Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: znf423
Assembly: GCA_001594065.1
Location: NW:77779-216524[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 7.6e-06 0.00047 19.9 1.5 1 23 145 167 145 167 0.98

2 21 0.071 4.4 7.4 4.9 1 23 173 195 173 195 0.98

3 21 2.2e-06 0.00013 21.6 2.3 1 23 201 223 201 223 0.99

4 21 0.00012 0.0076 16.1 0.2 1 23 229 251 229 251 0.99

5 21 0.0036 0.22 11.5 2.3 1 23 415 438 415 438 0.96

6 21 0.39 24 5.1 0.0 3 23 451 472 449 472 0.88

7 21 0.75 47 4.2 0.1 3 23 540 560 539 560 0.97

8 21 0.13 7.8 6.6 0.7 3 23 577 597 575 597 0.95

9 21 0.0011 0.071 13.0 0.4 1 23 606 629 606 629 0.92

10 21 2.1 1.3e+02 2.8 0.2 1 23 634 657 634 657 0.92

11 21 0.07 4.3 7.4 2.7 2 23 738 759 737 759 0.96

12 21 0.014 0.88 9.6 0.1 1 23 764 787 764 788 0.93

13 21 3 1.9e+02 2.3 0.1 2 23 852 875 851 875 0.81

14 21 0.00015 0.0092 15.8 1.0 2 23 891 913 890 913 0.96

15 21 0.026 1.6 8.8 0.9 1 23 922 945 922 945 0.93

16 21 0.84 52 4.0 1.0 2 23 953 974 952 974 0.96

17 21 0.0072 0.45 10.5 0.1 2 23 1139 1161 1138 1161 0.92

18 21 0.044 2.7 8.1 0.5 1 23 1172 1195 1172 1195 0.96

19 21 1.3 79 3.4 0.1 2 23 1208 1229 1207 1229 0.94

20 21 0.017 1 9.4 0.2 2 23 1238 1260 1237 1260 0.94

21 21 0.012 0.71 9.9 2.6 1 23 1267 1290 1267 1290 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	7.6e-06	0.00047	19.9	1.5	1	23	145	167	145	167	0.98
2	21	0.071	4.4	7.4	4.9	1	23	173	195	173	195	0.98
3	21	2.2e-06	0.00013	21.6	2.3	1	23	201	223	201	223	0.99
4	21	0.00012	0.0076	16.1	0.2	1	23	229	251	229	251	0.99
5	21	0.0036	0.22	11.5	2.3	1	23	415	438	415	438	0.96
6	21	0.39	24	5.1	0.0	3	23	451	472	449	472	0.88
7	21	0.75	47	4.2	0.1	3	23	540	560	539	560	0.97
8	21	0.13	7.8	6.6	0.7	3	23	577	597	575	597	0.95
9	21	0.0011	0.071	13.0	0.4	1	23	606	629	606	629	0.92
10	21	2.1	1.3e+02	2.8	0.2	1	23	634	657	634	657	0.92
11	21	0.07	4.3	7.4	2.7	2	23	738	759	737	759	0.96
12	21	0.014	0.88	9.6	0.1	1	23	764	787	764	788	0.93
13	21	3	1.9e+02	2.3	0.1	2	23	852	875	851	875	0.81
14	21	0.00015	0.0092	15.8	1.0	2	23	891	913	890	913	0.96
15	21	0.026	1.6	8.8	0.9	1	23	922	945	922	945	0.93
16	21	0.84	52	4.0	1.0	2	23	953	974	952	974	0.96
17	21	0.0072	0.45	10.5	0.1	2	23	1139	1161	1138	1161	0.92
18	21	0.044	2.7	8.1	0.5	1	23	1172	1195	1172	1195	0.96
19	21	1.3	79	3.4	0.1	2	23	1208	1229	1207	1229	0.94
20	21	0.017	1	9.4	0.2	2	23	1238	1260	1237	1260	0.94
21	21	0.012	0.71	9.9	2.6	1	23	1267	1290	1267	1290	0.97

