Basic Information

Insect: Temnothorax rugatulus
Gene Symbol: L
Assembly: GCA_035220575.1
Location: JASTWL010000273.1:538219-554238[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.1e-05 0.0018 20.0 1.5 1 23 92 114 92 114 0.98

2 20 0.1 17 7.5 4.9 1 23 120 142 120 142 0.98

3 20 3.1e-06 0.00052 21.7 2.3 1 23 148 170 148 170 0.99

4 20 2.3e-05 0.0038 18.9 0.4 1 23 176 198 176 198 0.99

5 20 0.0091 1.5 10.8 2.1 1 23 365 388 365 388 0.94

6 20 1.6 2.6e+02 3.7 0.1 3 23 470 490 469 490 0.97

7 20 0.0018 0.3 13.0 0.5 3 23 507 527 505 527 0.95

8 20 0.002 0.33 12.9 0.6 1 23 536 559 536 559 0.92

9 20 3 5e+02 2.9 0.2 1 23 564 587 564 587 0.92

10 20 0.1 17 7.5 2.7 2 23 668 689 667 689 0.96

11 20 0.02 3.4 9.7 0.1 1 23 694 717 694 718 0.93

12 20 4.3 7.2e+02 2.3 0.1 2 23 782 805 781 805 0.81

13 20 4.4e-05 0.0074 18.0 1.0 2 23 820 842 819 842 0.96

14 20 0.0029 0.48 12.3 1.3 1 23 851 874 851 874 0.94

15 20 1.2 2e+02 4.1 1.0 2 23 882 903 881 903 0.96

16 20 0.014 2.4 10.2 0.0 2 23 1068 1090 1067 1090 0.92

17 20 0.096 16 7.5 0.3 1 23 1101 1124 1101 1124 0.96

18 20 1.8 3e+02 3.5 0.1 2 23 1137 1158 1136 1158 0.94

19 20 0.029 4.9 9.2 0.1 2 23 1167 1189 1166 1189 0.94

20 20 0.097 16 7.5 2.6 1 23 1196 1219 1196 1219 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.1e-05	0.0018	20.0	1.5	1	23	92	114	92	114	0.98
2	20	0.1	17	7.5	4.9	1	23	120	142	120	142	0.98
3	20	3.1e-06	0.00052	21.7	2.3	1	23	148	170	148	170	0.99
4	20	2.3e-05	0.0038	18.9	0.4	1	23	176	198	176	198	0.99
5	20	0.0091	1.5	10.8	2.1	1	23	365	388	365	388	0.94
6	20	1.6	2.6e+02	3.7	0.1	3	23	470	490	469	490	0.97
7	20	0.0018	0.3	13.0	0.5	3	23	507	527	505	527	0.95
8	20	0.002	0.33	12.9	0.6	1	23	536	559	536	559	0.92
9	20	3	5e+02	2.9	0.2	1	23	564	587	564	587	0.92
10	20	0.1	17	7.5	2.7	2	23	668	689	667	689	0.96
11	20	0.02	3.4	9.7	0.1	1	23	694	717	694	718	0.93
12	20	4.3	7.2e+02	2.3	0.1	2	23	782	805	781	805	0.81
13	20	4.4e-05	0.0074	18.0	1.0	2	23	820	842	819	842	0.96
14	20	0.0029	0.48	12.3	1.3	1	23	851	874	851	874	0.94
15	20	1.2	2e+02	4.1	1.0	2	23	882	903	881	903	0.96
16	20	0.014	2.4	10.2	0.0	2	23	1068	1090	1067	1090	0.92
17	20	0.096	16	7.5	0.3	1	23	1101	1124	1101	1124	0.96
18	20	1.8	3e+02	3.5	0.1	2	23	1137	1158	1136	1158	0.94
19	20	0.029	4.9	9.2	0.1	2	23	1167	1189	1166	1189	0.94
20	20	0.097	16	7.5	2.6	1	23	1196	1219	1196	1219	0.97

