Basic Information

Insect: Temnothorax nylanderi
Gene Symbol: L
Assembly: GCA_030848795.1
Location: JASTWM010000565.1:1281589-1288146[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.4 3.7e+02 3.2 0.6 12 23 90 101 86 101 0.88

2 19 2.2e-05 0.0034 19.0 0.4 1 23 107 129 107 129 0.99

3 19 0.0087 1.4 10.8 2.1 1 23 296 319 296 319 0.94

4 19 0.54 84 5.2 0.0 3 23 332 353 330 353 0.88

5 19 1.5 2.4e+02 3.8 0.1 3 23 421 441 420 441 0.97

6 19 0.0018 0.27 13.0 0.5 3 23 458 478 456 478 0.95

7 19 0.0019 0.3 12.9 0.6 1 23 487 510 487 510 0.92

8 19 2.9 4.5e+02 2.9 0.2 1 23 515 538 515 538 0.92

9 19 0.097 15 7.5 2.7 2 23 619 640 618 640 0.96

10 19 0.02 3.1 9.7 0.1 1 23 645 668 645 669 0.93

11 19 4.2 6.5e+02 2.4 0.1 2 23 733 756 732 756 0.81

12 19 4.3e-05 0.0067 18.1 1.0 2 23 771 793 770 793 0.96

13 19 0.036 5.6 8.9 0.9 1 23 802 825 802 825 0.93

14 19 1.2 1.8e+02 4.1 1.0 2 23 833 854 832 854 0.96

15 19 0.014 2.2 10.2 0.0 2 23 1019 1041 1018 1041 0.92

16 19 0.093 14 7.6 0.3 1 23 1052 1075 1052 1075 0.96

17 19 1.8 2.7e+02 3.6 0.1 2 23 1088 1109 1087 1109 0.94

18 19 0.028 4.4 9.2 0.1 2 23 1118 1140 1117 1140 0.94

19 19 0.093 15 7.6 2.6 1 23 1147 1170 1147 1170 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.4	3.7e+02	3.2	0.6	12	23	90	101	86	101	0.88
2	19	2.2e-05	0.0034	19.0	0.4	1	23	107	129	107	129	0.99
3	19	0.0087	1.4	10.8	2.1	1	23	296	319	296	319	0.94
4	19	0.54	84	5.2	0.0	3	23	332	353	330	353	0.88
5	19	1.5	2.4e+02	3.8	0.1	3	23	421	441	420	441	0.97
6	19	0.0018	0.27	13.0	0.5	3	23	458	478	456	478	0.95
7	19	0.0019	0.3	12.9	0.6	1	23	487	510	487	510	0.92
8	19	2.9	4.5e+02	2.9	0.2	1	23	515	538	515	538	0.92
9	19	0.097	15	7.5	2.7	2	23	619	640	618	640	0.96
10	19	0.02	3.1	9.7	0.1	1	23	645	668	645	669	0.93
11	19	4.2	6.5e+02	2.4	0.1	2	23	733	756	732	756	0.81
12	19	4.3e-05	0.0067	18.1	1.0	2	23	771	793	770	793	0.96
13	19	0.036	5.6	8.9	0.9	1	23	802	825	802	825	0.93
14	19	1.2	1.8e+02	4.1	1.0	2	23	833	854	832	854	0.96
15	19	0.014	2.2	10.2	0.0	2	23	1019	1041	1018	1041	0.92
16	19	0.093	14	7.6	0.3	1	23	1052	1075	1052	1075	0.96
17	19	1.8	2.7e+02	3.6	0.1	2	23	1088	1109	1087	1109	0.94
18	19	0.028	4.4	9.2	0.1	2	23	1118	1140	1117	1140	0.94
19	19	0.093	15	7.6	2.6	1	23	1147	1170	1147	1170	0.97

