Slub021195.1
Basic Information
- Insect
- Spilosoma lubricipeda
- Gene Symbol
- -
- Assembly
- GCA_905220595.1
- Location
- HG992290.1:19131508-19145831[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.3e-12 7.7e-09 36.1 0.0 4 39 147 183 144 187 0.89 2 4 2.9e-11 4.2e-08 33.7 0.3 2 39 199 236 198 240 0.92 3 4 3.6e-15 5.2e-12 46.2 0.3 2 45 254 298 253 298 0.96 4 4 7.4e-17 1.1e-13 51.7 0.0 1 42 305 347 305 349 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGGCTGTGGCTGGTGAAATGTGAGCCACCGTCAGACGAAGAAGATAGTGATTCACAGTTCGCGCCCAATTATCTATCTAGTCAGGGCAGTGGTCTGGAAGAGTTGGCACCGCTGGCGCCAGCGGGACCTGCAGCCACACCGGTATGTGTCAAACAAGAACGAGCTTCACCACCGGCCACGATGCTGGAAACTCTCGAATCGGCACCGCATTATGCCAAGAGCACCTCGTTGTTGGATCACCACAGGATTACAATGAACGTCGGTGAAGTGCCGGACTCCAGAGACTTTGTGCCGCTCTTACCTGTTAAAGATGAACCCTCATCCGAAGGAGAACAACCTCAGCTCAGTGGCGAAGACACCAGCGACTCTTGCAGCAGACAAATGTCACCAGCCCCTCGAACTAGCCCCAAGAATTGGACGCAACAAGATATGGAACGAGCGCTGGATGCACTTCGGAAACACCAGATGAGTCTTACTAAGGCATCAGCAACTTATGGTATTCCTTCGACAACCCTGTGGCAACGAGCTCATCGTCTTGGCATTGACACGCCGAAAAAAGAAGGAGCTGCAAAGTCCTGGAGTGAAGCCGATTTACGCGGAGCTCTTCACGCGTTAAGGGCAGGTGCCATATCTGCCAACAAAGCCAGCAAGGCCTATGGTATCCCGAGCAGTACTCTATATAAGATCGCTCGCCGCGAGGGGATCCGTCTGTCAGCACCGTTCAACGCAGCGCCGACGGCGTGGCGCCGCGCCGACCTACAGCGCGCCCTCGCCGCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCCACCTACGGCATCCCCACCGGAACGTTGTACGGTAGATGTAAACGCGAGGGTATAGAGTTATCTCGGTCCAACCCCACGCCGTGGTCGGAGGATGCCATGGGAGAAGCTCTAGACGCAGTTAGGATAGGGCAGATGTCAATAAACCAGGCGGCGATACATTTCAACTTGCCGTATTCATCGCTGTACGGCAGATTCAAGAGATGCAAGTACCAGATGCAGGGTGTCCTTCAACACCAACAGCAACAACAAGATATTCAAAAAATAGAGATGGACATTCCACAACACGAAGCTCACCAATACTACCACCAACTCGCTCCCCCACTCGACCAAGACCCACAAACATTTGCCAATGTGACTGAATATCCACACAACACCTACATACACGATCAATACGGCCAATATTACCAATCTTTTACAGGTATAGCGACTAGCTGA
- Protein Sequence
- MPGHGLWLVKCEPPSDEEDSDSQFAPNYLSSQGSGLEELAPLAPAGPAATPVCVKQERASPPATMLETLESAPHYAKSTSLLDHHRITMNVGEVPDSRDFVPLLPVKDEPSSEGEQPQLSGEDTSDSCSRQMSPAPRTSPKNWTQQDMERALDALRKHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQRALAAIRAGASSVQRAAATYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALDAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQGVLQHQQQQQDIQKIEMDIPQHEAHQYYHQLAPPLDQDPQTFANVTEYPHNTYIHDQYGQYYQSFTGIATS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_00441414;
- 80% Identity
- -