Basic Information

Insect: Pogonomyrmex californicus
Gene Symbol: znf423
Assembly: GCA_017141365.1
Location: JAEVLP010000085.1:59727-77134[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 9e-06 0.0013 19.9 1.5 1 23 92 114 92 114 0.98

2 21 0.084 13 7.4 4.9 1 23 120 142 120 142 0.98

3 21 2.6e-06 0.00038 21.6 2.3 1 23 148 170 148 170 0.99

4 21 0.00015 0.022 16.1 0.2 1 23 176 198 176 198 0.99

5 21 0.0087 1.3 10.5 1.8 1 23 366 389 366 389 0.94

6 21 0.15 23 6.6 0.0 3 23 402 423 400 423 0.89

7 21 0.62 93 4.7 0.2 1 23 493 515 493 515 0.94

8 21 0.0039 0.58 11.6 0.3 3 23 532 552 530 552 0.95

9 21 0.006 0.89 11.0 0.2 1 23 561 584 561 584 0.92

10 21 2.5 3.7e+02 2.8 0.2 1 23 589 612 589 612 0.92

11 21 0.63 94 4.7 1.4 2 23 696 717 696 717 0.96

12 21 0.017 2.5 9.6 0.1 1 23 722 745 722 746 0.93

13 21 3.6 5.3e+02 2.3 0.1 2 23 810 833 809 833 0.81

14 21 0.00022 0.033 15.6 1.2 2 23 849 871 848 871 0.95

15 21 0.031 4.6 8.8 0.9 1 23 880 903 880 903 0.93

16 21 1 1.5e+02 4.1 1.0 2 23 911 932 910 932 0.96

17 21 0.051 7.6 8.1 0.1 2 23 1097 1119 1096 1119 0.92

18 21 0.21 31 6.2 0.2 1 23 1130 1153 1130 1153 0.95

19 21 1.5 2.2e+02 3.5 0.1 2 23 1166 1187 1165 1187 0.94

20 21 0.024 3.6 9.1 0.1 2 23 1196 1218 1195 1218 0.94

21 21 0.08 12 7.5 2.6 1 23 1225 1248 1225 1248 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	9e-06	0.0013	19.9	1.5	1	23	92	114	92	114	0.98
2	21	0.084	13	7.4	4.9	1	23	120	142	120	142	0.98
3	21	2.6e-06	0.00038	21.6	2.3	1	23	148	170	148	170	0.99
4	21	0.00015	0.022	16.1	0.2	1	23	176	198	176	198	0.99
5	21	0.0087	1.3	10.5	1.8	1	23	366	389	366	389	0.94
6	21	0.15	23	6.6	0.0	3	23	402	423	400	423	0.89
7	21	0.62	93	4.7	0.2	1	23	493	515	493	515	0.94
8	21	0.0039	0.58	11.6	0.3	3	23	532	552	530	552	0.95
9	21	0.006	0.89	11.0	0.2	1	23	561	584	561	584	0.92
10	21	2.5	3.7e+02	2.8	0.2	1	23	589	612	589	612	0.92
11	21	0.63	94	4.7	1.4	2	23	696	717	696	717	0.96
12	21	0.017	2.5	9.6	0.1	1	23	722	745	722	746	0.93
13	21	3.6	5.3e+02	2.3	0.1	2	23	810	833	809	833	0.81
14	21	0.00022	0.033	15.6	1.2	2	23	849	871	848	871	0.95
15	21	0.031	4.6	8.8	0.9	1	23	880	903	880	903	0.93
16	21	1	1.5e+02	4.1	1.0	2	23	911	932	910	932	0.96
17	21	0.051	7.6	8.1	0.1	2	23	1097	1119	1096	1119	0.92
18	21	0.21	31	6.2	0.2	1	23	1130	1153	1130	1153	0.95
19	21	1.5	2.2e+02	3.5	0.1	2	23	1166	1187	1165	1187	0.94
20	21	0.024	3.6	9.1	0.1	2	23	1196	1218	1195	1218	0.94
21	21	0.08	12	7.5	2.6	1	23	1225	1248	1225	1248	0.97