Sequence Information

Coding Sequence: ATGTCCAGGAGGAAGCAGGCAAAACCTCGATCTCTCAAACGGGACGAAGAGTGGGACGACGATAACGAGCAGAATGTCCTGGAGGCGGCCGAACAGGATAACGAAACGACGACGATTAAGCAGGATGatgaggaagaggaggaagaagaggaaCTACAACGAGCATTTAGCTGTCAGTCAGAAGattatcTGCAGGATGGCAGGTCAACTTCCGTCCAAGGTCCAGATCTAGAAAATCAGAATAGCCTCGACAGCGAGGCCTTAGGAACCGGAAGTTCCTCGTGGCACAGCGAGGATGGCGGTCCCAACTCGCGTCGCGGCGGCGAGACGCCGTCCTCCTGCGCGACGCCGACATCGGCCAGCTTCCCGTCGGAACCCGAGGTAGATGCCGATATCAGCGTCAATCCCGACGGCAACAATCCCGCTGCTCCGTATCCTTGCCAATTCTGCGACAGAACGTTTCCGCGGCTTAGCTACCTGAAAAAACACGAACAGAGTCACGGCGATCAGATGCCATATCGGTGCAGTTGGTGCAACAGACTATTCAAGCACAAGCGCAGTCGGGATCGTCACGTGAAGTTACACACCGGAGACAGGAGATACCGCTGCTCGAAATGTGAAGCCGCCTTCTCCAGAAGTGATCACCTGAAAATCCACTTGAAAACACACGATACCCAAAGGCCTTACCAATGCACGGCTTGCACGAGGGGCTACAGCTCAGCCGCTGCGTTAACGTCGCACATGCAGTCTCACAAGAAGCATCACCAGTCATCGTCCTCTCAGTCAACTGGCAAGCTTCAGGACGTGGATTACGGTAGGAGAAGCGTCTCCTCGCACAGCACGTCATCACCGCCGGtaccgtcgtcgccgtcgccatCGTTGAATCTCAGTCTGAACCCGAGGAATGTTCTGAAGACGTCGCAGGGTACCGGCAGTACCTCCACCACACCGATTCTCAACTCGCCCCTGAAGCTCGCCTGCATGTATTGCACCCGGGATTCGTTCAGCTGCATGCAGCAGCTGCAGATGCACGTACGCACGATGCACCAAGCCATCCTTAGCGGTGCGGAGAGTCTGGCGCGACCATCTTCGCCGAACAGAACGTCGAGCGAGCAGCAAGCGGTGTTCTGTTCGCGCGACAAGCCACCCGATGTTTCGAAGGACCCGCGCTCGGATCGGAAATACCCGCCCGAGGAAAGAGCCGATAGGCCTGCCGGCGAACGGGACCACTATGAGAACGCATTTACCTGCGACCAATGCACTATGAAATTTTCCACCCTGGCCTGCCTGCGCGATCATTCGCTGACGATACACCGAGTGGACGGTAGTTTCAGCGCGACGATGGTGATATGCCCGCTGTGCGGTATTCCGTGCACCTCAACGGCAGCCTATGCCGAGCACTACGTTCTCCAGCATTGCGAGAATCGTCGCCCGGCACAGGCAACCGGTATAGATTATAGCGAGACAAAACTGAACGGCGTTTATAACAGTACTCCAGCGAGAGACTCCAGAATGCCGAGAAGCAGAGATGCTCCGGAAGCCGCCGACCTCACGAATAAACGTCCGACCCGACCATCCGCGGACGCCACTGGCAGCTACACCGCCGACACTCTGTTGTGCGGCCAATGCGACGCCGCGCTGAAGGATTTCGAATCCTTTCGCGAGCACGTGGCTCGGCACCTGCAGGCCGACCATCGTAATCAGGAGATGTCCAGCAGGCAACATCTCTGTCCCAAGTGCGAGACGGTCTTCCTATCCCGCGAGGACATGCTGGCCCACCTGACCAAGCACTACCTCGGACAGATCAGCAAAGAATTCGCGTGCGGCGCCTGTAAGAAGTTCTATCCGCATCCAGATCAGCTTCAAAGACACTTGTTGGACGCTCATGCGCATCATCTGTACCGTTGCGCTCTATGCCGGGACACGTTTGACTCCAAGGTGGCGATACAGGTGCACTTTGCAGTCAAGCACAGCCAGGAGTGCCGGATCTATCGATGTAGCGTATGCACGCTGTCCAACAACGAAAACTCACCACCGGGAACCAATGTGGCTCCCGGTGACAACAGGAGCTTCTTCAGAAGCGAAACCGAGATGGCGGCCCATGTGCGTAACGTGCACGCGCCTCCTCCCGTCGTCCCGTCCTTAACGAACAGTAGTCCTGTCGGAACGGCAACAAGGAGTCCAGCTTCGACGCCCGGTGTTGTCACAACGCGTTGCGTCTTCTGCGGAACCTGTTGCAGTTCGGAACTTGAACTTCAACTTCACCTGGCTAGTCACTCGGCCAGTCTCTACAGATGTCCCATTTGCAGAGAGGGTTTCGCGGTGGAGTTCCTGTTGGACCGACATGTCGCTCAGGTTCATCACCAGACAGCGCAAAATCACCAAGTGCCGTCGGTTAGAAACAGGGAGAACGGACGCGTCCATCGACCGGCTAGAAATCAGGAAGAAACAAAATCTCTGAAGAGGGGCCGTTCACCAGCTTCAAGCAACAACAACTCCCTAAATCAGCGCGACAACAATAACAAACGTTCAAATTATGGTACTTCCGGTCAACAATGCGAGCTTTGCGAACGCGGTGAATTTGCAAATGAAGCCGAGCTGCAAGCACACAAGAAACTAGCTCACACACCCCCCAAGCTATCCAACAAGGCTCTATCTACCTTAAGCATGACTTGTGGCTATTGCGGCGAAGTTTGTCGCTCGCGAAACGAGCTGGAATCTCACACGAGGATCCAGCACGCGTCTAACGAGCCTGGTGGACGTCACAAATGCAACATCTGCGACGAGGTATGCCCGTCCGGCGCGAGTCTGGCCGAGCACAAGCTCCAGAAACACTGCAAGATTCAGCTGAGCGACACGTGCGTGGTGTGTCGTGGTTGTCTTACGTCGGAAAGCCAGTTCCTGGACCACGTGCAAAGGCATAGCGTGGACAACGTGGATCCGCAACAACGACTGGACAGTACGCTGCCTCATCTTCCCGCGCCGTGCGTCGTTTGCCGGCAAACCTTGATCAGCGATTTGGAATGTCGACTGCACGCACGGTATCACCTACGAACGTCTTCGAGTTTGCGTAGTGCTGGTTCCAGCCCGACTAGTCCTGGTGGTGACAAAGGTCAAAATCAAGGTTGCTGCCTCTGCTTGCGCGACTTTGCAGCCGAGGATTTTGTCAATCTTCCACCCAATCCTGCCAGTACAAGCGGACAGCTGCTCAGAGTTTGTAAACCGTGCTACATGCGACACTCTCAGGGACTACCTATTTTGAACTCAACAACTTATGAACATCGAGCCAAATACGAGACAACTTGGCTCGCGAGCAAGGACGGCCAGTGGGACGAAACCAAGGATAAGTGGGAGCACGAGAGAGGACTCAAAGCAGAGGACCGATCCAGGAACGAAGGCAACGCGAATAAGAAACGATGCGAAGATTGCGGGGTGAAATTTGAAGATTCCGAAGAGGCGGAAAAGCACAGAATCGCCAAGCACGGAAAAATTGCCGGAGGTGCCTCAAATACCTACACCTGCATACAGTGTCAAGTATCATTTTCAACTGAAGCCAAGATTCAGCAACACGTGAGGAAAGAACACTTGGAGGCATCTGGAAAAGCATCCTTGGAGGCTTTACGTTGTCACCTGTGCTTATTCGAGGCCGCCAGTCCTATGCAGCTACAAATTCACTTAATAGAACACACTTTCGCCGGTTGTGCCGCTCTTAGCTGTTATATCTGCCAGTCGCTCTTCACAACTCCCATGGGTCTTCAGAATCATATGCTGCAGGAACACGGACTAGACGCGAGACCGTACGATTGCTCCAAGTGCACACTCAAATTCTTCTTCAGCGCGGAACTAGAACATCACGTACTGACCTTTCACCGTCCGGGAGAAGAAATCCACCCTTCACCGGCTGAAAGCGTTCATGAAAGGAAGACTCGCGAGTCGAAGAAGCGCGACGGTAGTGTAACGATAAAGGAGGAAGTGGTGCAAGGCGATAAGGAAAAGgtggaggaggaagaggaggaagtGAACGTGGACGATCCGATGGGATTGGGGAAACACGAAGAGGCTGAACGAGACGAACAGAAACTGAAGACAGAAGTAAACAGCGAGGCGACATCCGGCAGGATGGAATCGTGA
Protein Sequence: MSRRKQAKPRSLKRDEEWDDDNEQNVLEAAEQDNETTTIKQDDEEEEEEEELQRAFSCQSEDYLQDGRSTSVQGPDLENQNSLDSEALGTGSSSWHSEDGGPNSRRGGETPSSCATPTSASFPSEPEVDADISVNPDGNNPAAPYPCQFCDRTFPRLSYLKKHEQSHGDQMPYRCSWCNRLFKHKRSRDRHVKLHTGDRRYRCSKCEAAFSRSDHLKIHLKTHDTQRPYQCTACTRGYSSAAALTSHMQSHKKHHQSSSSQSTGKLQDVDYGRRSVSSHSTSSPPVPSSPSPSLNLSLNPRNVLKTSQGTGSTSTTPILNSPLKLACMYCTRDSFSCMQQLQMHVRTMHQAILSGAESLARPSSPNRTSSEQQAVFCSRDKPPDVSKDPRSDRKYPPEERADRPAGERDHYENAFTCDQCTMKFSTLACLRDHSLTIHRVDGSFSATMVICPLCGIPCTSTAAYAEHYVLQHCENRRPAQATGIDYSETKLNGVYNSTPARDSRMPRSRDAPEAADLTNKRPTRPSADATGSYTADTLLCGQCDAALKDFESFREHVARHLQADHRNQEMSSRQHLCPKCETVFLSREDMLAHLTKHYLGQISKEFACGACKKFYPHPDQLQRHLLDAHAHHLYRCALCRDTFDSKVAIQVHFAVKHSQECRIYRCSVCTLSNNENSPPGTNVAPGDNRSFFRSETEMAAHVRNVHAPPPVVPSLTNSSPVGTATRSPASTPGVVTTRCVFCGTCCSSELELQLHLASHSASLYRCPICREGFAVEFLLDRHVAQVHHQTAQNHQVPSVRNRENGRVHRPARNQEETKSLKRGRSPASSNNNSLNQRDNNNKRSNYGTSGQQCELCERGEFANEAELQAHKKLAHTPPKLSNKALSTLSMTCGYCGEVCRSRNELESHTRIQHASNEPGGRHKCNICDEVCPSGASLAEHKLQKHCKIQLSDTCVVCRGCLTSESQFLDHVQRHSVDNVDPQQRLDSTLPHLPAPCVVCRQTLISDLECRLHARYHLRTSSSLRSAGSSPTSPGGDKGQNQGCCLCLRDFAAEDFVNLPPNPASTSGQLLRVCKPCYMRHSQGLPILNSTTYEHRAKYETTWLASKDGQWDETKDKWEHERGLKAEDRSRNEGNANKKRCEDCGVKFEDSEEAEKHRIAKHGKIAGGASNTYTCIQCQVSFSTEAKIQQHVRKEHLEASGKASLEALRCHLCLFEAASPMQLQIHLIEHTFAGCAALSCYICQSLFTTPMGLQNHMLQEHGLDARPYDCSKCTLKFFFSAELEHHVLTFHRPGEEIHPSPAESVHERKTRESKKRDGSVTIKEEVVQGDKEKVEEEEEEVNVDDPMGLGKHEEAERDEQKLKTEVNSEATSGRMES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01406753;
90% Identity: iTF_00182841;
80% Identity: -