTCGCGGCGGCGAGACGCCGTCCTCCTGCGCGACGCCGACATCGGCCAGCTTCCCGTCGGAGCCCGAGGTCGACGCCGACGTCGGTGTCAATCCCGACGGCAATAATCCCGCCGCCCCGTACCCCTGCCAATTCTGCGACAGGACATTTCCGCGGCTCAGCTATCTGAAGAAGCACGAACAGAGCCATGGCGATCAGATGCCGTATCGATGCAGTTGGTGCAACAGACTGTTCAAGCATAAACGGAGTCGCGATCGTCACGTGAAGTTGCATACCGGGGACAGACGGTACCGCTGCTCGAAATGTGAGGCCGCCTTCTCCAGAAGCGATCACCTGAAGATCCACTTGAAGACGCACGACACCCAGAGGCCTTATCAGTGCACGGCCTGTACGAGAGGCTACAGCTCAGCCGCGGCCTTAACGTCGCACATGCAATCTCACAAGAAGCATCACCAGTCGTCATCCTCTCAGTCGGCCGGTAAGCTCCAGGATGTCGATTACGGTAGGAGAAGCGTCTCCTCGCACAGCACGTCCTCGCCGCCGgtgccgtcgtcgccgtcgccgtcgctgaACCTCAGCCTGAACCCGAGGAACATCCTGAAGACGTCGCAAGTCACCGGCAGTGCCTCCACCACGCCGATTCTCAACTCGCCCCTGAAGCTCACGTGCATGTACTGCACCCGGGATTCGTTCAGCTGCATACAGCAGCTGCAGATGCACGTGCGTACGATGCACCAGGCCATCCTCAGCGGCGCAGATAGTGGTTTAGCGCGACCACCGTCGCCGAATAGAACGTCGAACGAGCAGCAGGCGGTGTTCTGCTCGCGCGACAAGCCGCCCGATTGTCAGGACGGGCCGAAGGACCCGCGCTCGGACCGGAAGTACCCGCCAGAGGAACGAGCTGACAGACCCGCCGGCGAGCGGGATCACTACGAGAACGCGTTCACCTGCGACCTCTGCACCATGAAATTCTCCACTCTGGCCTGCCTGCGCGACCACTCGCTCTCGATACACCGGGTCGACAGCGGCTTCGGCACGACGATGGTGATATGCCCGCTGTGCGGCATCCCGTGCACCTCGGCGGCGACCTACGCCGAGCATTACGTTCTCCAGCATTGCGAGAATCGCCGACCAGCGCCGACGACCGGTATGGATTACGGCGAGACGAAGCTGAACGGCGTTTACGACGGCGCCGCGATGAGAGACACCAGGATGCCGAAGAACAGGGACGTCCCCGAGGCCGCCGATCTCACGAACAAACGTCCGACCAGACCGTCCGCGGATGCCACCACCACTGCCGCCGCTAGTTACACCGCCGATACTCTTTTGTGCGGGCAGTGCAACGCCGCGCTGAAGGACTTCGAGTCCTTCCGCGAACACGTGGCTCGGCACCTGCAGGCCGACCACCGCAACCAGGAGATCTCCGCCCGGCAGCACTTGTGCCCCAAGTGCGAGGCCGTATTCCCGACCCGCGAAGACATGCTGGCACACCTGACCAAGCACTACCTGGGCCAGGTCAGCAAGGAATACGCATGCGGCGCCTGCAAGAAGCTCTATCCACATCCGGACCAACTCCAGAGGCATCTGCTCGACGCCCACGCGCATCATCTCTACCGTTGCGCCCTGTGCCGGGACACGTTCGACTCCAAGGTGGCGATACAGGTGCACTTCGCGGTCAAGCACAGCCAGGAGTGCCGAATCTATCGATGCAGCGTGTGCGCCGTGTCCAACAATGAGAACTCGCCGCCGGGAAGTGCGAACGCGGCGGCGGTTTCCGGCGACGGCAGGAGCTTCTTCCGGAGCGAGGCCGAGATCGCGGCCCACGTGCGCAACGTGCACGCGCCACCCTCCATCGTTTCGTCCCTGATGAACAGCAGTCCCGTCGGGGCTGCCACGAGAAGTCCGGCTTCAACGCCCGGCGTCGTCGGGGCGCGCTGCGTCTTCTGCGGCATCTGCTGCGGCTCGGAGCTCGAGCTTCAGCTTCACCTGGCCAGCCACTCGGCCAGTCTCTATAGGTGTCCCATTTGCAGGGAGGGTTTCGCGGTGGAGTTCCTGCTGGATCGACACGTAGCTCAGGTCCACCATCAGGCGGTGCAGGATCATCAGACGCCGTTGGTTAGGAACAGGGAAAACGGACGCGTTCAACGATCTAATAGAAATCAGGAGGAAGCGAAATCGTTGAAGAGAGGTCGTTCGCCAGCGTCGAGCAACAACAACTCCGTGAGTCAGCGCGACAACAACAACAAACGTTCGAATTACGGCAACTCCGGTCAGCAATGCGAGCTCTGCGAGCGCGGCGAATTCGCGAATGAAGCCGAGTTGCAGGCGCACAAGAAGCTCGCTCACACGCCACCCAAGCTATCCAACAAGAGTCTGTCCACCTTGAGCATGACGTGCGGCTATTGCGGCGAGATATGTCGCTCGAGAAGCGAGCTGGAATCCCACACGAGACTGCAGCACGCGTCCAACGAGCCGGGCGGACGTCACAAGTGCAACATCTGCGACGAGGTGTGTCCGTCCGGCGCGAGTCTGGCCGAGCACAAGCTGCAGAAACACTGCAAGATCCAGCTGAGCGACACGTGCGTGGTGTGTCGCGGTTGCCTCACGTCGGAGAGCCAGTTCCTGGACCACGTGCAGAGACACAGTCTGGAGAACGTGGACCCGCAGCAACGACTGGACAGCACGCTGCCCCATCTGCCCGCGCCATGCGTCGTCTGCCGTCAGACGCTGATCAGCGACCTGGAGTGTCGTCTGCACGCGCGACATCACCTACGAACGTCCTCGGGTTCTCGCAGCGCCGGCGCCAGCCCGGCCAGTCCCGGCGGCAAAGGCCAGAGTCAGGGTTGCTGCCTCTGCCTGCGCGACTTCGCGGCCGAGGACTTTGTCAATCTGCCGCCCAATCCCGCCAGCACGAGCGGACAGTTACTCAGGGTCTGCAAGCCGTGCTACATGCGACACTCCCAGGGTCTGCCTATTCTGAACTCGACGACCTACGAGCATCGGGCGAAATATGAGGCGACCTGGCTCGCGAACAAAGACGGCCAGTGGGACGGAGCTAAGGACAAGTGGGAGCACGAGAGAGGGTCGCTCAAGGTAGAGGATCGGCCGAGGAACGAGGGAAACGCGGATAAGAAGCGCTGCGAGGAGTGCGGGGTGAAGTTCGAGGATTTCGAAGAGGCGGAGAAGCACCGGCTCGCCGAGCACGAGAAGCCTGGCGGTGGTGGCTCGAATACCTACACCTGTATACAGTGTCAAATGTCATTTCCAAGCGAGGCGAAAATTCAGCAGCACGTGAGAAAGGAACATTTGGATGCATCCGGAAAAGCGTCCTTGGAGGCTTTACGGTGCCACTTGTGCTTATTTGAGGCTGCGAGTCCTATGCAGCTGCAAATTCACTTAATAGAGCACACTTTCGCCGGTTGTGCCGCTCTTAGCTGTTACATCTGCCAGTCGCTCTTCACAACTCCCATTGGCCTTCAGaatCACATGCTGCAGGAACACGGTCTGGACGCGCGACCGTATGATTGTTCCAAGTGCACGCTAAAGTTCTTCTTCAGCGCGGAACTGGACCACCACGTGCTGACCTTCCACCGTTCAGGAGAAAAGACGCAGTCTTCATCGGGCGAGAATATTCGCGAGGTGAAAAATCACGAGTCCGAGAagcgcgacggcggcggcgtaACGGTGAAAGAGGAGGTAATACAAAGCGgcaaggaagaggaggaggaagaggaggaagtgAACGTAGATCAGGTAGGACAAGCGGAACACGGGGAGGCTGGACGAGAGGAGCAGAAACTGAAGACGGAAGTGGACGACGAGGTGACGTCCGGCAGAATGGAATCGTGA
Protein Sequence: MSRRKQAKPRSLKRDEEWDDGNEQNVLEAAEQDNETTAIKHDEEEEEEEELQRAFSRQSEDYLQDGRSTSVQGPDLENQNSLDSEALGTGSSSWHSEDGGPNSRRGGETPSSCATPTSASFPSEPEVDADVGVNPDGNNPAAPYPCQFCDRTFPRLSYLKKHEQSHGDQMPYRCSWCNRLFKHKRSRDRHVKLHTGDRRYRCSKCEAAFSRSDHLKIHLKTHDTQRPYQCTACTRGYSSAAALTSHMQSHKKHHQSSSSQSAGKLQDVDYGRRSVSSHSTSSPPVPSSPSPSLNLSLNPRNILKTSQVTGSASTTPILNSPLKLTCMYCTRDSFSCIQQLQMHVRTMHQAILSGADSGLARPPSPNRTSNEQQAVFCSRDKPPDCQDGPKDPRSDRKYPPEERADRPAGERDHYENAFTCDLCTMKFSTLACLRDHSLSIHRVDSGFGTTMVICPLCGIPCTSAATYAEHYVLQHCENRRPAPTTGMDYGETKLNGVYDGAAMRDTRMPKNRDVPEAADLTNKRPTRPSADATTTAAASYTADTLLCGQCNAALKDFESFREHVARHLQADHRNQEISARQHLCPKCEAVFPTREDMLAHLTKHYLGQVSKEYACGACKKLYPHPDQLQRHLLDAHAHHLYRCALCRDTFDSKVAIQVHFAVKHSQECRIYRCSVCAVSNNENSPPGSANAAAVSGDGRSFFRSEAEIAAHVRNVHAPPSIVSSLMNSSPVGAATRSPASTPGVVGARCVFCGICCGSELELQLHLASHSASLYRCPICREGFAVEFLLDRHVAQVHHQAVQDHQTPLVRNRENGRVQRSNRNQEEAKSLKRGRSPASSNNNSVSQRDNNNKRSNYGNSGQQCELCERGEFANEAELQAHKKLAHTPPKLSNKSLSTLSMTCGYCGEICRSRSELESHTRLQHASNEPGGRHKCNICDEVCPSGASLAEHKLQKHCKIQLSDTCVVCRGCLTSESQFLDHVQRHSLENVDPQQRLDSTLPHLPAPCVVCRQTLISDLECRLHARHHLRTSSGSRSAGASPASPGGKGQSQGCCLCLRDFAAEDFVNLPPNPASTSGQLLRVCKPCYMRHSQGLPILNSTTYEHRAKYEATWLANKDGQWDGAKDKWEHERGSLKVEDRPRNEGNADKKRCEECGVKFEDFEEAEKHRLAEHEKPGGGGSNTYTCIQCQMSFPSEAKIQQHVRKEHLDASGKASLEALRCHLCLFEAASPMQLQIHLIEHTFAGCAALSCYICQSLFTTPIGLQNHMLQEHGLDARPYDCSKCTLKFFFSAELDHHVLTFHRSGEKTQSSSGENIREVKNHESEKRDGGGVTVKEEVIQSGKEEEEEEEEVNVDQVGQAEHGEAGREEQKLKTEVDDEVTSGRMES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01406753;
90% Identity: iTF_00126199;
80% Identity: -