Sequence Information

Coding Sequence: ATGAATAATTCAGGCGCAAAGTGCAGGAGTAAATTCGCCGTCTGTCTTCGTTTCGGCGTGCCGAGACAGCTTCGCTTGACCGTCGCGCCTCGCCTCCTCACTCGGACCTCGTGGACCGATCTCGCCTTAAACGCCCGCGGATTCAGTTTTCCGCCGCGCCGACCTGGACCGACGTGTACACCGGGCGACCGGGCCGATGAATTATTCATCGGCCAGGTCCACCGCGAAAATCGCCGGAGTCGTTACCCGGGTTCGACCTGTCCGAAATCTCTCGATCACCTGAAGATTCACTTGAAGACGCACGACACCCAGAGGCCTTATCAATGCACGACTTGCACGAGAGGCTACAGCTCAGCCGCGGCCTTAACGTCGCACATGCAATCCCACAAGAAGCATCCCCAATCATCGTCCTCTCAGTCGACCGGCAAGCTCCAGGACATTGACTACGGTAGAAGAAGCGTCTCCTCCCACAGTACGTCGTCACCGCCGgtgccgtcgtcgccgtcgccgtcgttgaACCTCACTCTGAACCCGAGGAACGCCCTGAAAACGTCGCAGGGTACCGGCAGCACGTCCACCACGCCGATTCTCAACTCGCCCTTGAAGCTCGCCTGCATGTACTGCACCCGGGACTCGTTCAGCTGCATGCAGCAGCTACAGATGCACGTGCGCACGATGCACCAGGCGATCCTCAGCGGCGCGGAGGGTCTGGCGCGGCCGCCGTCGCCGAGCAGAACATCGAACGAGCAGCAAGCGGTGTTTTGCTCGCGCGATAAGCCACCCGATCGCCAGGACAGCTCGAAGGACTCGCGTTCAGATCGGAAATACCCGCCTGAGGAGAGAGTCGACAGGCCTGCCGGCGAACGAGACCACTACGAGAACGCCTTCACCTGCGACCAATGCACCATGAAATTCTCCACTCTGGCCTGCCTGCGCGAGCATTCGCTGTCGATACATCGAGTGGACAGTGGTTTCAGCGCGACGATGGTGATATGCCCGTTGTGCGGCATTCCGTGCACCTCGACGGCAGCCTACGCCGAGCATTACGTTCTTCAGCACTGCGAGAATCGTCGACTGGCGCCGACAACCAGCATAGATTACAGCGAGACGAAACTGAACGGCGTTTACGACAGTACTCCATCGAGAGACTCCAGGGTACCGAGAAGCAGGGACGCCTCGGAGGCCGCCGATCTCACGAATAAACGTCCGACCAGGCCATCCGCGGACGCCGCTGGCGGCTACACCGCCGATACCCTGTTGTGCGGCCAGTGTAACGCCGCGCTGAAGGATTTCGAGTCCTTTCGCGAACACGTGGCCCGGCACCTGCAGGCCGACCACCACAATCAGGAGATATCCAGCAGGCAGCATCTGTGTCCCAAGTGCGAGACTGTTTTCCCGACCCGCGAGGACATGCTGGCCCACCTGACCAAGCACTATCTGGGCCAGGTCAGCAAGGAATTCGCGTGCGGCGCCTGCAAAAAGTTCTACCCGCATCCGGACCAGCTTCAGAGACACTTGTTGGACTCCCACGCCCATCATCTCTACCGTTGCGCTCTGTGCCGAGACACGTTCGACTCCAAGGTGGCGATACAAGTGCATTTCGCGGTCAAGCACAGCCAGGAGTGCCGGATCTACCGATGTAGCGTGTGCACTCTGTCCAACAACGAGAATTCGCCACCGGGAGGGAACGCGGGTTCCGGTGACGGTAGGAGCTTTTTCAGGAGCGAGGCCGAGATGGCGGCCCACGTGCGCAACGTACACGCCCCTCCTCCCGTCGTCCagtctttaataaataacagtCCTGTCGGAGCTGCAACAAGAAGTCCGGCCTCGACGCCCGGCATCGTCGGAACGCGCTGCGTCTTCTGTGGGACATGCTGCAGTTCGGAGCTCGAGCTTCAGCTTCACCTGGCCAGCCACTCGGCCAGTCTCTACAGGTGTCCCATCTGCAGAGAAGGCTTTGCGGTGGAATTTCTGTTGGATCGACACGTCGCCCAGGTTCACCATCAAGCAGTGCAGAATCATCAGGCGCCGTCAATCAGAAACAGGGAAAACGGACGTGTTCATCGACCTGCCAGAAATCAGGAAGACGCGAAATCTCTGAAGAGGGGTCGTTCGCCAGCGTCAAGCAACAACAATTCTGTGAACCAGCGCGACAACAACAACAAACGTCCGAATTACGGTACTTCCGGTCAGCAATGCGAGCTCTGCGAGCGCGGTGAATTCGCGAACGAGGCCGAGCTGCAGGCACACAAGAAACTCGCCCACACACCCCCGAAGCTGTCCAAGTCTCTATCTACCTTGAGCATGACATGTGGCTATTGCGGCGAGGTCTGTCGCTCGCGAAGCGAGCTGGAATCTCACACGAGGATTCAGCACGCGTCCAACGAACCGGGTGGTCGTCACAAGTGCAATATCTGCGACGAGGTGTGCCCGTCCGGCGCGAGTCTGGCCGAGCACAAGCTCCAGAAGCACTGCAAGATCCAGCTGAGCGACACGTGCGTGGTGTGTCGCGGTTGTCTCACGTCGGAGAGCCAATTCCTAGACCACGTGCAAAGGCACAGTCTGGGGAACGTGGATCCGCAACAACGACTGGATAGTACGCTGCCTCATCTGCCCGCGCCATGCGTCGTCTGCCGACAGACGCTGATCAGCGATCTGGAATGTCGTCTGCACGCGCGGTATCATCTACGAACGTCCTCGGGATCGCGCAGCGCCGGCTCCAGCCCGACCAGTCCTGGTGGCGGCAAAAGCCAGAATCAAGGCTGCTGCCTATGCTTGCGCGATTTCGCAGCCGAGGACTTCGTCAATCTACCACCCAATCCTGCCAGTACAAGCGGACAGCTACTCAGAGTCTGCAAACCGTGCTACATGCGACACTCTCAGGGACTGCCTATTCTGAACTCGACAACCTACGAGCATCAGGCCAAATACGAGGCGGCCTGGCTCGCGAGCAAGGACGGCCAGTGGGACGAGGCCAAGGATAAGTGGGAACACGAAAGAGGAGTCAAGGTGGAGGATCGATCCAGGAACGAGGGAAACGCGAATAAAAAACGGTGCGAAGAGTGCGGGGTGAAGTTCGAAGATCCCGAAGAGGCTGAGAAGCACAGGATCGCCGAGCATGAAAAGACCGCCAGCGGTAACTTGAATACCTACACCTGCATACAGTGTCAAaTGTCGTTTCCAACTGAAGCGAAAATTCAGCAACACGTAAGGAAGGAACACTTGGAGGCATCGGGGAAAGGATCCTTGGAGGCTTTACGGTGCCACTTGTGCTTATTTGAGGCCGCCAGTCCTATGCAGCTGCAAATTCACTTAATAGAGCACACTTTTGCCGGTTGTGCCGCCCTTAGCTGTTACATCTGCCAGTCGCTCTTCACAACTCCCATTGGCCTTCAGAATCACATGCTACAAGAACACGGACTGGACGCGCGACCGTACGATTGCTCCAAGTGCACGCTCAAGTTCTTCTTCAGTGCGGAATTGGATCATCACGTACTGACCTTCCACCGTCCAGGGGAAGAGATCCACTCTTCGTCGACCGAGAACGCTCGCGAAAAGAATCGCGAGCCTGAGAAGCGCGATAGTGGTGTAACGGTGAAGGAGGAAGTGGTGCAAGGCGGtaaggaagaagaggaagaggaggaggaagtaAATGTGGATGATCAAGTGGGACAGGGACAACACGAAGAAGTTGGACGAGAGGAGCAGAAGCTGAAGACGGAAGTAAACGGCGAGACATCCGGCAGAGTGGAATCGTGA
Protein Sequence: MNNSGAKCRSKFAVCLRFGVPRQLRLTVAPRLLTRTSWTDLALNARGFSFPPRRPGPTCTPGDRADELFIGQVHRENRRSRYPGSTCPKSLDHLKIHLKTHDTQRPYQCTTCTRGYSSAAALTSHMQSHKKHPQSSSSQSTGKLQDIDYGRRSVSSHSTSSPPVPSSPSPSLNLTLNPRNALKTSQGTGSTSTTPILNSPLKLACMYCTRDSFSCMQQLQMHVRTMHQAILSGAEGLARPPSPSRTSNEQQAVFCSRDKPPDRQDSSKDSRSDRKYPPEERVDRPAGERDHYENAFTCDQCTMKFSTLACLREHSLSIHRVDSGFSATMVICPLCGIPCTSTAAYAEHYVLQHCENRRLAPTTSIDYSETKLNGVYDSTPSRDSRVPRSRDASEAADLTNKRPTRPSADAAGGYTADTLLCGQCNAALKDFESFREHVARHLQADHHNQEISSRQHLCPKCETVFPTREDMLAHLTKHYLGQVSKEFACGACKKFYPHPDQLQRHLLDSHAHHLYRCALCRDTFDSKVAIQVHFAVKHSQECRIYRCSVCTLSNNENSPPGGNAGSGDGRSFFRSEAEMAAHVRNVHAPPPVVQSLINNSPVGAATRSPASTPGIVGTRCVFCGTCCSSELELQLHLASHSASLYRCPICREGFAVEFLLDRHVAQVHHQAVQNHQAPSIRNRENGRVHRPARNQEDAKSLKRGRSPASSNNNSVNQRDNNNKRPNYGTSGQQCELCERGEFANEAELQAHKKLAHTPPKLSKSLSTLSMTCGYCGEVCRSRSELESHTRIQHASNEPGGRHKCNICDEVCPSGASLAEHKLQKHCKIQLSDTCVVCRGCLTSESQFLDHVQRHSLGNVDPQQRLDSTLPHLPAPCVVCRQTLISDLECRLHARYHLRTSSGSRSAGSSPTSPGGGKSQNQGCCLCLRDFAAEDFVNLPPNPASTSGQLLRVCKPCYMRHSQGLPILNSTTYEHQAKYEAAWLASKDGQWDEAKDKWEHERGVKVEDRSRNEGNANKKRCEECGVKFEDPEEAEKHRIAEHEKTASGNLNTYTCIQCQMSFPTEAKIQQHVRKEHLEASGKGSLEALRCHLCLFEAASPMQLQIHLIEHTFAGCAALSCYICQSLFTTPIGLQNHMLQEHGLDARPYDCSKCTLKFFFSAELDHHVLTFHRPGEEIHSSSTENAREKNREPEKRDSGVTVKEEVVQGGKEEEEEEEEVNVDDQVGQGQHEEVGREEQKLKTEVNGETSGRVES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01406753;
90% Identity: iTF_00126199;
80% Identity: -