Clig015403.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990966.1:14351893-14361235[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-11 7.7e-09 35.8 0.0 4 39 148 184 145 188 0.90 2 4 1.1e-10 5e-08 33.2 0.2 3 39 201 237 199 241 0.91 3 4 8.3e-15 3.9e-12 46.4 0.1 2 45 255 299 254 299 0.96 4 4 4.7e-18 2.2e-15 56.8 0.0 1 42 306 348 306 350 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCTCAAGTGAAATGCGAACCGCTCTCCGACGAAGAAGACACCGACTCACAATTCGCACACAGTTACTTATCCAGTCAGGGTAGTGGCTTGGAGGAGTTGGCTCCCCTGGCGCCAGCGGGCCCGGCCGCCACGCCAGTATGCGTCAAGCAGGAGCGAGCTGACTCCCCACCGACTTCAAATCTTGAAATACTTGAGTCAGCACCACATAATGCTAAGTGTACGTCACTGCTGGATCGCCATTTGGAGTTCATGAACGTATGCGAGGTGCCAGACTCCACCGACTTCATGCCACTGCTGGCCGTCAAAGACGAACCCTCGTCTGAAGGAGAGCAACCGCAACTTAGTGGAGAAGACACGAGTGACTCGTGTGGCCGACAGGCCTCGCCCGCGCCCCGACACAGCCCGAAGAGTTGGAGTCAACACGATATGGAGCGAGCGCTGAATGCGCTGCGAACACACCAGATGAGCCTAACTAAGGCATCAGCGACGTACGGCATACCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGACGGCGCCGCCAAGTCCTGGAGCGACGCCGACCTGCGCGGCGCCCTGCACGCGCTGCGGGCCGGCGCTATATCTGCCAACAAGGCCAGCAAGGCCTATGGGATCCCGAGCAGCACTCTGTACAAGATAGCGCGGCGCGAGGGCATCCGCCTGTCGGCGCCGTTCAACGCGGCGCCGACGTCGTGGCGGCGCGCCGACCTGCAGCTGGCGCTGGCGGCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCTCGCAGTACGGGATACCCACCGGAACTCTGTACGGGAGATGTAAACGTGAAGGGATAGAGTTGTCGCGCTCTAATCCTACGCCTTGGTCTGAGGACGCCATGGGAGAAGCGCTGGAAGCTGTCAGGGTGGGTCAGATGTCCATCAACCAAGCCGCGATCCACTACAACCTGCCGTACTCCTCGCTCTACGGCAGATTCAAGAGGTGCAAATATCAGATGCAGGTTGTGTCCCAAAATGGGCAGCAGGTGCATCAAGATTCCCAAGAGCAGCGGCGACCGCACGAGGGCCAGCAGTACTACCCGCCGGCGCCACACCTCGAGCAGGACATACACACATACACACATGTGCAGGACTACACACACATGCACGACCAGTACGGACAGTACTACCAGGGTTTCAACAGTATTGCCACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDTDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERADSPPTSNLEILESAPHNAKCTSLLDRHLEFMNVCEVPDSTDFMPLLAVKDEPSSEGEQPQLSGEDTSDSCGRQASPAPRHSPKSWSQHDMERALNALRTHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGAAKSWSDADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALAAIRCGASSVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQVVSQNGQQVHQDSQEQRRPHEGQQYYPPAPHLEQDIHTYTHVQDYTHMHDQYGQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041698;
- 90% Identity
- -
- 80% Identity
- -