Sequence Information

Coding Sequence: ATGCTCTTCAAAGGCAACAGTTCACGGCTGGAACTGCTGATAGGGAAGATTCACGCACACAAGGAACCACAACAGGACGAACAAGGCAAATCTAAAGAGGCCCTGGGAACCGGAAGTTCCTCATGGCACAGCGAGGATGGCGGGCCCAACTCGCGTCGCGGCGGCGAGACGCCGTCCTCCTGCGCGACGCCGACATCGGCCAGCTTCCCGTCGGAGCCCGAGGTCGACGCCGACGTCGGTGTCAATCCCGACGGCAATAATCCCGCCGCCCCGTACCCCTGCCAATTCTGCGACAGGACATTTCCGCGGCTCAGCTATCTGAAGAAGCACGAACAGAGCCACGGCGATCAGATGCCATATCGATGCAGTTGGTGCAACAGACTGTTCAAGCATAAGCGTAGTCGCGATCGTCACGTGAAGTTGCATACCGGGGACAGACGGTACCGCTGCTCGAAATGTGAGGCCGCCTTCTCCAGAAGCGATCACCTGAAGATCCACTTGAAGACGCACGACACCCAGAGGCCTTATCAGTGCACGGCCTGTACGAGAGGCTACAGCTCAGCCGCGGCCTTAACGTCGCACATGCAATCTCACAAGAAGCATCACCAGTCGTCATCCTCTCAGTCGGCCGGTAAGCTCCAGGATGTAGATTACGGTAGGAGAAGCGTCTCCTCGCACAGCACGTCCTCGCCGCCGGTGCCGTCGTCGCCGTCGCCGTCGCTGAACCTCAGCCTGAACCCGAGGAACGTCCTGAAGACGTCGCAAGTCACCGGCAGTGCCTCCACCACGCCGATTCTCAACTCGCCCCTGAAGCTCACGTGCATGTACTGCACCCGGGATTCGTTCAGCTGCATACAGCAGCTGCAGATGCACGTGCGCACGATGCACCAGGCCATCCTCAGCGGCGCAGACAGTGGTCTAGCGCGACCACCGTCGCCGAATAGAACGTCGAACGAGCAGCAGGCGGTGTTCTGCTCGCGCGACAAGCCGCCCGATTGTCAGGACGGGCCGAAGGAGCCGCGCTCGGACCGGAAGTACCCGCCAGAGGAGCGAGCTGACAGACCCGCCGGCGAGCGGGATCACTACGAGAACGCGTTCACCTGCGACCTCTGCACCATGAAATTCTCCACCCTGGCCTGCCTGCGCGACCACTCGCTCTCGATACACCGGGTCGACAGCGGCTTCGGCGCGACGATGGTGATATGCCCGCTGTGCGGCATCCCGTGCACCTCGGCGGCGACCTACGCCGAGCATTACGTTCTCCAGCATTGCGAGAATCGCCGACCAGCGCCGACGGCCGGTATGGATTACGGCGAGACGAAGCTGAACGGCGTTTACGACGGCGCCGCGATGAGAGACACCAGGATGCCGAAGAACAGGGACGTCCCCGAGGCCGCCGATCTCACGAACAAACGTCCGACCAGACCGTCCGCGGATGCCACCACCACTGCCGCCGCTAGTTACACCGCCGACACTTTTTTGTGCGGGCAGTGCAACGCCGCGCTGAAGGACTTCGAGTCCTTCCGCGAACACGTGGCTCGGCACCTGCAGGCCGACCACCGCAACCAGGAGATCTCCGCCCGGCAGCACTTGTGCCCCAAGTGCGAGGCCGTTTTCCCGACCCGCGAAGACATGCTGGCACACCTGACCAAGCACTACCTGGGCCAGGTCAGCAAGGAATACGCATGCGGCGCCTGCAAGAAGCTCTATCCACATCCGGACCAACTCCAGAGGCATCTGCTCGACGCCCACGCGCATCATCTCTACCGTTGCGCCCTGTGCCGGGACACGTTCGACTCCAAGGTGGCGATACAGGTGCACTTCGCGGTCAAGCACAGCCAGGAGTGCCGAATCTATCGATGCAGCGTGTGCGCCGTGTCCAACAATGAGAACTCGCCGCCGGGAAGTGCGAACGCGGCGACGGTTTCCGGCGACGGCAGGAGCTTCTTCCGGAGTGAGGCCGAGATCGCGGCCCACGTGCGCAACGTGCACGCGCCACCCTCCATCGTTTCGTCCCTGATGAACAGCAGTCCCGTCGGGGCTGCCACGAGAAGTCCGGCTTCAACGCCCGGCGTCGTCGGGGCGCGCTGCGTCTTCTGCGGCATCTGCTGCGGCTCGGAGCTCGAGCTTCAGCTTCACCTGGCCAGCCACTCGGCCAGTCTCTATAGGTGTCCCATTTGCAGGGAGGGTTTCGCGGTGGAGTTCCTGCTGGATCGACACGTAGCTCAGGTCCACCATCAGGCGGTGCAGGATCATCAGGCGCCGTTGGTTAGGAACAGGGAAAACGGACGCGTTCAACGGCCTAATAGAAATCAGGAGGAAGCGAAATCGTTGAAGAGAGGTCGTTCGCCAGCGTCGAGCAACAACAACTCCGTGAGTCAGCGCGACAACAACAACAAACGTTCGAATTACGGCAACTCCGGTCAGCAATGCGAGCTCTGCGAGCGCGGCGAATTCGCGAATGAAGCCGAGTTGCAGGCGCACAAGAAGCTCGCTCACACGCCACCCAAGCTATCCAACAAGAGTCTGTCCACCTTGAGCATGACATGCGGCTATTGCGGCGAGATATGTCGCTCGAGAAGCGAGCTGGAATCCCACACGAGACTGCAGCACGCGTCCAACGAGCCGGGCGGACGTCACAAGTGCAACATCTGCGACGAGGTGTGCCCGTCCGGCGCGAGTCTGGCCGAGCACAAGCTGCAGAAACACTGCAAGATCCAGCTGAGCGACACGTGCGTGGTGTGTCGCGGTTGCCTCACGTCGGAGAGCCAGTTCCTGGACCACGTGCAGAGACACAGTCTGGAGAACGTGGACCCGCAGCAACGACTGGACAGCACGCTGCCCCATCTGCCCGCGCCATGCGTCGTCTGCCGTCAGACGCTGATCAGCGACCTGGAGTGTCGTCTGCACGCGCGACATCACCTACGAACGTCCTCGGGTTCTCGCAGCGCCGGCGCCAGCCCGGCCAGTCCCGGCGGCAAAGGCCAGAGTCAGGGTTGCTGCCTCTGCCTGCGCGACTTCGCGGCCGAGGACTTTGTCAATCTGCCGCCCAATCCCGCCAGCACGAGCGGACAGTTACTCAGGGTCTGCAAGCCGTGCTACATGCGACACTCCCAGGGTCTGCCTATTCTGAACTCGACGACCTACGAGCATCGGGCGAAATATGAGGCGACCTGGCTCGCGAACAAAGACGGCCAGTGGGACGGAGCTAAGGACAAGTGGGAGCACGAGAGAGGGTCGCTCAAGGTAGAGGATCGGCCGAGGAACGAGGGAAACGCGGATAAGAAGCGCTGCGAGGAGTGCGGGGTGAAGTTCGAGGATTTCGAAGAGGCGGAGAAGCACCGGCTCGCCGAGCACGAGAAGCCTGGCGGTGGTGGCTCGAATACCTACACCTGTATACAGTGTCAAGTGTCATTCCCAAGCGAGGCGAAAATTCAGCAGCACGTGAGGAAGGAACATTTGGATGCATCCGGAAAAGCGTCCTTGGAGGCTTTACGGTGCCACTTGTGCTTATTTGAGGCTGCGAGTCCTATGCAGCTGCAAATTCACTTAATAGAGCACACTTTCGCCGGTTGTGCCGCTCTTAGCTGTTACATCTGCCAGTCGCTCTTCACAACTCCCATTGGCCTTCAGAATCACATGCTGCAGGAACACGGTCTGGACGCGCGACCGTATGATTGTTCCAAGTGCACGCTAAAGTTCTTCTTCAGCGCGGAACTGGACCACCACGTGCTGACCTTCCACCGTTCAGGAGAAGAGACGCAGTCTTCATCGGGCGAGAATATTCGCGAGGCGAAAAATCACGAGTCCGAGAAGCGCGACGGCGGCGGCGTAACGGTGAAAGAGGAGGTGATACAAAGCGGCAAGGAAGAGGAGGAGGAAGAAGAGGAAGTGAACGTAGATCAGGTAGGACAAGCGGAACACGGGGAGGCTGGACGAGAGGAGCAGAAGCTGAAGACGGAAGTGGACGACGAGGTGACGTCCGGCAGAATGGAATCGTGA
Protein Sequence: MLFKGNSSRLELLIGKIHAHKEPQQDEQGKSKEALGTGSSSWHSEDGGPNSRRGGETPSSCATPTSASFPSEPEVDADVGVNPDGNNPAAPYPCQFCDRTFPRLSYLKKHEQSHGDQMPYRCSWCNRLFKHKRSRDRHVKLHTGDRRYRCSKCEAAFSRSDHLKIHLKTHDTQRPYQCTACTRGYSSAAALTSHMQSHKKHHQSSSSQSAGKLQDVDYGRRSVSSHSTSSPPVPSSPSPSLNLSLNPRNVLKTSQVTGSASTTPILNSPLKLTCMYCTRDSFSCIQQLQMHVRTMHQAILSGADSGLARPPSPNRTSNEQQAVFCSRDKPPDCQDGPKEPRSDRKYPPEERADRPAGERDHYENAFTCDLCTMKFSTLACLRDHSLSIHRVDSGFGATMVICPLCGIPCTSAATYAEHYVLQHCENRRPAPTAGMDYGETKLNGVYDGAAMRDTRMPKNRDVPEAADLTNKRPTRPSADATTTAAASYTADTFLCGQCNAALKDFESFREHVARHLQADHRNQEISARQHLCPKCEAVFPTREDMLAHLTKHYLGQVSKEYACGACKKLYPHPDQLQRHLLDAHAHHLYRCALCRDTFDSKVAIQVHFAVKHSQECRIYRCSVCAVSNNENSPPGSANAATVSGDGRSFFRSEAEIAAHVRNVHAPPSIVSSLMNSSPVGAATRSPASTPGVVGARCVFCGICCGSELELQLHLASHSASLYRCPICREGFAVEFLLDRHVAQVHHQAVQDHQAPLVRNRENGRVQRPNRNQEEAKSLKRGRSPASSNNNSVSQRDNNNKRSNYGNSGQQCELCERGEFANEAELQAHKKLAHTPPKLSNKSLSTLSMTCGYCGEICRSRSELESHTRLQHASNEPGGRHKCNICDEVCPSGASLAEHKLQKHCKIQLSDTCVVCRGCLTSESQFLDHVQRHSLENVDPQQRLDSTLPHLPAPCVVCRQTLISDLECRLHARHHLRTSSGSRSAGASPASPGGKGQSQGCCLCLRDFAAEDFVNLPPNPASTSGQLLRVCKPCYMRHSQGLPILNSTTYEHRAKYEATWLANKDGQWDGAKDKWEHERGSLKVEDRPRNEGNADKKRCEECGVKFEDFEEAEKHRLAEHEKPGGGGSNTYTCIQCQVSFPSEAKIQQHVRKEHLDASGKASLEALRCHLCLFEAASPMQLQIHLIEHTFAGCAALSCYICQSLFTTPIGLQNHMLQEHGLDARPYDCSKCTLKFFFSAELDHHVLTFHRSGEETQSSSGENIREAKNHESEKRDGGGVTVKEEVIQSGKEEEEEEEEVNVDQVGQAEHGEAGREEQKLKTEVDDEVTSGRMES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01406753;
90% Identity: iTF_00126199;
80% Identity: -