Sequence Information

Coding Sequence: ATGCTCTTCAAAGGCAATAGTTCACGGCTAGAATTGCTGATAGGAAAGATCCACGCGCACAAGGAACCGTCACAGGACGAGCAACACAAGTCTAAAGAGGCCCTAGGAACCGGAAGTTCCTCTTGGCACAGCGAGGATGGCGGGCCCAACTCGCGTCGCGGTGGCGAGACGCCGTCCTCCTGCGCGACACCGACATCGGCCAGCTTCCCGTCGGAGCCCGAGGTCGACGCTGACGTCGGCGTCAATCCCGACGGCAACAACCCCGCTGCCCCGTACCCCTGCCAGTTCTGCGACAGGACGTTTCCACGGCTGAGCTACCTGAAGAAACACGAACAGAGCCACGGCGATCAGATGCCGTATCGATGCAGTTGGTGTAACAGACTATTCAAGCACAAACGCAGCCGAGATCGTCACGTGAAGCTGCACACCGGGGACAGGCGATACCGCTGCTCGAAATGCGAGGCCGCCTTCTCCAGGAGCGATCACCTGAAGATTCACTTGAAGACGCACGACACCCAGAGGCCTTACCAATGCACGACTTGCACGAGAGGCTACAGCTCAGCCGCGGCCTTAACGTCGCACATGCAATCCCACAAGAAGCATCCCCAATCATCGTCCTCTCAGTCGACCGGCAAGCTCCAGGACATCGACTACGGTAGGAGAAGCGTCTCCTCCCACAGCACGTCGTCACCGCCGgtgccgtcgtcgccgtcgccgtcgttgaACCTCACTCTGAACCCGAGGAACGCCCTGAAAACGTCGCAGGGTACCGGCAGCACGTCCACCACGCCGATTCTCAACTCGCCCTTGAAGCTCGCCTGCATGTACTGCACCCGGGACTCGTTCAGCTGCATGCAGCAGCTACAGATGCACGTGCGCACGATGCACCAGGCGATCCTCAGCGGCGCGGAGGGTCTGGCGCGGCCGCCGTCGCCGAGCAGAACATCGAACGAGCAGCAAGCGGTGTTTTGCTCGCGCGATAAGCCACCCGATCGCCAGGACAGCTCGAAGGACTCGCGTTCAGATCGGAAATACCCGCCTGAGGAGAGAGCCGACAGGCCTGCCGGCGAACGAGACCACTACGAGAACGCCTTCACCTGCGACCAATGTACCATGAAATTCTCCACTCTGGCCTGCCTGCGCGAGCATTCGCTGTCGATACATCGAGTGGACAGTGCCTACGCCGAGCATTACGTTCTTCAGCACTGCGAGAATCGTCGACTGGCGCCGACAACCAGCATAGATTACAGCGAGACGAAACTGAACGGCGTTTACGACAGTGCTCCATCGAGAGACTCCAGGGTACCGAGAAGCATGGACGCCTCGGAGGCCGCCGATCTCACGAATAAACGTCCGACCAGGCCATCCGCGGACGCCGCTGGCGGCTACACCGCCGATACCCTGTTGTGCGGCCAGTGTAACGCCGCGCTGAAGGATTTTGAGTCCTTTCGCGAACACGTGGCTCGGCACCTGCAGGCCGACCACCACAATCAGGAGATATCCAGCAGGCAGCATCTGTGTCCCAAGTGCGAGACTGTTTTCCCGACCCGCGAGGACATGCTGGCCCACCTGACCAAGCACTATCTGGGCCAGGTCAGCAAGGAATTCGCGTGCGGCGCCTGCAAAAAGTTCTACCCGCATCCGGACCAGCTTCAGAGACACTTGTTGGACTCCCACGCCCATCATCTCTACCGTTGCGCTCTGTGCCGAGACACGTTCGACTCCAAGGTGGCGATACAAGTGCATTTCGCGGTCAAGCACAGCCAGGAGTGCCGGATTTACCGATGTAGCGTGTGCACTCTGTCCAACAACGAGAATTCGCCACCGGGAGGGAACGCGGGTTCCGGTGACGGTAGGAGCTTTTTCAGGAGCGAGGCCGAGATGGCGGCCCACGTGCGCAACGTACACGCGCCTCCTCCCGTCGTCCAGTCTTTAATAAATAACAGTCCTGTCGGAGCTGCAACAAGAAGTCCGGCCTCGACGCCCGGCATCGTCGGAACGCGCTGCGTCTTCTGTGGGACATGCTGCAGTTCGGAGCTCGAGCTTCAGCTTCACCTGGCCAGCCACTCGGCCAGTCTCTACAGGTGTCCCATCTGCAGAGAAGGCTTTGCGGTGGAATTTCTGTTAGATCGACACGTCGCCCAGGTTCACCATCAGGCAGCGCAGGATCACCAGGCGCCGTCAATCAGAAACAGGGAAAACGGACGTGTTCATCGACCTGCCAGAAATCAGGAAGAAGCGAAGTCTCTGAAGAGGGGTCGTTCGCCAGCGTCAAGCAACAACAATTCTGTGAACCAGCGCGACAACAACAACAAACGTCCGAATTACGGCACTTCCGGTCAGCAATGCGAGCTCTGCGAGCGCGGTGAATTCGCGAACGAGGCCGAGCTGCAGGCACACAAGAAACTCGCCCACACACCCCCGAAGCTGTCCAAGTCTCTATCTACCTTGAGCATGACATGTGGCTATTGCGGCGAGGTCTGTCGCTCGCGAAGCGAGCTGGAATCTCACACGAGGATTCAGCACACGTCCAATGAACCGGGTGGTCGTCACAAGTGCAATATCTGCGACGAGGTGTGCCCGTCCAGCGCGAGCCTGGCCGAGCACAAGCTCCAGAAGCACTGCAAGATCCAACTGAGCGATACGTGCGTGGTGTGTCGCGGTTGTCTCACGTCGGAGAGCCAATTCCTAGACCACGTGCAAAGGCACAGTCTGGGGAACGTGGATCCGCAACAACGACTGGACAGTACGCTGCCTCATCTGCCCGCGCCATGCGTCGTCTGCCGACAGACGCTCATCAGCGATCTGGAATGTCGTCTGCACGCGCGGTATCATCTACGAACGTCCTCGGGATCGCGCAGCGCCGGCTCCAGCCCGACCAGTCCTGGTGGTGGCAAAAGCCAGAATCAAGGTTGCTGCCTCtgcttgcgcgatttcgcggcCGAGGACTTCGTCAATCTACCACCCAATCCTGCTAGTACAAGCGGACAGCTGCTCAGAGTCTGCAAACCGTGCTACATGCGACACTCTCAGGGACTGCCTATTCTGAACTCGATAACCTACGAGCATCAGGCCAAATACGAGGCGGCCTGGCTCGCGAGCAAGGACGGCCAGTGGGACGAGGCCAAGGATAAGTGGAAACACGAAAGAGGAATCAAGGTGGAGGATCGATCCAGGAACGAAGGAAACGCGAATAAGAAACGGTGCGAAGAGTGCGGGGTGAAGTTCGAAGATCCTGAAGAGGCTGAGAAGCACAGGATCGCCGAGCATGAAAAGACCGTCAGCGGTAACTTGAATACCTACACCTGCATACAGTGTCAAATGTCGTTTCCAACTGAAGCGAAAATTCAGCAACACGTAAGGAAGGAACACTTGGAGGTATCGGGGAAAGCATCCTTGGAGGCTTTACGGTGCCACTTGTGCTTATTTGAGGCCGCCAGTCCTATGCAGCTGCAAATTCACTTAATAGAGCACACTTTCGCCGGTTGTGCCGCCCTTAGCTGTTACATCTGCCAGTCGCTCTTCACAACTCCCATTGGCCTTCAGAATCACATGCTACAAGAACACGGACTGGACGCGCGACCGTACGATTGCTCCAAGTGCACGCTCAAGTTCTTCTTCAGCGCGGAATTGGATCATCACGTACTGACCTTCCACCGTCCAGGGGAAGAGATCCACTCTTCGTCGACCGAGAACGCTCGCGAAAAGAATCGCGAGCCTGAGAAGCGCGATAGTGGTGTAACGGTGAAGGAGGAAGTGGTGCAAGGCGgcaaggaagaagaggaagaggaggaggaagtaaATGTGGATGATCAAGTGGGACAGGGGCAACACGAAGAAGTTGGACGAGAGGAGCAGAAGCTGAAGACGGAAGTAAACGGCGAGACATCCGGCAGAGTGGAATCGTGA
Protein Sequence: MLFKGNSSRLELLIGKIHAHKEPSQDEQHKSKEALGTGSSSWHSEDGGPNSRRGGETPSSCATPTSASFPSEPEVDADVGVNPDGNNPAAPYPCQFCDRTFPRLSYLKKHEQSHGDQMPYRCSWCNRLFKHKRSRDRHVKLHTGDRRYRCSKCEAAFSRSDHLKIHLKTHDTQRPYQCTTCTRGYSSAAALTSHMQSHKKHPQSSSSQSTGKLQDIDYGRRSVSSHSTSSPPVPSSPSPSLNLTLNPRNALKTSQGTGSTSTTPILNSPLKLACMYCTRDSFSCMQQLQMHVRTMHQAILSGAEGLARPPSPSRTSNEQQAVFCSRDKPPDRQDSSKDSRSDRKYPPEERADRPAGERDHYENAFTCDQCTMKFSTLACLREHSLSIHRVDSAYAEHYVLQHCENRRLAPTTSIDYSETKLNGVYDSAPSRDSRVPRSMDASEAADLTNKRPTRPSADAAGGYTADTLLCGQCNAALKDFESFREHVARHLQADHHNQEISSRQHLCPKCETVFPTREDMLAHLTKHYLGQVSKEFACGACKKFYPHPDQLQRHLLDSHAHHLYRCALCRDTFDSKVAIQVHFAVKHSQECRIYRCSVCTLSNNENSPPGGNAGSGDGRSFFRSEAEMAAHVRNVHAPPPVVQSLINNSPVGAATRSPASTPGIVGTRCVFCGTCCSSELELQLHLASHSASLYRCPICREGFAVEFLLDRHVAQVHHQAAQDHQAPSIRNRENGRVHRPARNQEEAKSLKRGRSPASSNNNSVNQRDNNNKRPNYGTSGQQCELCERGEFANEAELQAHKKLAHTPPKLSKSLSTLSMTCGYCGEVCRSRSELESHTRIQHTSNEPGGRHKCNICDEVCPSSASLAEHKLQKHCKIQLSDTCVVCRGCLTSESQFLDHVQRHSLGNVDPQQRLDSTLPHLPAPCVVCRQTLISDLECRLHARYHLRTSSGSRSAGSSPTSPGGGKSQNQGCCLCLRDFAAEDFVNLPPNPASTSGQLLRVCKPCYMRHSQGLPILNSITYEHQAKYEAAWLASKDGQWDEAKDKWKHERGIKVEDRSRNEGNANKKRCEECGVKFEDPEEAEKHRIAEHEKTVSGNLNTYTCIQCQMSFPTEAKIQQHVRKEHLEVSGKASLEALRCHLCLFEAASPMQLQIHLIEHTFAGCAALSCYICQSLFTTPIGLQNHMLQEHGLDARPYDCSKCTLKFFFSAELDHHVLTFHRPGEEIHSSSTENAREKNREPEKRDSGVTVKEEVVQGGKEEEEEEEEVNVDDQVGQGQHEEVGREEQKLKTEVNGETSGRVES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01406753;
90% Identity: iTF_00126199;
80% Identity: -