Tcit031080.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992797.1:24558479-24573547[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7e-12 4.1e-09 37.4 0.0 4 39 148 184 145 188 0.90 2 4 1e-10 6e-08 33.7 0.3 2 39 200 237 199 241 0.92 3 4 1.8e-13 1.1e-10 42.5 0.2 2 45 255 299 254 299 0.96 4 4 6.4e-18 3.8e-15 56.8 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCGCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCAGCTGCCACGCCAGTGTGTGTCAAGCAGGAGCGAGCGGAGTCGCCACCAGCTACCACGCTAGAGACGCTCGAGTCAGCACCACATAATGCCAAGAGCACGTCCCTGTTGGTTCGTCACATGGAATTCATGAACGTCACCGAAGTGCCTGACTCCACCGACTTCATGCCGCTGCTGGCTGTCAAGGATGAACCCTCGTCCGAAGGTGAACAAACACATCTTAGCTGTGACGACACGAGCGACTCCTGCGGCCGGCAAGCTTCGCCTGCGCCGCGACACAGTCCCAAGAGTTGGACCCAGCACGACATGGAACGAGCTTTGGACGCTCTAAGAAACCACCAGATGAGCCTTACGAAAGCATCAGCAACATACGGCATTCCATCCACCACGCTCTGGCAGCGAGCTCACCGGCTGGGCATAGACACACCCAAGAAGGAAGGAGCTGCCAAGTCCTGGAGCGAGGCTGATCTGCGAGGGGCTCTGCATGCATTGAGGGCAGGCGCTATCTCCGCTAATAAGGCCAGTAAAGCTTATGGCATCCCCAGCAGCACGCTGTACAAGATAGCGCGGCGGGAGGGCATCCGCCTGTCGGCGCCCTTCAACGCGGCGCCCACCGCCTGGCGCCGCGCCGACCTGCGCGCCGCGCTGGGCGCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCGCAGTACGGCATACCTACAGGAACACTATATGGTCGGTGTAAGCGAGAGGGCATCGAGCTGTCTCGATCCAACCCCACGCCGTGGTCTGAAGACGCCATGGGCGAAGCACTCGAAGCTGTCAGGGTGGGCCAGATGTCCATCAACCAGGCAGCAATCCACTACAACCTGCCGTACTCCTCGCTCTACGGGAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTACCCCACAAAATCAGCAGCATCAACAGCAAGATCCCCATAAAATGGAGCAAGAGAATCAACCCGACGAGGTGCAACAGTACTACCATCAGGTACCATCCCACCAGGAACCGGACCCGCGCACATATGCCCACATGCATGAATACACTAACCAAGACCAGTACGCACAGTACTACCAGGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKSTSLLVRHMEFMNVTEVPDSTDFMPLLAVKDEPSSEGEQTHLSCDDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLRAALGAIRAGASSVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGTPQNQQHQQQDPHKMEQENQPDEVQQYYHQVPSHQEPDPRTYAHMHEYTNQDQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -