Aips003518.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- -
- Assembly
- GCA_028554685.1
- Location
- CM052957.1:709882-717152[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-12 2.5e-09 37.6 0.0 4 39 148 184 145 188 0.89 2 4 1.3e-11 1.6e-08 35.0 0.2 2 39 200 237 199 241 0.93 3 4 1.5e-14 1.9e-11 44.5 0.0 2 45 255 299 254 299 0.96 4 4 1e-17 1.3e-14 54.6 0.1 1 43 306 349 306 351 0.95
Sequence Information
- Coding Sequence
- ATGCCTGGGCACGGCCTGTCGCAAGTGAAATGCGAACCGCTCTCGGATGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGTTGGCGCCGGCGGGCCCGGCAGCCACGCCGGTGTGTGTCAAGCAGGAGCGAGCTGACTCCCCTCCAGCTTCAACCCTGGAGACACTAGAGTCAGCACCACATAATGCTAAGAGCGTGTCCTTGTTGGATCGTCATATGGAATTTATGAACGTCACCGAAGTGCCTGATTCCACTGACTTCATGCCGCTATTGGCTGTCAAGGATGAACCATCGTCCGAAGGCGAACAAGCACACCTCAGTGGTGAAGACACGAGTGATTCCTGCGGCCGGCAAGCTTCGCCTGCTCCACGACACAGCCCCAAGAGCTGGACCCAGCAAGATATGGAGCGAGCTTTGGATGCTCTCAGAAACCACCAAATGAGCCTTACGAAGGCGTCAGCAACGTACGGCATTCCGTCCACGACGTTGTGGCAACGCGCTCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCCTGGAGCGAGACCGACCTGCGGGGAGCGCTGCACGCGCTGCGGGCCGGGGCCATCTCCGCTAACAAGGCCAGCAAGGCTTATGGTATTCCTAGCAGCACATTGTACAAGATAGCCCGCCGGGAGGGCATTCGACTGTCGGCGCCATTTAACGCGGCGCCTACTGCTTGGCGCCGCGCAGACCTGCAGCTGGCGCTCGCCTCCATCCGCTGTGGCGCCAGCTCCGTGCAGCGCGCCGCCACACAGTATGGGATACCCACAGGAACGCTGTATGGTCGTTGTAAGAGGGAAGGCATCGAGCTGTCCCGCTCGAACCCCACGCCGTGGTCCGAAGACGCCATGGGAGAAGCACTGGAAGCTGTCAGGATTGGGCAGATGTCCATAAACCAGGCAGCGATCCACTACAACCTTCCGTACTCCTCTCTATACGGACGGTTCAAGAGGTGCAAGTATCAGATGCAGAGTGTCCCACAGAACCAGCAGCAGTCACAGCACGATCCTCACAAAATGGAGCAAGAACAGCAACCTCACGAGGTGCAACAGTACTACCACCAGCTTCCACCGCACCAAGAAACGGACCCACACACATACGCCCACATGCACGAGTACACCCACACCCACGACCAGTATGGACAGGGGCAGTACTACCAGGGTTTTAACAGTATTCTGACTAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERADSPPASTLETLESAPHNAKSVSLLDRHMEFMNVTEVPDSTDFMPLLAVKDEPSSEGEQAHLSGEDTSDSCGRQASPAPRHSPKSWTQQDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSETDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSVPQNQQQSQHDPHKMEQEQQPHEVQQYYHQLPPHQETDPHTYAHMHEYTHTHDQYGQGQYYQGFNSILTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00302018; iTF_00301090; iTF_01093953; iTF_00924514; iTF_00071305; iTF_01092990; iTF_00785923; iTF_01439812; iTF_01338501; iTF_01031053; iTF_00177031; iTF_00363943; iTF_00445031; iTF_01027218; iTF_00273530; iTF_00889099; iTF_01363019; iTF_00441414; iTF_01360540; iTF_00017260; iTF_00043405; iTF_00018095; iTF_00973680; iTF_00783347; iTF_00450038; iTF_01117110; iTF_01119235; iTF_01118188; iTF_00111543; iTF_01151992; iTF_01260027; iTF_00274364; iTF_00300092; iTF_00049821; iTF_00327006; iTF_01221415; iTF_00186059; iTF_00185231; iTF_01487638; iTF_00037695; iTF_00124161; iTF_00121318; iTF_00685346; iTF_00711746; iTF_00928580; iTF_00809026; iTF_00851687; iTF_00809980; iTF_01192541; iTF_01361507; iTF_01532943; iTF_01062724; iTF_00622722; iTF_00785125; iTF_01063685; iTF_01084169; iTF_01064555; iTF_01061804; iTF_00831089; iTF_00171677; iTF_01538654; iTF_01085056; iTF_00072103; iTF_00122279; iTF_00758055; iTF_00123272; iTF_00448937; iTF_00726212; iTF_01440907; iTF_00906032; iTF_00907797; iTF_00375095; iTF_00906969; iTF_01526937; iTF_00038618; iTF_00036541; iTF_01525853; iTF_00745545; iTF_01377388; iTF_01230446; iTF_00147215; iTF_00383542; iTF_00951711;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -