Smeg013214.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- -
- Assembly
- GCA_958496365.1
- Location
- OY292526.1:702478-713048[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.2e-12 2.3e-09 37.5 0.0 4 39 148 184 145 188 0.90 2 4 6.6e-11 4.8e-08 33.2 0.2 3 39 201 237 199 241 0.91 3 4 1.5e-14 1.1e-11 45.0 0.1 2 45 255 299 254 299 0.96 4 4 2.9e-18 2.1e-15 56.8 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGACTGTCTCAAGTGAAATGCGAACCGCTATCCGACGAAGATGACAGCGACTCACAATTCGCGCACAGTTATTTATCCAGTCAGGGTAGTGGCTTGGAGGAGCTAGCACCGCTGGCACCAGCAGGCCCCGCCGCCACGCCAGTGTGCGTCAAGCAGGAGCGGGCTGACTCCCCGCCGACAGCAACCCTCGAAACGCTAGAGTCAGCACCGCAACATGCTAAGagTACATCACTGCTGGGCCGCCATTTGGAATTCATGAACGTTAATGATGTTCCCGACTCCACTGACTTCATGCCACTGTTAGCTGTCAAAGATGAACCCTCGTCAGAAGGAGAGCAACCACAACTTAGTGGTGAAGATACGAGCGACTCATGTGGCCGACAAGCCTCGCCCGCGCCACGACACAGCCCCAAGAGTTGGACCCAACATGATATGGAGCGAGCACTCGATGCTCTGCGCAACCATCAGATGAGCCTCACTAAGGCATCAGCGACGTACGGCATACCGTCGACGACCCTGTGGCAGCGCGCGCACCGGCTCGGGATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCCTGGAGCGACGCCGACCTGCGCGGGGCGCTGCACGCGCTCAGGGCCGGCGCTATATCTGCTAATAAGGCCAGTAAGGCGTATGGAATACCGAGCAGCACTCTGTACAAGATAGCCCGGCGGGAAGGCATCCGACTGTCGGCGCCGTTCAACGCGGCTCCGACGGCGTGGAGGCGAGCTGACCTGCAGCTGGCGCTGGCCTCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCTCGCAGTACGGGATACCCACCGGAACTCTATATGGTAGATGCAAACGTGAAGGAATTGAGCTTTCTCGCTCCAACCCTACGCCCTGGTCGGAAGACGCCATGGGTGAAGCACTTGAAGCTGTCAGGGTCGGCCAGATGTCCATCAACCAAGCTGCGATCCACTACAACCTGCCGTACTCCTCGCTCTACGGGAGGTTCAAGAGGTGCAAATATCAGATGCAGGGTTCCTCCCAAAACCTGCAGCAGGTGCATCAAGAGCAGGCGACTCACGAGGTGCAGCAGTACTACGCGCAGGCGCCGGCGCAGCTCGAGCCGGAGCCGCTCACCTACACACATGCGCACGagtacacacacacgcacgacCAGTACGGACAATACTACCAGACTTTCAACGGTATCGCCACCAGCTGA
- Protein Sequence
- MPGYGLSQVKCEPLSDEDDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERADSPPTATLETLESAPQHAKSTSLLGRHLEFMNVNDVPDSTDFMPLLAVKDEPSSEGEQPQLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSDADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGSSQNLQQVHQEQATHEVQQYYAQAPAQLEPEPLTYTHAHEYTHTHDQYGQYYQTFNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- iTF_00017260; iTF_00018095;
- 80% Identity
- -